{"id":"https://openalex.org/W1520502684","doi":"https://doi.org/10.1186/1471-2105-7-532","title":"Model-driven user interfaces for bioinformatics data resources: regenerating the wheel as an alternative to reinventing it","display_name":"Model-driven user interfaces for bioinformatics data resources: regenerating the wheel as an alternative to reinventing it","publication_year":2006,"publication_date":"2006-12-01","ids":{"openalex":"https://openalex.org/W1520502684","doi":"https://doi.org/10.1186/1471-2105-7-532","mag":"1520502684","pmid":"https://pubmed.ncbi.nlm.nih.gov/17169146"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-7-532","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-532","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-532","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-532","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049879706","display_name":"Kevin Garwood","orcid":null},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kevin Garwood","raw_affiliation_strings":["School of Computer Science, University of Manchester, Oxford Road, Manchester M13 9PL, UK. garwood@cs.man.ac.uk <garwood@cs.man.ac.uk>","Sch. of Comput. Sci., Univ. of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Oxford Road, Manchester M13 9PL, UK. garwood@cs.man.ac.uk <garwood@cs.man.ac.uk>","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Sch. of Comput. Sci., Univ. of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059335015","display_name":"Christopher Garwood","orcid":null},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Christopher Garwood","raw_affiliation_strings":["School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK","Sch. of Comput. Sci., Univ. of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Sch. of Comput. Sci., Univ. of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016443832","display_name":"Cornelia Hedeler","orcid":null},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Cornelia Hedeler","raw_affiliation_strings":["School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK","Sch. of Comput. Sci., Univ. of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Sch. of Comput. Sci., Univ. of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113673422","display_name":"Tony Griffiths","orcid":null},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Tony Griffiths","raw_affiliation_strings":["School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK","Sch. of Comput. Sci., Univ. of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Sch. of Comput. Sci., Univ. of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062241736","display_name":"Neil Swainston","orcid":"https://orcid.org/0000-0001-7020-1236"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Neil Swainston","raw_affiliation_strings":["Manchester Centre for Integrated Systems Biology, Manchester Interdisciplinary Biocentre, University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK","Manchester Centre for Integrated Systems Biology, Manchester Interdisciplinary Biocentre, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Manchester Centre for Integrated Systems Biology, Manchester Interdisciplinary Biocentre, University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Manchester Centre for Integrated Systems Biology, Manchester Interdisciplinary Biocentre, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075883279","display_name":"Stephen G. Oliver","orcid":"https://orcid.org/0000-0003-3410-6439"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stephen G Oliver","raw_affiliation_strings":["Faculty of Life Sciences, University of Manchester, Michael Smith Building, Oxford Road, Manchester, M13 9PT, UK","Faculty of Life Sciences; University of Manchester Michael Smith Building; Manchester UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Life Sciences, University of Manchester, Michael Smith Building, Oxford Road, Manchester, M13 9PT, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Faculty of Life Sciences; University of Manchester Michael Smith Building; Manchester UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066619159","display_name":"Norman W. Paton","orcid":"https://orcid.org/0000-0003-2008-6617"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Norman W Paton","raw_affiliation_strings":["School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK","Sch. of Comput. Sci., Univ. of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Sch. of Comput. Sci., Univ. of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":4.1354,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.93239006,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"7","issue":"1","first_page":"532","last_page":"532"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.663100004196167,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.663100004196167,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.09459999948740005,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.054099999368190765,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7603883743286133},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.5863803625106812},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5677105188369751},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5210299491882324},{"id":"https://openalex.org/keywords/container","display_name":"Container (type theory)","score":0.5166304707527161},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.5071616172790527},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.47348296642303467},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4117882251739502},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3991090655326843},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.37984195351600647},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35251757502555847},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1486978828907013},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09612277150154114}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7603883743286133},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.5863803625106812},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5677105188369751},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5210299491882324},{"id":"https://openalex.org/C2781018962","wikidata":"https://www.wikidata.org/wiki/Q5164884","display_name":"Container (type theory)","level":2,"score":0.5166304707527161},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.5071616172790527},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.47348296642303467},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4117882251739502},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3991090655326843},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.37984195351600647},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35251757502555847},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1486978828907013},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09612277150154114},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-7-532","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-532","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-532","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17169146","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17169146","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pure.atira.dk:publications/a5ba9225-6025-489a-9acf-256f514a6990","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/a5ba9225-6025-489a-9acf-256f514a6990","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Garwood, K, Garwood, C, Hedeler, C, Griffiths, T, Swainston, N, Oliver, S G & Paton, N W 2006, 'Model-driven user interfaces for bioinformatics data resources: Regenerating the wheel as an alternative to reinventing it', BMC Bioinformatics, vol. 7, 532. https://doi.org/10.1186/1471-2105-7-532","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:7ec03cf3de844c8cb913a9b8e69aea3e","is_oa":true,"landing_page_url":"https://doaj.org/article/7ec03cf3de844c8cb913a9b8e69aea3e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 7, Iss 1, p 532 (2006)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1713253","is_oa":true,"landing_page_url":"http://doi.org/10.1186/1471-2105-7-532","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-7-532","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-532","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-532","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1520502684.pdf","grobid_xml":"https://content.openalex.org/works/W1520502684.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1486283310","https://openalex.org/W1560511009","https://openalex.org/W1573136363","https://openalex.org/W1584352659","https://openalex.org/W1598587145","https://openalex.org/W2004407704","https://openalex.org/W2006933206","https://openalex.org/W2017081644","https://openalex.org/W2020541351","https://openalex.org/W2042346975","https://openalex.org/W2095754390","https://openalex.org/W2096875491","https://openalex.org/W2101648527","https://openalex.org/W2117190895","https://openalex.org/W2132688679","https://openalex.org/W2133034723","https://openalex.org/W2141860801","https://openalex.org/W2145825942","https://openalex.org/W2168507922","https://openalex.org/W3140730010","https://openalex.org/W4210580032","https://openalex.org/W4285719527","https://openalex.org/W6602499392"],"related_works":["https://openalex.org/W96612179","https://openalex.org/W2770234245","https://openalex.org/W2566006169","https://openalex.org/W2987774938","https://openalex.org/W632915154","https://openalex.org/W4229499248","https://openalex.org/W4378874356","https://openalex.org/W2055733372","https://openalex.org/W1649706580","https://openalex.org/W3195608031"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,225,283,321],"proliferation":[2],"of":[3,13,36,100,145,162,191,202,211,267,278,288,297,304,310,323],"data":[4,25,107,113,153,254],"repositories":[5,324],"in":[6,10,69,242,281],"bioinformatics":[7,152,180],"has":[8,233],"resulted":[9],"the":[11,24,88,142,157,163,189,199,209,243,247,252],"development":[12,65,132,277],"numerous":[14],"interfaces":[15,94,147,175,280,299,311,328],"that":[16,26,63,122,173,264],"allow":[17],"scientists":[18],"to":[19,117,195,239,274],"browse,":[20],"search":[21],"and":[22,49,60,126,150,219,232,251,270,300,318,335],"analyse":[23],"they":[27,193,213],"contain.":[28],"Interfaces":[29,53,72],"typically":[30],"support":[31,275],"repository":[32,279],"access":[33,292],"by":[34,74,156],"means":[35,41],"web":[37],"pages,":[38],"but":[39],"other":[40],"are":[42,67,77,115,312,332],"also":[43],"used,":[44],"such":[45,85,105],"as":[46,106,230],"desktop":[47],"applications":[48],"command":[50,319],"line":[51],"tools.":[52],"often":[54,78],"duplicate":[55],"functionality":[56],"amongst":[57],"each":[58],"other,":[59],"this":[61],"implies":[62],"associated":[64],"activities":[66],"repeated":[68],"different":[70],"laboratories.":[71],"developed":[73,170],"public":[75],"laboratories":[76],"created":[79],"with":[80,128,179,198,294,325],"limited":[81],"developer":[82],"resources.":[83,133,181],"In":[84],"environments,":[86],"reducing":[87],"time":[89,192,212],"spent":[90],"on":[91,130,216,259],"creating":[92],"user":[93,146,203],"allows":[95],"for":[96,102,120,141,148,177],"a":[97,138,171,207,295,302],"better":[98],"deployment":[99],"resources":[101,114],"specialised":[103,222],"tasks,":[104],"integration":[108],"or":[109],"analysis.":[110],"Laboratories":[111],"maintaining":[112],"challenged":[116],"reconcile":[118],"requirements":[119,218,293],"software":[121,131,261],"is":[123,228,286],"reliable,":[124],"functional":[125],"flexible":[127],"limitations":[129],"RESULTS:":[134],"This":[135,182],"paper":[136],"proposes":[137],"model-driven":[139],"approach":[140,183],"partial":[143],"generation":[144],"searching":[149],"browsing":[151],"repositories.":[154,305],"Inspired":[155],"Model":[158],"Driven":[159],"Architecture":[160],"(MDA)":[161],"Object":[164],"Management":[165],"Group":[166],"(OMG),":[167],"we":[168],"have":[169,194,329],"system":[172,227],"generates":[174],"designed":[176],"use":[178,240],"helps":[184],"laboratory":[185],"domain":[186],"experts":[187],"decrease":[188],"amount":[190,210],"spend":[196,215],"dealing":[197],"repetitive":[200],"aspects":[201,266],"interface":[204],"development.":[205],"As":[206],"result,":[208],"can":[214,271],"gathering":[217],"helping":[220],"develop":[221],"features":[223],"increases.":[224],"resulting":[226],"known":[229],"Pierre,":[231,307],"been":[234,330],"validated":[235],"through":[236],"its":[237],"application":[238],"cases":[241],"life":[244],"sciences,":[245],"including":[246],"PEDRoDB":[248],"proteomics":[249],"database":[250,291],"e-Fungi":[253],"warehouse.":[255],"CONCLUSION:":[256],"MDAs":[257],"focus":[258],"generating":[260],"from":[262],"models":[263],"describe":[265],"service":[268],"capabilities,":[269],"be":[272],"applied":[273],"rapid":[276],"bioinformatics.":[282],"Pierre":[284,327],"MDA":[285],"capable":[287],"supporting":[289],"common":[290],"variety":[296,303],"auto-generated":[298],"across":[301],"With":[306],"four":[308],"kinds":[309,322],"generated:":[313],"web,":[314],"stand-alone":[315],"application,":[316],"text-menu,":[317],"line.":[320],"which":[326],"used":[331],"relational,":[333],"XML":[334],"object":[336],"databases.":[337]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
