{"id":"https://openalex.org/W2050568143","doi":"https://doi.org/10.1186/1471-2105-7-s2-s6","title":"RiboaptDB: A Comprehensive Database of Ribozymes and Aptamers","display_name":"RiboaptDB: A Comprehensive Database of Ribozymes and Aptamers","publication_year":2006,"publication_date":"2006-09-01","ids":{"openalex":"https://openalex.org/W2050568143","doi":"https://doi.org/10.1186/1471-2105-7-s2-s6","mag":"2050568143","pmid":"https://pubmed.ncbi.nlm.nih.gov/17118149"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-7-s2-s6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-s2-s6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-S2-S6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-S2-S6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005195883","display_name":"Venkata J. Thodima","orcid":null},"institutions":[{"id":"https://openalex.org/I44854399","display_name":"University of Southern Mississippi","ror":"https://ror.org/0270vfa57","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I44854399"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Venkata Thodima","raw_affiliation_strings":["Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, Mississippi 39406, USA. youping.deng@usm.edu","Department of Biological Sciences, University of Southern, Mississippi, Hattiesburg, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, Mississippi 39406, USA. youping.deng@usm.edu","institution_ids":["https://openalex.org/I44854399"]},{"raw_affiliation_string":"Department of Biological Sciences, University of Southern, Mississippi, Hattiesburg, USA","institution_ids":["https://openalex.org/I44854399"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035578057","display_name":"Mehdi Pirooznia","orcid":"https://orcid.org/0000-0002-4210-6458"},"institutions":[{"id":"https://openalex.org/I44854399","display_name":"University of Southern Mississippi","ror":"https://ror.org/0270vfa57","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I44854399"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mehdi Pirooznia","raw_affiliation_strings":["Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, Mississippi, 39406, USA","Department of Biological Sciences, University of Southern, Mississippi, Hattiesburg, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, Mississippi, 39406, USA","institution_ids":["https://openalex.org/I44854399"]},{"raw_affiliation_string":"Department of Biological Sciences, University of Southern, Mississippi, Hattiesburg, USA","institution_ids":["https://openalex.org/I44854399"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042435594","display_name":"Youping Deng","orcid":"https://orcid.org/0000-0002-5951-8213"},"institutions":[{"id":"https://openalex.org/I44854399","display_name":"University of Southern Mississippi","ror":"https://ror.org/0270vfa57","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I44854399"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Youping Deng","raw_affiliation_strings":["Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, Mississippi, 39406, USA","Department of Biological Sciences, University of Southern, Mississippi, Hattiesburg, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, Mississippi, 39406, USA","institution_ids":["https://openalex.org/I44854399"]},{"raw_affiliation_string":"Department of Biological Sciences, University of Southern, Mississippi, Hattiesburg, USA","institution_ids":["https://openalex.org/I44854399"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5005195883"],"corresponding_institution_ids":["https://openalex.org/I44854399"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.0898,"has_fulltext":true,"cited_by_count":34,"citation_normalized_percentile":{"value":0.74993281,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"7","issue":"S2","first_page":"S6","last_page":"S6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/aptamer","display_name":"Aptamer","score":0.84816575050354},{"id":"https://openalex.org/keywords/ribozyme","display_name":"Ribozyme","score":0.7688189744949341},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.579809844493866},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5482379794120789},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.45894208550453186},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3866252601146698},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3483526110649109},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.25890398025512695},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21564450860023499},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09556970000267029},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.06101071834564209}],"concepts":[{"id":"https://openalex.org/C128972844","wikidata":"https://www.wikidata.org/wiki/Q418722","display_name":"Aptamer","level":2,"score":0.84816575050354},{"id":"https://openalex.org/C76346623","wikidata":"https://www.wikidata.org/wiki/Q205858","display_name":"Ribozyme","level":4,"score":0.7688189744949341},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.579809844493866},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5482379794120789},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.45894208550453186},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3866252601146698},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3483526110649109},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.25890398025512695},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21564450860023499},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09556970000267029},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.06101071834564209}],"mesh":[{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016337","descriptor_name":"RNA, Catalytic","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016337","descriptor_name":"RNA, Catalytic","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016337","descriptor_name":"RNA, Catalytic","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D052157","descriptor_name":"Aptamers, Nucleotide","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D052157","descriptor_name":"Aptamers, Nucleotide","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D052157","descriptor_name":"Aptamers, Nucleotide","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-7-s2-s6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-s2-s6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-S2-S6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17118149","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17118149","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:aquila.usm.edu:fac_pubs-9705","is_oa":true,"landing_page_url":"https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-7-S2-S6","pdf_url":null,"source":{"id":"https://openalex.org/S4306402529","display_name":"Aquila Digital Community (University of Southern Mississippi)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I44854399","host_organization_name":"University of Southern Mississippi","host_organization_lineage":["https://openalex.org/I44854399"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Publications","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:9ab383c23adf4319b4d2b94a00b29a8a","is_oa":true,"landing_page_url":"https://doaj.org/article/9ab383c23adf4319b4d2b94a00b29a8a","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 7, Iss Suppl 2, p S6 (2006)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1683567","is_oa":true,"landing_page_url":"http://doi.org/10.1186/1471-2105-7-S2-S6","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-7-s2-s6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-s2-s6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-S2-S6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5143913891","display_name":null,"funder_award_id":"RR0164","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7013006493","display_name":null,"funder_award_id":"RR016476","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G8279133435","display_name":null,"funder_award_id":"P20RR016476","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"}],"funders":[{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320309142","display_name":"University of Southern Mississippi","ror":"https://ror.org/0270vfa57"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2050568143.pdf","grobid_xml":"https://content.openalex.org/works/W2050568143.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W129247355","https://openalex.org/W139160806","https://openalex.org/W1607104589","https://openalex.org/W1949314906","https://openalex.org/W1970478438","https://openalex.org/W1972309130","https://openalex.org/W1975728152","https://openalex.org/W1980657471","https://openalex.org/W1985573953","https://openalex.org/W1986486963","https://openalex.org/W1988556506","https://openalex.org/W1998620882","https://openalex.org/W2002953155","https://openalex.org/W2003711915","https://openalex.org/W2009046687","https://openalex.org/W2014853948","https://openalex.org/W2015918516","https://openalex.org/W2015960673","https://openalex.org/W2026995402","https://openalex.org/W2052812744","https://openalex.org/W2053073103","https://openalex.org/W2055723458","https://openalex.org/W2056789539","https://openalex.org/W2058880489","https://openalex.org/W2069374274","https://openalex.org/W2071632391","https://openalex.org/W2077130806","https://openalex.org/W2094542874","https://openalex.org/W2095638491","https://openalex.org/W2099297582","https://openalex.org/W2103311193","https://openalex.org/W2106940919","https://openalex.org/W2118548020","https://openalex.org/W2124264886","https://openalex.org/W2129445143","https://openalex.org/W2134097743","https://openalex.org/W2168212562","https://openalex.org/W2417303326","https://openalex.org/W2417524540","https://openalex.org/W2462195140","https://openalex.org/W4233492346","https://openalex.org/W4240941162"],"related_works":["https://openalex.org/W2967136651","https://openalex.org/W2033684641","https://openalex.org/W2913646003","https://openalex.org/W2081632393","https://openalex.org/W2147509954","https://openalex.org/W1970773045","https://openalex.org/W1996962471","https://openalex.org/W4311648110","https://openalex.org/W1492738880","https://openalex.org/W2177471056"],"abstract_inverted_index":{"This":[0],"database,":[1],"besides":[2],"serving":[3],"as":[4,39],"a":[5,40],"storehouse":[6],"of":[7,48],"sequences":[8],"that":[9],"may":[10],"have":[11],"diagnostic":[12],"or":[13],"therapeutic":[14],"utility":[15],"in":[16,35,52],"medicine,":[17],"provides":[18],"valuable":[19],"information":[20,33],"for":[21,31,43],"computational":[22],"and":[23,42,60],"theoretical":[24],"biologists.":[25],"The":[26,55],"RiboaptDB":[27],"is":[28,57,61],"extremely":[29],"useful":[30],"garnering":[32],"about":[34],"vitro":[36],"selection":[37],"experiments":[38],"whole":[41],"better":[44],"understanding":[45],"the":[46],"distribution":[47],"functional":[49],"nucleic":[50],"acids":[51],"sequence":[53],"space.":[54],"database":[56],"updated":[58],"regularly":[59],"publicly":[62],"available":[63],"at":[64],"http://mfgn.usm.edu/ebl/riboapt/.":[65]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
