{"id":"https://openalex.org/W2120319799","doi":"https://doi.org/10.1186/1471-2105-7-490","title":"XML schemas for common bioinformatic data types and their application in workflow systems","display_name":"XML schemas for common bioinformatic data types and their application in workflow systems","publication_year":2006,"publication_date":"2006-11-06","ids":{"openalex":"https://openalex.org/W2120319799","doi":"https://doi.org/10.1186/1471-2105-7-490","mag":"2120319799","pmid":"https://pubmed.ncbi.nlm.nih.gov/17087823"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-7-490","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-490","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-490","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-490","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018163655","display_name":"Philipp N Seibel","orcid":null},"institutions":[{"id":"https://openalex.org/I25974101","display_name":"University of W\u00fcrzburg","ror":"https://ror.org/00fbnyb24","country_code":"DE","type":"education","lineage":["https://openalex.org/I25974101"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Philipp N Seibel","raw_affiliation_strings":["Department of Bioinformatics, Biocenter, University of W\u00fcrzburg, W\u00fcrzburg, Germany. philipp.seibel@biozentrum.uni-wuerzburg.de <philipp.seibel@biozentrum.uni-wuerzburg.de>","Department of Bioinformatics, Biocenter, University of W\u00fcrzburg, W\u00fcrzburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Biocenter, University of W\u00fcrzburg, W\u00fcrzburg, Germany. philipp.seibel@biozentrum.uni-wuerzburg.de <philipp.seibel@biozentrum.uni-wuerzburg.de>","institution_ids":["https://openalex.org/I25974101"]},{"raw_affiliation_string":"Department of Bioinformatics, Biocenter, University of W\u00fcrzburg, W\u00fcrzburg, Germany","institution_ids":["https://openalex.org/I25974101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103015384","display_name":"Jan Walters Kruger","orcid":"https://orcid.org/0009-0006-4245-1653"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Jan Kr\u00fcger","raw_affiliation_strings":["Bioinformatics Group, Practical Computer Science Department, Faculty of Technology, Bielefeld University, Bielefeld, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Practical Computer Science Department, Faculty of Technology, Bielefeld University, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056497270","display_name":"Sven Hartmeier","orcid":null},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sven Hartmeier","raw_affiliation_strings":["Bioinformatics Group, Practical Computer Science Department, Faculty of Technology, Bielefeld University, Bielefeld, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Practical Computer Science Department, Faculty of Technology, Bielefeld University, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026579803","display_name":"Knut Schwarzer","orcid":null},"institutions":[{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Knut Schwarzer","raw_affiliation_strings":["Department of Bioinformatics, UKG, University of G\u00f6ttingen, G\u00f6ttingen, Germany","Department of Bioinformatics, UKG/University of G\u00f6ttingen, G\u00f6ttingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, UKG, University of G\u00f6ttingen, G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192"]},{"raw_affiliation_string":"Department of Bioinformatics, UKG/University of G\u00f6ttingen, G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029659971","display_name":"Kai L\u00f6wenthal","orcid":null},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kai L\u00f6wenthal","raw_affiliation_strings":["Bioinformatics Group, Practical Computer Science Department, Faculty of Technology, Bielefeld University, Bielefeld, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Practical Computer Science Department, Faculty of Technology, Bielefeld University, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068697138","display_name":"Henning Mersch","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Henning Mersch","raw_affiliation_strings":["Distributed Systems and Grid Computing, Central Institute for Applied Mathematics, Research Centre J\u00fclich, J\u00fclich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Distributed Systems and Grid Computing, Central Institute for Applied Mathematics, Research Centre J\u00fclich, J\u00fclich, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086202312","display_name":"Thomas Dandekar","orcid":"https://orcid.org/0000-0003-1886-7625"},"institutions":[{"id":"https://openalex.org/I25974101","display_name":"University of W\u00fcrzburg","ror":"https://ror.org/00fbnyb24","country_code":"DE","type":"education","lineage":["https://openalex.org/I25974101"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas Dandekar","raw_affiliation_strings":["Department of Bioinformatics, Biocenter, University of W\u00fcrzburg, W\u00fcrzburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Biocenter, University of W\u00fcrzburg, W\u00fcrzburg, Germany","institution_ids":["https://openalex.org/I25974101"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086259996","display_name":"Robert Giegerich","orcid":null},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Robert Giegerich","raw_affiliation_strings":["Bioinformatics Group, Practical Computer Science Department, Faculty of Technology, Bielefeld University, Bielefeld, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Practical Computer Science Department, Faculty of Technology, Bielefeld University, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5103015384"],"corresponding_institution_ids":["https://openalex.org/I20121455"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.5661,"has_fulltext":true,"cited_by_count":34,"citation_normalized_percentile":{"value":0.89241339,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"7","issue":"1","first_page":"490","last_page":"490"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.6851000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.6851000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.13950000703334808,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.02459999918937683,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7422226667404175},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6929713487625122},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.5999130010604858},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3434905409812927},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3392709195613861},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3293493986129761},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.32049596309661865},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.26588475704193115},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14948466420173645}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7422226667404175},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6929713487625122},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.5999130010604858},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3434905409812927},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3392709195613861},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3293493986129761},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.32049596309661865},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.26588475704193115},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14948466420173645}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1186/1471-2105-7-490","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-490","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-490","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17087823","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17087823","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pub.librecat.org:1773871","is_oa":true,"landing_page_url":"https://pub.uni-bielefeld.de/record/1773871","pdf_url":"https://pub.uni-bielefeld.de/download/1773871/2311332","source":{"id":"https://openalex.org/S4306401671","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Seibel PN, Kr\u00fcger J, Hartmeier S, et al. XML schemas for common bioinformatic data types and their application in workflow systems. &lt;em&gt;BMC Bioinformatics&lt;/em&gt;. 2006;7(1):490.","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:66eeee99ef5a4777a2c30aa019456e34","is_oa":true,"landing_page_url":"https://doaj.org/article/66eeee99ef5a4777a2c30aa019456e34","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 7, Iss 1, p 490 (2006)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:1827588","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC2001303","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:goescholar:1/4409","is_oa":true,"landing_page_url":"http://resolver.sub.uni-goettingen.de/purl?gs-1/4409","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journalArticle"},{"id":"pmh:oai:juser.fz-juelich.de:57085","is_oa":false,"landing_page_url":"http://juser.fz-juelich.de/record/57085","pdf_url":null,"source":{"id":"https://openalex.org/S4306401090","display_name":"JuSER (Forschungszentrum J\u00fclich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I171892758","host_organization_name":"Forschungszentrum J\u00fclich","host_organization_lineage":["https://openalex.org/I171892758"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC bioinformatics 7, 490 (2006). doi:10.1186/1471-2105-7-490","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:publications.goettingen-research-online.de:2/23724","is_oa":true,"landing_page_url":"https://resolver.sub.uni-goettingen.de/purl?gs-1/4409","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journal_article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2001303","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2001303","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-7-490","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-490","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-490","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320323390","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2120319799.pdf","grobid_xml":"https://content.openalex.org/works/W2120319799.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W1486283310","https://openalex.org/W1486540001","https://openalex.org/W1526127001","https://openalex.org/W1532202009","https://openalex.org/W1543796220","https://openalex.org/W1868460409","https://openalex.org/W1966697316","https://openalex.org/W1981101638","https://openalex.org/W1983792126","https://openalex.org/W1984594968","https://openalex.org/W1988496202","https://openalex.org/W1996902131","https://openalex.org/W2006933206","https://openalex.org/W2009736453","https://openalex.org/W2010440090","https://openalex.org/W2018120747","https://openalex.org/W2054251921","https://openalex.org/W2064632458","https://openalex.org/W2066831494","https://openalex.org/W2096525273","https://openalex.org/W2106293441","https://openalex.org/W2106882534","https://openalex.org/W2106957945","https://openalex.org/W2112092985","https://openalex.org/W2116155802","https://openalex.org/W2122190407","https://openalex.org/W2124281279","https://openalex.org/W2124354935","https://openalex.org/W2128374023","https://openalex.org/W2129842297","https://openalex.org/W2132688896","https://openalex.org/W2133820476","https://openalex.org/W2134283755","https://openalex.org/W2134861301","https://openalex.org/W2136480416","https://openalex.org/W2136735223","https://openalex.org/W2150306348","https://openalex.org/W2150908245","https://openalex.org/W2158719879","https://openalex.org/W2162002323","https://openalex.org/W2164926676","https://openalex.org/W2166187656","https://openalex.org/W2168103533"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W188202134","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W4255934811","https://openalex.org/W2465382974","https://openalex.org/W2010229520"],"abstract_inverted_index":{"BACKGROUND:":[0],"Today,":[1],"there":[2],"is":[3,48,121],"a":[4,41,55,97,118],"growing":[5],"need":[6,64],"in":[7,81,96,117,175],"bioinformatics":[8,82],"to":[9,32,35,162,172],"combine":[10],"available":[11,138],"software":[12],"tools":[13,29,53,171],"into":[14],"chains,":[15],"thus":[16,127],"building":[17],"complex":[18],"applications":[19],"from":[20],"existing":[21,166],"single-task":[22],"tools.":[23,133],"To":[24],"create":[25],"such":[26],"workflows,":[27],"the":[28,63,68,141,155],"involved":[30],"have":[31],"be":[33,145],"able":[34],"work":[36],"with":[37],"each":[38],"other's":[39],"data--therefore,":[40],"common":[42,66],"set":[43],"of":[44,58,123,131],"well-defined":[45],"data":[46,78],"formats":[47,116,136],"needed.":[49],"Unfortunately,":[50],"current":[51],"bioinformatic":[52,167],"use":[54],"great":[56],"variety":[57],"heterogeneous":[59],"formats.":[60],"RESULTS:":[61],"Acknowledging":[62],"for":[65],"formats,":[67],"Helmholtz":[69],"Open":[70],"BioInformatics":[71],"Technology":[72],"network":[73],"(HOBIT)":[74],"identified":[75],"several":[76],"basic":[77],"types":[79],"used":[80],"and":[83,93,111,154,165],"developed":[84],"appropriate":[85],"format":[86],"descriptions,":[87],"formally":[88],"defined":[89],"by":[90],"XML":[91,135,152,160],"schemas,":[92],"incorporated":[94],"them":[95],"Java":[98],"library":[99,143,157],"(BioDOM).":[100],"These":[101],"schemas":[102,153],"currently":[103],"cover":[104],"sequence,":[105],"sequence":[106],"alignment,":[107],"RNA":[108,112],"secondary":[109,113],"structure":[110,114],"alignment":[115],"form":[119],"that":[120],"independent":[122],"any":[124],"specific":[125],"program,":[126],"enabling":[128,169],"seamless":[129],"interoperation":[130],"different":[132],"All":[134],"are":[137],"at":[139,147],"http://bioschemas.sourceforge.net,":[140],"BioDOM":[142,156],"can":[144],"obtained":[146],"http://biodom.sourceforge.net.":[148],"CONCLUSION:":[149],"The":[150],"HOBIT":[151],"simplify":[158],"adding":[159],"support":[161],"newly":[163],"created":[164],"tools,":[168],"these":[170],"interoperate":[173],"seamlessly":[174],"workflow":[176],"scenarios.":[177]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}