{"id":"https://openalex.org/W2095686047","doi":"https://doi.org/10.1186/1471-2105-7-500","title":"PathogenMIPer: a tool for the design of molecular inversion probes to detect multiple pathogens","display_name":"PathogenMIPer: a tool for the design of molecular inversion probes to detect multiple pathogens","publication_year":2006,"publication_date":"2006-11-14","ids":{"openalex":"https://openalex.org/W2095686047","doi":"https://doi.org/10.1186/1471-2105-7-500","mag":"2095686047","pmid":"https://pubmed.ncbi.nlm.nih.gov/17105657"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-7-500","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-500","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-500","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-500","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028380133","display_name":"Sreedevi Thiyagarajan","orcid":"https://orcid.org/0000-0002-5166-4371"},"institutions":[{"id":"https://openalex.org/I1743320","display_name":"Palo Alto University","ror":"https://ror.org/04f812k67","country_code":"US","type":"education","lineage":["https://openalex.org/I1743320"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sreedevi Thiyagarajan","raw_affiliation_strings":["Stanford University, Palo Alto, CA, USA. sreedevi@stanford.edu <sreedevi@stanford.edu>","Stanford University Palo Alto, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford University, Palo Alto, CA, USA. sreedevi@stanford.edu <sreedevi@stanford.edu>","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Stanford University Palo Alto, USA","institution_ids":["https://openalex.org/I1743320","https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037302757","display_name":"Miloslav Karh\u00e1nek","orcid":"https://orcid.org/0000-0001-8310-681X"},"institutions":[{"id":"https://openalex.org/I1743320","display_name":"Palo Alto University","ror":"https://ror.org/04f812k67","country_code":"US","type":"education","lineage":["https://openalex.org/I1743320"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Miloslav Karhanek","raw_affiliation_strings":["Stanford University, Palo Alto, CA, USA","Stanford University Palo Alto, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford University, Palo Alto, CA, USA","institution_ids":["https://openalex.org/I1743320","https://openalex.org/I97018004"]},{"raw_affiliation_string":"Stanford University Palo Alto, USA","institution_ids":["https://openalex.org/I1743320","https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033020116","display_name":"Michael S. Akhras","orcid":"https://orcid.org/0000-0002-0494-1727"},"institutions":[{"id":"https://openalex.org/I1743320","display_name":"Palo Alto University","ror":"https://ror.org/04f812k67","country_code":"US","type":"education","lineage":["https://openalex.org/I1743320"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Akhras","raw_affiliation_strings":["Stanford University, Palo Alto, CA, USA","Stanford University Palo Alto, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford University, Palo Alto, CA, USA","institution_ids":["https://openalex.org/I1743320","https://openalex.org/I97018004"]},{"raw_affiliation_string":"Stanford University Palo Alto, USA","institution_ids":["https://openalex.org/I1743320","https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022830611","display_name":"Ronald W. Davis","orcid":"https://orcid.org/0000-0003-3123-2333"},"institutions":[{"id":"https://openalex.org/I1743320","display_name":"Palo Alto University","ror":"https://ror.org/04f812k67","country_code":"US","type":"education","lineage":["https://openalex.org/I1743320"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ronald W Davis","raw_affiliation_strings":["Stanford University, Palo Alto, CA, USA","Stanford University Palo Alto, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford University, Palo Alto, CA, USA","institution_ids":["https://openalex.org/I1743320","https://openalex.org/I97018004"]},{"raw_affiliation_string":"Stanford University Palo Alto, USA","institution_ids":["https://openalex.org/I1743320","https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071887998","display_name":"Nader Pourmand","orcid":"https://orcid.org/0000-0003-0251-9060"},"institutions":[{"id":"https://openalex.org/I1743320","display_name":"Palo Alto University","ror":"https://ror.org/04f812k67","country_code":"US","type":"education","lineage":["https://openalex.org/I1743320"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Nader Pourmand","raw_affiliation_strings":["Stanford University, Palo Alto, CA, USA","Stanford University Palo Alto, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford University, Palo Alto, CA, USA","institution_ids":["https://openalex.org/I1743320","https://openalex.org/I97018004"]},{"raw_affiliation_string":"Stanford University Palo Alto, USA","institution_ids":["https://openalex.org/I1743320","https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5071887998"],"corresponding_institution_ids":["https://openalex.org/I1743320","https://openalex.org/I97018004"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":1.7948,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.82449373,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"7","issue":"1","first_page":"500","last_page":"500"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10428","display_name":"Reproductive tract infections research","score":0.19580000638961792,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10428","display_name":"Reproductive tract infections research","score":0.19580000638961792,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.15459999442100525,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10146","display_name":"Cervical Cancer and HPV Research","score":0.07169999927282333,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6642891764640808},{"id":"https://openalex.org/keywords/genotyping","display_name":"Genotyping","score":0.656950831413269},{"id":"https://openalex.org/keywords/oligonucleotide","display_name":"Oligonucleotide","score":0.5229952335357666},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5190939903259277},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5142638087272644},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4990260601043701},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4670848846435547},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41498082876205444},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.283664733171463},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15995296835899353},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.09092047810554504}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6642891764640808},{"id":"https://openalex.org/C31467283","wikidata":"https://www.wikidata.org/wiki/Q912147","display_name":"Genotyping","level":4,"score":0.656950831413269},{"id":"https://openalex.org/C129312508","wikidata":"https://www.wikidata.org/wiki/Q133686","display_name":"Oligonucleotide","level":3,"score":0.5229952335357666},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5190939903259277},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5142638087272644},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4990260601043701},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4670848846435547},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41498082876205444},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.283664733171463},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15995296835899353},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.09092047810554504},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002583","descriptor_name":"Uterine Cervical Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002583","descriptor_name":"Uterine Cervical Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002583","descriptor_name":"Uterine Cervical Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009841","descriptor_name":"Oligonucleotides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009841","descriptor_name":"Oligonucleotides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009841","descriptor_name":"Oligonucleotides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012878","descriptor_name":"Skin Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012878","descriptor_name":"Skin Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012878","descriptor_name":"Skin Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015345","descriptor_name":"Oligonucleotide Probes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015345","descriptor_name":"Oligonucleotide Probes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015345","descriptor_name":"Oligonucleotide Probes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D027383","descriptor_name":"Papillomaviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D027383","descriptor_name":"Papillomaviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D027383","descriptor_name":"Papillomaviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-7-500","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-500","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-500","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17105657","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17105657","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:6fdd0e695dbe458d9733732aa7339563","is_oa":false,"landing_page_url":"https://doaj.org/article/6fdd0e695dbe458d9733732aa7339563","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 7, Iss 1, p 500 (2006)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1657037","is_oa":true,"landing_page_url":"http://doi.org/10.1186/1471-2105-7-500","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-7-500","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-500","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-500","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.5400000214576721}],"awards":[{"id":"https://openalex.org/G638571005","display_name":null,"funder_award_id":"P01-HG000205","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2095686047.pdf","grobid_xml":"https://content.openalex.org/works/W2095686047.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W41742921","https://openalex.org/W1510641627","https://openalex.org/W1966833356","https://openalex.org/W1969447706","https://openalex.org/W1983204423","https://openalex.org/W2000730583","https://openalex.org/W2009215649","https://openalex.org/W2055043387","https://openalex.org/W2062943552","https://openalex.org/W2070409908","https://openalex.org/W2099238982","https://openalex.org/W2102787606","https://openalex.org/W2104944388","https://openalex.org/W2112333437","https://openalex.org/W2118782342","https://openalex.org/W2118808324","https://openalex.org/W2119152967","https://openalex.org/W2124464500","https://openalex.org/W2130148978","https://openalex.org/W2132285289","https://openalex.org/W2142599475","https://openalex.org/W2145392172","https://openalex.org/W2145954121","https://openalex.org/W2149615023"],"related_works":["https://openalex.org/W1992546730","https://openalex.org/W2181469815","https://openalex.org/W2466223281","https://openalex.org/W2109411735","https://openalex.org/W1965493324","https://openalex.org/W1983114052","https://openalex.org/W2383022455","https://openalex.org/W569138996","https://openalex.org/W1988850575","https://openalex.org/W2016466608"],"abstract_inverted_index":{"BACKGROUND:":[0],"Here":[1],"we":[2],"describe":[3],"PathogenMIPer,":[4],"a":[5,62,88,92,113,152,192,211,225,254],"software":[6,23,136,212],"program":[7],"for":[8,15,59,81,123,126,129,213,218],"designing":[9,78,214],"molecular":[10,215],"inversion":[11,216],"probe":[12,39],"(MIP)":[13],"oligonucleotides":[14],"use":[16,60,130,233],"in":[17,61,73,77,87,101,131,224,237,250,253],"pathogen":[18],"identification":[19],"and":[20,26,49,52,105,164],"detection.":[21],"The":[22,35,65,135],"designs":[24],"unique":[25],"specific":[27,79],"oligonucleotide":[28],"probes":[29,58,80,217],"targeting":[30],"microbial":[31],"or":[32,248],"other":[33,106],"genomes.":[34],"tool":[36],"tailors":[37],"all":[38],"sequence":[40,99],"components":[41,55],"(including":[42],"target-specific":[43],"sequences,":[44,46],"barcode":[45],"universal":[47],"primers":[48],"restriction":[50],"sites)":[51],"combines":[53],"these":[54],"into":[56],"ready-to-order":[57],"MIP":[63,93,228,235],"assay.":[64,94],"system":[66],"can":[67,97,118],"harness":[68],"the":[69,82,110,144,173,177,238],"genetic":[70],"variability":[71],"available":[72],"an":[74],"entire":[75],"genome":[76,128],"detection":[83,145,219,239],"of":[84,146,169,184,196,220,234,242],"multiple":[85,201,221,251],"co-infections":[86],"single":[89,197],"tube":[90],"using":[91,172,227],"RESULTS:":[95],"PathogenMIPer":[96,178,209],"accept":[98],"data":[100],"FASTA":[102],"file":[103],"format,":[104],"parameter":[107],"inputs":[108],"from":[109],"user":[111,115],"through":[112,240],"graphical":[114],"interface.":[116],"It":[117,230],"design":[119],"MIPs":[120,174],"not":[121],"only":[122],"pathogens,":[124],"but":[125],"any":[127],"parallel":[132],"genomic":[133],"analyses.":[134],"was":[137],"validated":[138],"experimentally":[139],"by":[140,176],"applying":[141],"it":[142],"to":[143,179],"human":[147,160],"papilloma":[148],"virus":[149],"(HPV)":[150],"as":[151,198,200],"model":[153],"system,":[154],"which":[155],"is":[156,210],"associated":[157],"with":[158],"various":[159],"malignancies":[161],"including":[162],"cervical":[163],"skin":[165],"cancers.":[166],"Initial":[167],"tests":[168],"laboratory":[170],"samples":[171],"developed":[175],"recognize":[180],"24":[181],"different":[182],"types":[183],"HPVs":[185],"gave":[186],"very":[187],"promising":[188],"results,":[189],"detecting":[190],"even":[191],"small":[193],"viral":[194],"load":[195],"well":[199],"infections":[202],"(Akhras":[203],"et":[204],"al,":[205],"personal":[206],"communication).":[207],"CONCLUSION:":[208],"target":[222],"DNAs":[223],"sample":[226],"assays.":[229],"enables":[231],"broader":[232],"technology":[236],"genotyping":[241],"pathogens":[243],"that":[244],"are":[245],"complex,":[246],"difficult-to-amplify,":[247],"present":[249],"subtypes":[252],"sample.":[255]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
