{"id":"https://openalex.org/W1807981783","doi":"https://doi.org/10.1186/1471-2105-7-56","title":"A methodology for the structural and functional analysis of signaling and regulatory networks","display_name":"A methodology for the structural and functional analysis of signaling and regulatory networks","publication_year":2006,"publication_date":"2006-02-07","ids":{"openalex":"https://openalex.org/W1807981783","doi":"https://doi.org/10.1186/1471-2105-7-56","mag":"1807981783","pmid":"https://pubmed.ncbi.nlm.nih.gov/16464248"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-7-56","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-56","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-56","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-56","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080707502","display_name":"Steffen Klamt","orcid":"https://orcid.org/0000-0003-2563-7561"},"institutions":[{"id":"https://openalex.org/I4210127568","display_name":"Max Planck Institute for Dynamics of Complex Technical Systems","ror":"https://ror.org/030h7k016","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210127568"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Steffen Klamt","raw_affiliation_strings":["Max-Planck Institute for Dynamics of Complex Technical Systems, Sandtorstrasse 1, D-39106 Magdeburg, Germany. klamt@mpi-magdeburg.mpg.de","Max Planck Institute for Dynamics of Complex Technical Systems; Magdeburg; Germany"],"affiliations":[{"raw_affiliation_string":"Max-Planck Institute for Dynamics of Complex Technical Systems, Sandtorstrasse 1, D-39106 Magdeburg, Germany. klamt@mpi-magdeburg.mpg.de","institution_ids":["https://openalex.org/I4210127568"]},{"raw_affiliation_string":"Max Planck Institute for Dynamics of Complex Technical Systems; Magdeburg; Germany","institution_ids":["https://openalex.org/I4210127568"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005499510","display_name":"Julio S\u00e1ez-Rodr\u00edguez","orcid":"https://orcid.org/0000-0002-8552-8976"},"institutions":[{"id":"https://openalex.org/I4210127568","display_name":"Max Planck Institute for Dynamics of Complex Technical Systems","ror":"https://ror.org/030h7k016","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210127568"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Julio Saez-Rodriguez","raw_affiliation_strings":["Max-Planck Institute for Dynamics of Complex Technical Systems, Sandtorstrasse 1, D-39106 Magdeburg, Germany and","Max Planck Institute for Dynamics of Complex Technical Systems; Magdeburg; Germany"],"affiliations":[{"raw_affiliation_string":"Max-Planck Institute for Dynamics of Complex Technical Systems, Sandtorstrasse 1, D-39106 Magdeburg, Germany and","institution_ids":["https://openalex.org/I4210127568"]},{"raw_affiliation_string":"Max Planck Institute for Dynamics of Complex Technical Systems; Magdeburg; Germany","institution_ids":["https://openalex.org/I4210127568"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047932077","display_name":"Jonathan A. Lindquist","orcid":"https://orcid.org/0000-0001-6846-5056"},"institutions":[{"id":"https://openalex.org/I4210138551","display_name":"University Hospital Magdeburg","ror":"https://ror.org/03m04df46","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210138551"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jonathan A Lindquist","raw_affiliation_strings":["Institute for Immunology, University of Magdeburg, Leipziger Strasse 44, D-39120 Magdeburg, Germany","Institute for Immunology, University of Magdeburg, Magdeburg, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Immunology, University of Magdeburg, Leipziger Strasse 44, D-39120 Magdeburg, Germany","institution_ids":["https://openalex.org/I4210138551"]},{"raw_affiliation_string":"Institute for Immunology, University of Magdeburg, Magdeburg, Germany","institution_ids":["https://openalex.org/I4210138551"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105208424","display_name":"Luca Simeoni","orcid":null},"institutions":[{"id":"https://openalex.org/I4210138551","display_name":"University Hospital Magdeburg","ror":"https://ror.org/03m04df46","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210138551"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Luca Simeoni","raw_affiliation_strings":["Institute for Immunology, University of Magdeburg, Leipziger Strasse 44, D-39120 Magdeburg, Germany","Institute for Immunology, University of Magdeburg, Magdeburg, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Immunology, University of Magdeburg, Leipziger Strasse 44, D-39120 Magdeburg, Germany","institution_ids":["https://openalex.org/I4210138551"]},{"raw_affiliation_string":"Institute for Immunology, University of Magdeburg, Magdeburg, Germany","institution_ids":["https://openalex.org/I4210138551"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5105425269","display_name":"Ernst D Gilles","orcid":null},"institutions":[{"id":"https://openalex.org/I4210127568","display_name":"Max Planck Institute for Dynamics of Complex Technical Systems","ror":"https://ror.org/030h7k016","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210127568"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ernst D Gilles","raw_affiliation_strings":["Max-Planck Institute for Dynamics of Complex Technical Systems, Sandtorstrasse 1, D-39106 Magdeburg, Germany and","Max Planck Institute for Dynamics of Complex Technical Systems; Magdeburg; Germany"],"affiliations":[{"raw_affiliation_string":"Max-Planck Institute for Dynamics of Complex Technical Systems, Sandtorstrasse 1, D-39106 Magdeburg, Germany and","institution_ids":["https://openalex.org/I4210127568"]},{"raw_affiliation_string":"Max Planck Institute for Dynamics of Complex Technical Systems; Magdeburg; Germany","institution_ids":["https://openalex.org/I4210127568"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5080707502"],"corresponding_institution_ids":["https://openalex.org/I4210127568"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1080,"currency":"EUR","value_usd":1164},"fwci":8.9898,"has_fulltext":true,"cited_by_count":408,"citation_normalized_percentile":{"value":0.98619112,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"7","issue":"1","first_page":"56","last_page":"56"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rotation-formalisms-in-three-dimensions","display_name":"Rotation formalisms in three dimensions","score":0.7717178463935852},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6111029982566833},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5661302804946899},{"id":"https://openalex.org/keywords/concatenation","display_name":"Concatenation (mathematics)","score":0.5309314727783203},{"id":"https://openalex.org/keywords/network-analysis","display_name":"Network analysis","score":0.5064300298690796},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4746333360671997},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.41783207654953003},{"id":"https://openalex.org/keywords/functional-dependency","display_name":"Functional dependency","score":0.41580110788345337},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39637526869773865},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2168407440185547},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18598124384880066},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.1408097743988037}],"concepts":[{"id":"https://openalex.org/C171018156","wikidata":"https://www.wikidata.org/wiki/Q7370306","display_name":"Rotation formalisms in three dimensions","level":2,"score":0.7717178463935852},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6111029982566833},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5661302804946899},{"id":"https://openalex.org/C87619178","wikidata":"https://www.wikidata.org/wiki/Q126002","display_name":"Concatenation (mathematics)","level":2,"score":0.5309314727783203},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.5064300298690796},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4746333360671997},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.41783207654953003},{"id":"https://openalex.org/C26320393","wikidata":"https://www.wikidata.org/wiki/Q597053","display_name":"Functional dependency","level":3,"score":0.41580110788345337},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39637526869773865},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2168407440185547},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18598124384880066},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.1408097743988037},{"id":"https://openalex.org/C5655090","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database","level":2,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D016015","descriptor_name":"Logistic Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016015","descriptor_name":"Logistic Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016015","descriptor_name":"Logistic Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D025461","descriptor_name":"Feedback, Physiological","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D025461","descriptor_name":"Feedback, Physiological","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D025461","descriptor_name":"Feedback, Physiological","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-7-56","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-56","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-56","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16464248","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16464248","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:b78486bc91e847769af58f9718b4328a","is_oa":true,"landing_page_url":"https://doaj.org/article/b78486bc91e847769af58f9718b4328a","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 7, Iss 1, p 56 (2006)","raw_type":"article"},{"id":"pmh:oai:edoc.mpg.de:251415","is_oa":false,"landing_page_url":"http://edoc.mpg.de/251415","pdf_url":null,"source":{"id":"https://openalex.org/S4406922265","display_name":"Max Planck Institute for Plasma Physics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, v.7 (2006)","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1458363","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1458363","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.mpg.de:item_1757320","is_oa":true,"landing_page_url":"http://hdl.handle.net/11858/00-001M-0000-0013-9AC7-7","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-7-56","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-56","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-56","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.6200000047683716}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1807981783.pdf","grobid_xml":"https://content.openalex.org/works/W1807981783.grobid-xml"},"referenced_works_count":72,"referenced_works":["https://openalex.org/W1243197228","https://openalex.org/W1484198052","https://openalex.org/W1570131048","https://openalex.org/W1576664335","https://openalex.org/W1621975707","https://openalex.org/W1669008417","https://openalex.org/W1671906456","https://openalex.org/W1758395617","https://openalex.org/W1932791005","https://openalex.org/W1964491374","https://openalex.org/W1964547361","https://openalex.org/W1965712069","https://openalex.org/W1970661255","https://openalex.org/W1971224531","https://openalex.org/W1974561108","https://openalex.org/W1979230873","https://openalex.org/W1979831177","https://openalex.org/W1979955019","https://openalex.org/W1981356148","https://openalex.org/W1983230237","https://openalex.org/W1996529795","https://openalex.org/W1996993801","https://openalex.org/W2000385576","https://openalex.org/W2004308928","https://openalex.org/W2012133308","https://openalex.org/W2017862866","https://openalex.org/W2017875287","https://openalex.org/W2021930726","https://openalex.org/W2022864842","https://openalex.org/W2026089579","https://openalex.org/W2028415754","https://openalex.org/W2033356443","https://openalex.org/W2033925647","https://openalex.org/W2038153693","https://openalex.org/W2047365291","https://openalex.org/W2053463045","https://openalex.org/W2058221907","https://openalex.org/W2062116003","https://openalex.org/W2065432632","https://openalex.org/W2065546165","https://openalex.org/W2066580949","https://openalex.org/W2067160012","https://openalex.org/W2073307618","https://openalex.org/W2075161553","https://openalex.org/W2080128271","https://openalex.org/W2088669413","https://openalex.org/W2092263253","https://openalex.org/W2092284137","https://openalex.org/W2094097101","https://openalex.org/W2094399313","https://openalex.org/W2094525983","https://openalex.org/W2094879449","https://openalex.org/W2098739408","https://openalex.org/W2106225544","https://openalex.org/W2110070747","https://openalex.org/W2110694123","https://openalex.org/W2111102591","https://openalex.org/W2114518254","https://openalex.org/W2116324021","https://openalex.org/W2125690626","https://openalex.org/W2130790725","https://openalex.org/W2141368462","https://openalex.org/W2150317682","https://openalex.org/W2161682775","https://openalex.org/W2163855763","https://openalex.org/W2168209933","https://openalex.org/W2281218127","https://openalex.org/W2578972765","https://openalex.org/W2608543704","https://openalex.org/W4211075026","https://openalex.org/W4237496336","https://openalex.org/W4240842438"],"related_works":["https://openalex.org/W2901655697","https://openalex.org/W1525985997","https://openalex.org/W118100147","https://openalex.org/W2727283706","https://openalex.org/W108107911","https://openalex.org/W2161626927","https://openalex.org/W2952963846","https://openalex.org/W2135602072","https://openalex.org/W2023465156","https://openalex.org/W2013286793"],"abstract_inverted_index":{"The":[0],"methods":[1],"and":[2],"formalisms":[3],"we":[4],"propose":[5],"herein":[6],"are":[7],"another":[8],"step":[9],"towards":[10],"the":[11],"comprehensive":[12],"functional":[13],"analysis":[14],"of":[15],"cellular":[16],"interaction":[17],"networks.":[18],"Their":[19],"potential,":[20],"shown":[21],"on":[22],"a":[23,30],"realistic":[24],"T-cell":[25],"signaling":[26],"model,":[27],"makes":[28],"them":[29],"promising":[31],"tool.":[32]},"counts_by_year":[{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":17},{"year":2020,"cited_by_count":18},{"year":2019,"cited_by_count":22},{"year":2018,"cited_by_count":14},{"year":2017,"cited_by_count":20},{"year":2016,"cited_by_count":17},{"year":2015,"cited_by_count":22},{"year":2014,"cited_by_count":31},{"year":2013,"cited_by_count":35},{"year":2012,"cited_by_count":36}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
