{"id":"https://openalex.org/W2099392904","doi":"https://doi.org/10.1186/1471-2105-7-477","title":"Browsing repeats in genomes: Pygram and an application to non-coding region analysis","display_name":"Browsing repeats in genomes: Pygram and an application to non-coding region analysis","publication_year":2006,"publication_date":"2006-10-26","ids":{"openalex":"https://openalex.org/W2099392904","doi":"https://doi.org/10.1186/1471-2105-7-477","mag":"2099392904","pmid":"https://pubmed.ncbi.nlm.nih.gov/17067389"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-7-477","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-477","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-477","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-477","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103534128","display_name":"Patrick Durand","orcid":"https://orcid.org/0000-0002-5597-4457"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Patrick Durand","raw_affiliation_strings":["IRISA/INRIA, Campus de Beaulieu, 35042 Rennes Cedex, France. Patrick.Durand@irisa.fr","IRISA--INRIA, Rennes Cedex, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IRISA/INRIA, Campus de Beaulieu, 35042 Rennes Cedex, France. Patrick.Durand@irisa.fr","institution_ids":["https://openalex.org/I2802519937"]},{"raw_affiliation_string":"IRISA--INRIA, Rennes Cedex, France","institution_ids":["https://openalex.org/I1326498283","https://openalex.org/I2802519937"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074791594","display_name":"Fr\u00e9d\u00e9ric Mah\u00e9","orcid":"https://orcid.org/0000-0002-2808-0984"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210087209","display_name":"Ecosyst\u00e8mes, Biodiversit\u00e9, Evolution","ror":"https://ror.org/005fjj927","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2800285241","https://openalex.org/I3124938446","https://openalex.org/I4210087209","https://openalex.org/I4210088668","https://openalex.org/I4210107625","https://openalex.org/I4210107625","https://openalex.org/I4210117091","https://openalex.org/I4210148025","https://openalex.org/I4210148025","https://openalex.org/I4210150854","https://openalex.org/I4387156395","https://openalex.org/I4399657933","https://openalex.org/I56067802","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fr\u00e9d\u00e9ric Mah\u00e9","raw_affiliation_strings":["ECOBIO, CNRS UMR 6553, Campus de Beaulieu, 35042, Rennes Cedex, France","ECOBIO, Rennes Cedex, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ECOBIO, CNRS UMR 6553, Campus de Beaulieu, 35042, Rennes Cedex, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210087209","https://openalex.org/I56067802"]},{"raw_affiliation_string":"ECOBIO, Rennes Cedex, France","institution_ids":["https://openalex.org/I4210087209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035189344","display_name":"Anne-Sophie Valin","orcid":null},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I4210144610","display_name":"H\u00f4pital Saint-Louis","ror":"https://ror.org/049am9t04","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159","https://openalex.org/I4210144610"]},{"id":"https://openalex.org/I80043","display_name":"Institut Curie","ror":"https://ror.org/04t0gwh46","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I80043"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Anne-Sophie Valin","raw_affiliation_strings":["IRISA/INRIA, Campus de Beaulieu, 35042, Rennes Cedex, France","Institut Curie, Dept transfert, Quadrilat\u00e8re historique H\u00f4pital Saint Louis, Porte 13, 1 rue Claude Vellefaux, 75010, Paris, France","IRISA/INRIA, Rennes Cedex, France","Institut Curie, Dept transfert, Quadrilat\u00e8re historique H\u00f4pital Saint Louis, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IRISA/INRIA, Campus de Beaulieu, 35042, Rennes Cedex, France","institution_ids":["https://openalex.org/I1326498283","https://openalex.org/I2802519937"]},{"raw_affiliation_string":"Institut Curie, Dept transfert, Quadrilat\u00e8re historique H\u00f4pital Saint Louis, Porte 13, 1 rue Claude Vellefaux, 75010, Paris, France","institution_ids":["https://openalex.org/I4210144610"]},{"raw_affiliation_string":"IRISA/INRIA, Rennes Cedex, France","institution_ids":["https://openalex.org/I1326498283","https://openalex.org/I2802519937"]},{"raw_affiliation_string":"Institut Curie, Dept transfert, Quadrilat\u00e8re historique H\u00f4pital Saint Louis, Paris, France","institution_ids":["https://openalex.org/I4210144610","https://openalex.org/I80043"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103534129","display_name":"Jacques Nicolas","orcid":null},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Jacques Nicolas","raw_affiliation_strings":["IRISA/INRIA, Campus de Beaulieu, 35042, Rennes Cedex, France","IRISA--INRIA, Rennes Cedex, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IRISA/INRIA, Campus de Beaulieu, 35042, Rennes Cedex, France","institution_ids":["https://openalex.org/I1326498283","https://openalex.org/I2802519937"]},{"raw_affiliation_string":"IRISA--INRIA, Rennes Cedex, France","institution_ids":["https://openalex.org/I1326498283","https://openalex.org/I2802519937"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5103534129"],"corresponding_institution_ids":["https://openalex.org/I1326498283","https://openalex.org/I2802519937"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":1.014,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.7366881,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"7","issue":"1","first_page":"477","last_page":"477"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.6966000199317932,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.6966000199317932,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.1225999966263771,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.026200000196695328,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.8005458116531372},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6886776685714722},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5337463617324829},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49184632301330566},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.45600947737693787},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.45386481285095215},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.331855833530426},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.31416356563568115},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.29419657588005066},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0843561589717865}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.8005458116531372},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6886776685714722},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5337463617324829},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49184632301330566},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.45600947737693787},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.45386481285095215},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.331855833530426},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.31416356563568115},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.29419657588005066},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0843561589717865}],"mesh":[{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012091","descriptor_name":"Repetitive Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012091","descriptor_name":"Repetitive Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012091","descriptor_name":"Repetitive Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-7-477","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-477","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-477","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17067389","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17067389","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:hal-00129773v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00129773","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2006, 7, pp.477. &#x27E8;10.1186/1471-2105-7-477&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:f20a619b0fa14330a306267fe312ade8","is_oa":false,"landing_page_url":"https://doaj.org/article/f20a619b0fa14330a306267fe312ade8","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 7, Iss 1, p 477 (2006)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1635066","is_oa":true,"landing_page_url":"http://doi.org/10.1186/1471-2105-7-477","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-7-477","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-477","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-477","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2099392904.pdf","grobid_xml":"https://content.openalex.org/works/W2099392904.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W938539187","https://openalex.org/W1544600485","https://openalex.org/W1544726701","https://openalex.org/W1556105006","https://openalex.org/W1882010690","https://openalex.org/W1964918240","https://openalex.org/W1981828451","https://openalex.org/W1986171241","https://openalex.org/W1990487336","https://openalex.org/W1995703715","https://openalex.org/W1996423252","https://openalex.org/W2005877477","https://openalex.org/W2050557699","https://openalex.org/W2054984882","https://openalex.org/W2060604849","https://openalex.org/W2066558394","https://openalex.org/W2071398217","https://openalex.org/W2071501400","https://openalex.org/W2072687926","https://openalex.org/W2077190448","https://openalex.org/W2080043678","https://openalex.org/W2089052894","https://openalex.org/W2091694893","https://openalex.org/W2100990361","https://openalex.org/W2107513439","https://openalex.org/W2115379981","https://openalex.org/W2116628377","https://openalex.org/W2122954888","https://openalex.org/W2124281279","https://openalex.org/W2129103781","https://openalex.org/W2130396264","https://openalex.org/W2134204970","https://openalex.org/W2137441463","https://openalex.org/W2139791864","https://openalex.org/W2140046919","https://openalex.org/W2149588035","https://openalex.org/W2157785110","https://openalex.org/W2162210817","https://openalex.org/W2175834433","https://openalex.org/W2418040623","https://openalex.org/W2434820933","https://openalex.org/W2482507601","https://openalex.org/W2610179052","https://openalex.org/W4243495532","https://openalex.org/W4297045122"],"related_works":["https://openalex.org/W2168783124","https://openalex.org/W2126958666","https://openalex.org/W3138117676","https://openalex.org/W2581212852","https://openalex.org/W2053972265","https://openalex.org/W3092268165","https://openalex.org/W2175953840","https://openalex.org/W4213365651","https://openalex.org/W4229585093","https://openalex.org/W1759033142"],"abstract_inverted_index":{"BACKGROUND:":[0],"A":[1],"large":[2],"number":[3],"of":[4,25,54,85,104,113,122,147],"studies":[5],"on":[6,70],"genome":[7,59],"sequences":[8,17,56,88],"have":[9],"revealed":[10],"the":[11,19,52,71,105,120,145],"major":[12],"role":[13],"played":[14],"by":[15,75],"repeated":[16,55,87,138],"in":[18,57,110,116,150,154],"structure,":[20],"function,":[21],"dynamics":[22],"and":[23,74,119,127],"evolution":[24],"genomes.":[26,160],"In-depth":[27],"repeat":[28,67,152],"analysis":[29,112],"requires":[30],"specialized":[31],"methods,":[32],"including":[33],"visualization":[34,48,134],"techniques,":[35],"to":[36,136,143],"achieve":[37],"optimum":[38],"exploratory":[39],"power.":[40],"RESULTS:":[41],"This":[42],"article":[43],"presents":[44],"Pygram,":[45],"a":[46,66,80,132],"new":[47,133],"application":[49,62,141],"for":[50,100],"investigating":[51,151],"organization":[53,153],"complete":[58,106],"sequences.":[60],"The":[61],"projects":[63],"data":[64],"from":[65],"index":[68],"file":[69],"analysed":[72],"sequences,":[73,139],"combining":[76],"this":[77,140],"principle":[78],"with":[79,89],"query":[81],"system,":[82],"is":[83,108],"capable":[84],"locating":[86],"specific":[90],"properties.":[91],"In":[92],"short,":[93],"Pygram":[94],"provides":[95],"an":[96,111],"efficient,":[97],"graphical":[98],"browser":[99],"studying":[101],"repeats.":[102],"Implementation":[103],"configuration":[107],"illustrated":[109],"CRISPR":[114],"structures":[115],"Archaea":[117,126],"genomes":[118,156],"detection":[121],"horizontal":[123],"transfer":[124],"between":[125],"Viruses.":[128],"CONCLUSION:":[129],"By":[130],"proposing":[131],"environment":[135],"analyse":[137],"aims":[142],"increase":[144],"efficiency":[146],"laboratories":[148],"involved":[149],"single":[155],"or":[157],"across":[158],"several":[159]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":5}],"updated_date":"2026-08-19T15:00:24.278416","created_date":"2025-10-10T00:00:00"}
