{"id":"https://openalex.org/W2145483405","doi":"https://doi.org/10.1186/1471-2105-7-496","title":"methBLAST and methPrimerDB: web-tools for PCR based methylation analysis","display_name":"methBLAST and methPrimerDB: web-tools for PCR based methylation analysis","publication_year":2006,"publication_date":"2006-11-09","ids":{"openalex":"https://openalex.org/W2145483405","doi":"https://doi.org/10.1186/1471-2105-7-496","mag":"2145483405","pmid":"https://pubmed.ncbi.nlm.nih.gov/17094804"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-7-496","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-496","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-496","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-496","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072598822","display_name":"Filip Pattyn","orcid":"https://orcid.org/0000-0003-0858-6651"},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Filip Pattyn","raw_affiliation_strings":["Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000 Ghent, Belgium. Filip.Pattyn@UGent.be <Filip.Pattyn@UGent.be>","Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000 Ghent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000 Ghent, Belgium. Filip.Pattyn@UGent.be <Filip.Pattyn@UGent.be>","institution_ids":["https://openalex.org/I2801227569","https://openalex.org/I32597200"]},{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000 Ghent, Belgium","institution_ids":["https://openalex.org/I2801227569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050248506","display_name":"Jasmien Hoebeeck","orcid":null},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Jasmien Hoebeeck","raw_affiliation_strings":["Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000, Ghent, Belgium","Center for Medical Genetics, Ghent University Hospital, Ghent, BELGIUM"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000, Ghent, Belgium","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, Ghent, BELGIUM","institution_ids":["https://openalex.org/I2801227569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001591098","display_name":"Piet Robbrecht","orcid":null},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Piet Robbrecht","raw_affiliation_strings":["Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000, Ghent, Belgium","Center for Medical Genetics, Ghent University Hospital, Ghent, BELGIUM"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000, Ghent, Belgium","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, Ghent, BELGIUM","institution_ids":["https://openalex.org/I2801227569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112662596","display_name":"Evi Michels","orcid":null},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Evi Michels","raw_affiliation_strings":["Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000, Ghent, Belgium","Center for Medical Genetics, Ghent University Hospital, Ghent, BELGIUM"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000, Ghent, Belgium","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, Ghent, BELGIUM","institution_ids":["https://openalex.org/I2801227569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106426567","display_name":"Anne De Paepe","orcid":null},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Anne De Paepe","raw_affiliation_strings":["Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000, Ghent, Belgium","Center for Medical Genetics, Ghent University Hospital, Ghent, BELGIUM"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000, Ghent, Belgium","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, Ghent, BELGIUM","institution_ids":["https://openalex.org/I2801227569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061377422","display_name":"Guy Bottu","orcid":null},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Guy Bottu","raw_affiliation_strings":["Belgian EMBnet Node, Universit\u00e9 libre de Bruxelles, Campus de la Plaine, building NO-CP 257, Boulevard du Triomphe, 1050, Brussels, Belgium","Belgian EMBnet Node, Universit\u00e9 Libre de Bruxelles, Brussels, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Belgian EMBnet Node, Universit\u00e9 libre de Bruxelles, Campus de la Plaine, building NO-CP 257, Boulevard du Triomphe, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]},{"raw_affiliation_string":"Belgian EMBnet Node, Universit\u00e9 Libre de Bruxelles, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057933823","display_name":"David Coornaert","orcid":null},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"David Coornaert","raw_affiliation_strings":["Belgian EMBnet Node, Universit\u00e9 libre de Bruxelles, Campus de la Plaine, building NO-CP 257, Boulevard du Triomphe, 1050, Brussels, Belgium","Belgian EMBnet Node, Universit\u00e9 Libre de Bruxelles, Brussels, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Belgian EMBnet Node, Universit\u00e9 libre de Bruxelles, Campus de la Plaine, building NO-CP 257, Boulevard du Triomphe, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]},{"raw_affiliation_string":"Belgian EMBnet Node, Universit\u00e9 Libre de Bruxelles, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109877257","display_name":"Robert Herzog","orcid":null},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Robert Herzog","raw_affiliation_strings":["Belgian EMBnet Node, Universit\u00e9 libre de Bruxelles, Campus de la Plaine, building NO-CP 257, Boulevard du Triomphe, 1050, Brussels, Belgium","Belgian EMBnet Node, Universit\u00e9 Libre de Bruxelles, Brussels, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Belgian EMBnet Node, Universit\u00e9 libre de Bruxelles, Campus de la Plaine, building NO-CP 257, Boulevard du Triomphe, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]},{"raw_affiliation_string":"Belgian EMBnet Node, Universit\u00e9 Libre de Bruxelles, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032769404","display_name":"Frank Speleman","orcid":"https://orcid.org/0000-0002-6628-8559"},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Frank Speleman","raw_affiliation_strings":["Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000, Ghent, Belgium","Center for Medical Genetics, Ghent University Hospital, Ghent, BELGIUM"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000, Ghent, Belgium","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, Ghent, BELGIUM","institution_ids":["https://openalex.org/I2801227569"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086580140","display_name":"Jo Vandesompele","orcid":"https://orcid.org/0000-0001-6274-0184"},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Jo Vandesompele","raw_affiliation_strings":["Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000, Ghent, Belgium","Center for Medical Genetics, Ghent University Hospital, Ghent, BELGIUM"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000, Ghent, Belgium","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, Ghent, BELGIUM","institution_ids":["https://openalex.org/I2801227569"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5086580140"],"corresponding_institution_ids":["https://openalex.org/I2801227569"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.0805,"has_fulltext":true,"cited_by_count":37,"citation_normalized_percentile":{"value":0.75626614,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"7","issue":"1","first_page":"496","last_page":"496"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9025999903678894,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9025999903678894,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13157","display_name":"Cancer-related gene regulation","score":0.021299999207258224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.008899999782443047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.6450100541114807},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5375153422355652},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5341441035270691},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5207938551902771},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4676138162612915},{"id":"https://openalex.org/keywords/bisulfite-sequencing","display_name":"Bisulfite sequencing","score":0.4666065573692322},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.45745909214019775},{"id":"https://openalex.org/keywords/methylation","display_name":"Methylation","score":0.4492286443710327},{"id":"https://openalex.org/keywords/sequence-analysis","display_name":"Sequence analysis","score":0.44507065415382385},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4170989692211151},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2561943233013153},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.10394951701164246}],"concepts":[{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.6450100541114807},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5375153422355652},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5341441035270691},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5207938551902771},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4676138162612915},{"id":"https://openalex.org/C189235521","wikidata":"https://www.wikidata.org/wiki/Q4087270","display_name":"Bisulfite sequencing","level":5,"score":0.4666065573692322},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.45745909214019775},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.4492286443710327},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.44507065415382385},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4170989692211151},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2561943233013153},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.10394951701164246}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-7-496","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-496","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-496","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17094804","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17094804","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:archive.ugent.be:364618","is_oa":true,"landing_page_url":"http://hdl.handle.net/1854/LU-364618","pdf_url":"https://biblio.ugent.be/publication/364618/file/6795835","source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1471-2105","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:dipot.ulb.ac.be:2013/18379","is_oa":false,"landing_page_url":"http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/18379","pdf_url":null,"source":{"id":"https://openalex.org/S4306401063","display_name":"D\u00e9p\u00f4t institutionnel de l'Universit\u00e9 libre de Bruxelles (Universit\u00e9 Libre de Bruxelles)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I132053463","host_organization_name":"Universit\u00e9 Libre de Bruxelles","host_organization_lineage":["https://openalex.org/I132053463"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"B M C Bioinformatics, 7 (1","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:a238b0bf77d343bf9d937e7b9ab8a65f","is_oa":false,"landing_page_url":"https://doaj.org/article/a238b0bf77d343bf9d937e7b9ab8a65f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 7, Iss 1, p 496 (2006)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1654196","is_oa":true,"landing_page_url":"http://doi.org/10.1186/1471-2105-7-496","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-7-496","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-496","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-496","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.4000000059604645}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321730","display_name":"Fonds Wetenschappelijk Onderzoek","ror":"https://ror.org/03qtxy027"},{"id":"https://openalex.org/F4320322632","display_name":"Vlaamse Liga Tegen Kanker","ror":"https://ror.org/05fsa3j22"},{"id":"https://openalex.org/F4320327336","display_name":"Vlaamse regering","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2145483405.pdf","grobid_xml":"https://content.openalex.org/works/W2145483405.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1504303645","https://openalex.org/W1748696921","https://openalex.org/W1755052449","https://openalex.org/W1929295557","https://openalex.org/W1970833628","https://openalex.org/W1979273476","https://openalex.org/W1994465394","https://openalex.org/W2015778370","https://openalex.org/W2036986058","https://openalex.org/W2055043387","https://openalex.org/W2063110349","https://openalex.org/W2082777953","https://openalex.org/W2090262690","https://openalex.org/W2095812386","https://openalex.org/W2107580398","https://openalex.org/W2111183991","https://openalex.org/W2121417064","https://openalex.org/W2124767974","https://openalex.org/W2142966824","https://openalex.org/W2144936572","https://openalex.org/W4213060373","https://openalex.org/W4244818997"],"related_works":["https://openalex.org/W2902329290","https://openalex.org/W2052355316","https://openalex.org/W2128056428","https://openalex.org/W2046964473","https://openalex.org/W2107880877","https://openalex.org/W2151182744","https://openalex.org/W2024490794","https://openalex.org/W2221018455","https://openalex.org/W1998349112","https://openalex.org/W2054863651"],"abstract_inverted_index":{"BACKGROUND:":[0],"DNA":[1,28,58],"methylation":[2,23,38,94,153,222,253,286,299,316],"plays":[3],"an":[4],"important":[5],"role":[6],"in":[7,32,61,117,219,290,296,305],"development":[8,20],"and":[9,14,34,54,71,147,169,193,204,216,228,232,260,265,271,279],"tumorigenesis":[10],"by":[11,50,180],"epigenetic":[12,262],"modification":[13,59],"silencing":[15],"of":[16,21,149,293],"critical":[17],"genes.":[18],"The":[19,155],"PCR-based":[22,252],"assays":[24,300],"on":[25,110,210],"bisulphite":[26,119],"modified":[27,120],"heralded":[29],"a":[30,47,72,104,139,199,311],"breakthrough":[31],"speed":[33],"sensitivity":[35],"for":[36,92,144,248,283,314],"gene":[37,49,51,181],"analysis.":[39,287],"Despite":[40],"this":[41,99],"technological":[42],"advancement,":[43],"these":[44],"approaches":[45],"require":[46],"cumbersome":[48],"primer":[52,131,246,294],"design":[53],"experimental":[55],"validation.":[56],"Bisulphite":[57],"results":[60],"sequence":[62,74,84,105,126],"alterations":[63],"(all":[64],"unmethylated":[65],"cytosines":[66,78],"are":[67,267],"converted":[68],"into":[69],"uracils)":[70],"general":[73],"complexity":[75],"reduction":[76],"as":[77],"become":[79],"underrepresented.":[80],"Consequently,":[81],"standard":[82],"BLAST":[83,113],"homology":[85],"searches":[86,165],"cannot":[87],"be":[88,178,303],"applied":[89],"to":[90,123,162,170,201,206,238,256],"search":[91,107,312],"specific":[93],"primers.":[95],"RESULTS:":[96],"To":[97,226],"address":[98],"problem":[100],"we":[101,135],"developed":[102,138,276],"methBLAST,":[103],"similarity":[106],"program,":[108],"based":[109,152,173,285,298],"the":[111,130,145,211,217,221,234,243,249,306],"original":[112],"algorithm":[114],"but":[115],"querying":[116],"silico":[118,291],"genome":[121],"sequences":[122],"evaluate":[124],"oligonucleotide":[125],"similarities.":[127],"Apart":[128],"from":[129],"specificity":[132,295],"analysis":[133,254],"tool,":[134],"have":[136,275],"also":[137],"public":[140,160],"database":[141,167,235,244],"termed":[142],"methPrimerDB":[143,191,264,307],"storage":[146],"retrieval":[148],"validated":[150,315],"PCR":[151,284,297],"assays.":[154,317],"web":[156],"interface":[157],"allows":[158,289],"free":[159],"access":[161],"perform":[163],"methBLAST":[164,266,288],"or":[166,190],"queries":[168],"submit":[171],"user":[172],"information.":[174],"Database":[175],"records":[176,247],"can":[177,302],"searched":[179],"symbol,":[182],"nucleotide":[183],"sequence,":[184],"analytical":[185],"method":[186],"used,":[187],"Entrez":[188,202],"Gene":[189,203],"identifier,":[192],"submitter's":[194],"name.":[195],"Each":[196],"record":[197],"contains":[198,245],"link":[200],"PubMed":[205],"retrieve":[207],"additional":[208],"information":[209],"gene,":[212],"its":[213],"genomic":[214],"context":[215],"article":[218],"which":[220,309],"assay":[223],"was":[224],"described.":[225],"assure":[227],"maintain":[229],"data":[230],"integrity":[231],"accuracy,":[233],"is":[236],"linked":[237],"other":[239],"reference":[240],"databases.":[241],"Currently,":[242],"most":[250],"popular":[251],"methods":[255],"study":[257],"human,":[258],"mouse":[259],"rat":[261],"modifications.":[263],"available":[268,281],"at":[269],"http://medgen.ugent.be/methprimerdb":[270],"http://medgen.ugent.be/methblast.":[272],"CONCLUSION:":[273],"We":[274],"two":[277],"integrated":[278],"freely":[280],"web-tools":[282],"assessment":[292],"that":[301],"stored":[304],"database,":[308],"provides":[310],"portal":[313]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":3}],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2025-10-10T00:00:00"}
