{"id":"https://openalex.org/W1773825673","doi":"https://doi.org/10.1186/1471-2105-7-47","title":"Protein kinases associated with the yeast phosphoproteome","display_name":"Protein kinases associated with the yeast phosphoproteome","publication_year":2006,"publication_date":"2006-01-31","ids":{"openalex":"https://openalex.org/W1773825673","doi":"https://doi.org/10.1186/1471-2105-7-47","mag":"1773825673","pmid":"https://pubmed.ncbi.nlm.nih.gov/16445868"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-7-47","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-47","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-47","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-47","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027117569","display_name":"Ross I. Brinkworth","orcid":null},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Ross I Brinkworth","raw_affiliation_strings":["School of Molecular and Microbial Sciences, University of Queensland, Brisbane 4072, Australia. r.brinkworth1@uq.edu.au","School of Molecular and Microbial Sciences, University of Queensland, Brisbane, 4072, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Molecular and Microbial Sciences, University of Queensland, Brisbane 4072, Australia. r.brinkworth1@uq.edu.au","institution_ids":["https://openalex.org/I165143802"]},{"raw_affiliation_string":"School of Molecular and Microbial Sciences, University of Queensland, Brisbane, 4072, Australia","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001929684","display_name":"Alan L. Munn","orcid":"https://orcid.org/0000-0002-4085-9405"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Alan L Munn","raw_affiliation_strings":["Institute for Molecular Bioscience and Special Research Centre for Functional and Applied Genomics, University of Queensland, Brisbane, 4072, Australia","School of Biomedical Sciences, University of Queensland, Brisbane, 4072, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Bioscience and Special Research Centre for Functional and Applied Genomics, University of Queensland, Brisbane, 4072, Australia","institution_ids":["https://openalex.org/I165143802"]},{"raw_affiliation_string":"School of Biomedical Sciences, University of Queensland, Brisbane, 4072, Australia","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053221368","display_name":"Bo\u0161tjan Kobe","orcid":"https://orcid.org/0000-0001-9413-9166"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Bo\u0161tjan Kobe","raw_affiliation_strings":["Institute for Molecular Bioscience and Special Research Centre for Functional and Applied Genomics, University of Queensland, Brisbane, 4072, Australia","School of Molecular and Microbial Sciences, University of Queensland, Brisbane, 4072, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Bioscience and Special Research Centre for Functional and Applied Genomics, University of Queensland, Brisbane, 4072, Australia","institution_ids":["https://openalex.org/I165143802"]},{"raw_affiliation_string":"School of Molecular and Microbial Sciences, University of Queensland, Brisbane, 4072, Australia","institution_ids":["https://openalex.org/I165143802"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5053221368"],"corresponding_institution_ids":["https://openalex.org/I165143802"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.6207,"has_fulltext":true,"cited_by_count":45,"citation_normalized_percentile":{"value":0.8117652,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"7","issue":"1","first_page":"47","last_page":"47"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.5006999969482422,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.5006999969482422,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.2524000108242035,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.07900000363588333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cdc37","display_name":"CDC37","score":0.8240869045257568},{"id":"https://openalex.org/keywords/kinase","display_name":"Kinase","score":0.743218183517456},{"id":"https://openalex.org/keywords/protein-phosphorylation","display_name":"Protein phosphorylation","score":0.6422896385192871},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6319097876548767},{"id":"https://openalex.org/keywords/phosphorylation","display_name":"Phosphorylation","score":0.5762604475021362},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.5153840780258179},{"id":"https://openalex.org/keywords/grb10","display_name":"GRB10","score":0.5016241073608398},{"id":"https://openalex.org/keywords/mapk14","display_name":"MAPK14","score":0.42760562896728516},{"id":"https://openalex.org/keywords/cyclin-dependent-kinase-1","display_name":"Cyclin-dependent kinase 1","score":0.4194602966308594},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.41725364327430725},{"id":"https://openalex.org/keywords/protein-kinase-a","display_name":"Protein kinase A","score":0.4163597524166107},{"id":"https://openalex.org/keywords/saccharomyces-cerevisiae","display_name":"Saccharomyces cerevisiae","score":0.4109058678150177},{"id":"https://openalex.org/keywords/cyclin-dependent-kinase-2","display_name":"Cyclin-dependent kinase 2","score":0.2808673083782196},{"id":"https://openalex.org/keywords/yeast","display_name":"Yeast","score":0.19411081075668335},{"id":"https://openalex.org/keywords/insulin-receptor","display_name":"Insulin receptor","score":0.1301996111869812},{"id":"https://openalex.org/keywords/cell-cycle","display_name":"Cell cycle","score":0.12974193692207336},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.12393224239349365}],"concepts":[{"id":"https://openalex.org/C104615370","wikidata":"https://www.wikidata.org/wiki/Q18036151","display_name":"CDC37","level":5,"score":0.8240869045257568},{"id":"https://openalex.org/C184235292","wikidata":"https://www.wikidata.org/wiki/Q421851","display_name":"Kinase","level":2,"score":0.743218183517456},{"id":"https://openalex.org/C87325107","wikidata":"https://www.wikidata.org/wiki/Q7251493","display_name":"Protein phosphorylation","level":4,"score":0.6422896385192871},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6319097876548767},{"id":"https://openalex.org/C11960822","wikidata":"https://www.wikidata.org/wiki/Q242736","display_name":"Phosphorylation","level":2,"score":0.5762604475021362},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.5153840780258179},{"id":"https://openalex.org/C82183700","wikidata":"https://www.wikidata.org/wiki/Q14914347","display_name":"GRB10","level":5,"score":0.5016241073608398},{"id":"https://openalex.org/C163035849","wikidata":"https://www.wikidata.org/wiki/Q15326910","display_name":"MAPK14","level":5,"score":0.42760562896728516},{"id":"https://openalex.org/C120504264","wikidata":"https://www.wikidata.org/wiki/Q1147372","display_name":"Cyclin-dependent kinase 1","level":4,"score":0.4194602966308594},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.41725364327430725},{"id":"https://openalex.org/C97029542","wikidata":"https://www.wikidata.org/wiki/Q281417","display_name":"Protein kinase A","level":3,"score":0.4163597524166107},{"id":"https://openalex.org/C2777576037","wikidata":"https://www.wikidata.org/wiki/Q719725","display_name":"Saccharomyces cerevisiae","level":3,"score":0.4109058678150177},{"id":"https://openalex.org/C82495950","wikidata":"https://www.wikidata.org/wiki/Q14911732","display_name":"Cyclin-dependent kinase 2","level":4,"score":0.2808673083782196},{"id":"https://openalex.org/C2779222958","wikidata":"https://www.wikidata.org/wiki/Q45422","display_name":"Yeast","level":2,"score":0.19411081075668335},{"id":"https://openalex.org/C112446052","wikidata":"https://www.wikidata.org/wiki/Q422579","display_name":"Insulin receptor","level":4,"score":0.1301996111869812},{"id":"https://openalex.org/C29537977","wikidata":"https://www.wikidata.org/wiki/Q188941","display_name":"Cell cycle","level":3,"score":0.12974193692207336},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.12393224239349365},{"id":"https://openalex.org/C134018914","wikidata":"https://www.wikidata.org/wiki/Q162606","display_name":"Endocrinology","level":1,"score":0.0},{"id":"https://openalex.org/C2779306644","wikidata":"https://www.wikidata.org/wiki/Q2002370","display_name":"Insulin","level":2,"score":0.0},{"id":"https://openalex.org/C2777391703","wikidata":"https://www.wikidata.org/wiki/Q1053470","display_name":"Insulin resistance","level":3,"score":0.0},{"id":"https://openalex.org/C155985219","wikidata":"https://www.wikidata.org/wiki/Q409325","display_name":"Extracellular signal-regulated kinases","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-7-47","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-47","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-47","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16445868","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16445868","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:d13af91487f843a495a5d80af6d17771","is_oa":true,"landing_page_url":"https://doaj.org/article/d13af91487f843a495a5d80af6d17771","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 7, Iss 1, p 47 (2006)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1373605","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1373605","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:research-repository.griffith.edu.au:10072/27208","is_oa":true,"landing_page_url":"http://hdl.handle.net/10072/27208","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-7-47","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-47","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-47","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321995","display_name":"Queensland Government","ror":"https://ror.org/037405308"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"},{"id":"https://openalex.org/F4320334737","display_name":"National Medical Research Council","ror":"https://ror.org/04x3cxs03"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1773825673.pdf","grobid_xml":"https://content.openalex.org/works/W1773825673.grobid-xml"},"referenced_works_count":72,"referenced_works":["https://openalex.org/W149589726","https://openalex.org/W1493799579","https://openalex.org/W1521291324","https://openalex.org/W1569859724","https://openalex.org/W1968129408","https://openalex.org/W1978560744","https://openalex.org/W1979274256","https://openalex.org/W1981818282","https://openalex.org/W1988651629","https://openalex.org/W1990558801","https://openalex.org/W1993546170","https://openalex.org/W1994101634","https://openalex.org/W1994762541","https://openalex.org/W2004704197","https://openalex.org/W2005188492","https://openalex.org/W2011606343","https://openalex.org/W2014715442","https://openalex.org/W2017651048","https://openalex.org/W2019677361","https://openalex.org/W2023094266","https://openalex.org/W2023389323","https://openalex.org/W2026090765","https://openalex.org/W2029297782","https://openalex.org/W2037036397","https://openalex.org/W2039577125","https://openalex.org/W2045466386","https://openalex.org/W2052595603","https://openalex.org/W2056952404","https://openalex.org/W2059739056","https://openalex.org/W2062233253","https://openalex.org/W2065304353","https://openalex.org/W2080226687","https://openalex.org/W2083167946","https://openalex.org/W2084619201","https://openalex.org/W2094762942","https://openalex.org/W2095724872","https://openalex.org/W2099221935","https://openalex.org/W2101882623","https://openalex.org/W2106647330","https://openalex.org/W2108852246","https://openalex.org/W2110380412","https://openalex.org/W2110852847","https://openalex.org/W2113654464","https://openalex.org/W2113945036","https://openalex.org/W2116281786","https://openalex.org/W2117332681","https://openalex.org/W2119905730","https://openalex.org/W2122412269","https://openalex.org/W2129770809","https://openalex.org/W2131893639","https://openalex.org/W2134671651","https://openalex.org/W2134836140","https://openalex.org/W2141706916","https://openalex.org/W2142939427","https://openalex.org/W2144918538","https://openalex.org/W2148853951","https://openalex.org/W2152653671","https://openalex.org/W2155432019","https://openalex.org/W2155861397","https://openalex.org/W2157058776","https://openalex.org/W2160256138","https://openalex.org/W2164021052","https://openalex.org/W2166254467","https://openalex.org/W2166520458","https://openalex.org/W2166647018","https://openalex.org/W2166884712","https://openalex.org/W2167869241","https://openalex.org/W2170236418","https://openalex.org/W2171202879","https://openalex.org/W2263585194","https://openalex.org/W4236380144","https://openalex.org/W4245738070"],"related_works":["https://openalex.org/W1972375221","https://openalex.org/W2085289028","https://openalex.org/W1992764267","https://openalex.org/W2413913277","https://openalex.org/W2032109769","https://openalex.org/W2078483117","https://openalex.org/W2015924522","https://openalex.org/W1993902022","https://openalex.org/W2076421668","https://openalex.org/W2171369798"],"abstract_inverted_index":{"BACKGROUND:":[0],"Protein":[1],"phosphorylation":[2,27,40],"is":[3],"an":[4],"extremely":[5],"important":[6],"mechanism":[7],"of":[8,14,20,41,63,95,119,144,172,229],"cellular":[9,207,222],"regulation.":[10],"A":[11],"large-scale":[12],"study":[13,191],"phosphoproteins":[15,171,195,248],"in":[16,29,54,68,75,158,202],"a":[17,124,240],"whole-cell":[18],"lysate":[19],"Saccharomyces":[21],"cerevisiae":[22],"has":[23,133],"previously":[24,47,231],"identified":[25,43],"383":[26],"sites":[28],"216":[30],"peptide":[31],"sequences.":[32],"However,":[33],"the":[34,39,42,76,83,86,91,99,104,112,117,120,131,142,145,187,194,197,227],"protein":[35,66,146,176,199,233],"kinases":[36,67,147,177,200,210,246],"responsible":[37],"for":[38,129,156,186,242],"proteins":[44],"have":[45,205],"not":[46,212],"been":[48,134],"assigned.":[49],"RESULTS:":[50],"We":[51,115],"used":[52],"Predikin":[53],"combination":[55],"with":[56,98,175,178],"other":[57],"bioinformatic":[58],"tools,":[59],"to":[60,103,111],"predict":[61],"which":[62,130],"116":[64],"unique":[65],"yeast":[69],"phosphorylates":[70],"each":[71,96],"experimentally":[72,135],"determined":[73],"site":[74],"phosphoproteome.":[77],"The":[78,138,168,190],"prediction":[79,126,236],"was":[80],"based":[81],"on":[82,127],"match":[84],"between":[85,245],"phosphorylated":[87],"7-residue":[88],"sequence":[89],"and":[90,148,165,181,196,247],"predicted":[92,150],"substrate":[93,113,235],"specificity":[94],"kinase,":[97],"highest":[100],"weight":[101],"applied":[102],"residues":[105],"or":[106],"positions":[107],"that":[108,141,193,249],"contribute":[109],"most":[110],"specificity.":[114],"estimated":[116],"reliability":[118],"predictions":[121,169],"by":[122],"performing":[123],"parallel":[125],"phosphopeptides":[128],"kinase":[132,234],"determined.":[136],"CONCLUSION:":[137],"results":[139,225],"reveal":[140],"functions":[143,180,185],"their":[149],"phosphoprotein":[151],"substrates":[152],"are":[153,211],"often":[154],"correlated,":[155],"example":[157],"endocytosis,":[159],"cytokinesis,":[160],"transcription,":[161],"replication,":[162],"carbohydrate":[163],"metabolism":[164],"stress":[166],"response.":[167],"link":[170],"unknown":[173],"function":[174],"known":[179],"vice":[182],"versa,":[183],"suggesting":[184],"uncharacterized":[188],"proteins.":[189],"indicates":[192],"associated":[198],"represented":[201,213],"our":[203,230],"dataset":[204],"housekeeping":[206],"roles;":[208],"certain":[209],"because":[214],"they":[215],"may":[216],"only":[217],"be":[218,252],"activated":[219],"during":[220],"specific":[221],"responses.":[223],"Our":[224],"demonstrate":[226],"utility":[228],"reported":[232],"approach":[237],"(Predikin)":[238],"as":[239],"tool":[241],"establishing":[243],"links":[244],"can":[250],"subsequently":[251],"tested":[253],"experimentally.":[254]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
