{"id":"https://openalex.org/W2155225393","doi":"https://doi.org/10.1186/1471-2105-7-465","title":"Meta-All: a system for managing metabolic pathway information","display_name":"Meta-All: a system for managing metabolic pathway information","publication_year":2006,"publication_date":"2006-10-23","ids":{"openalex":"https://openalex.org/W2155225393","doi":"https://doi.org/10.1186/1471-2105-7-465","mag":"2155225393","pmid":"https://pubmed.ncbi.nlm.nih.gov/17059592"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-7-465","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-465","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-465","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-465","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040130297","display_name":"St\u00e9phan Weise","orcid":"https://orcid.org/0000-0003-4031-9131"},"institutions":[{"id":"https://openalex.org/I4210127902","display_name":"Leibniz Institute of Plant Genetics and Crop Plant Research","ror":"https://ror.org/02skbsp27","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210127902"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Stephan Weise","raw_affiliation_strings":["Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr, 3, 06466 Gatersleben, Germany. weise@ipk-gatersleben.de","Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr. 3, 06466, Gatersleben, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr, 3, 06466 Gatersleben, Germany. weise@ipk-gatersleben.de","institution_ids":["https://openalex.org/I4210127902"]},{"raw_affiliation_string":"Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr. 3, 06466, Gatersleben, Germany","institution_ids":["https://openalex.org/I4210127902"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017744726","display_name":"Ivo Gro\u00dfe","orcid":"https://orcid.org/0000-0001-5318-4825"},"institutions":[{"id":"https://openalex.org/I4210127902","display_name":"Leibniz Institute of Plant Genetics and Crop Plant Research","ror":"https://ror.org/02skbsp27","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210127902"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ivo Grosse","raw_affiliation_strings":["Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr. 3, 06466, Gatersleben, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr. 3, 06466, Gatersleben, Germany","institution_ids":["https://openalex.org/I4210127902"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108074172","display_name":"Christian Klukas","orcid":"https://orcid.org/0000-0001-7956-0294"},"institutions":[{"id":"https://openalex.org/I4210127902","display_name":"Leibniz Institute of Plant Genetics and Crop Plant Research","ror":"https://ror.org/02skbsp27","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210127902"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christian Klukas","raw_affiliation_strings":["Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr. 3, 06466, Gatersleben, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr. 3, 06466, Gatersleben, Germany","institution_ids":["https://openalex.org/I4210127902"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084810092","display_name":"Dirk Kosch\u00fctzki","orcid":null},"institutions":[{"id":"https://openalex.org/I4210127902","display_name":"Leibniz Institute of Plant Genetics and Crop Plant Research","ror":"https://ror.org/02skbsp27","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210127902"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dirk Kosch\u00fctzki","raw_affiliation_strings":["Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr. 3, 06466, Gatersleben, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr. 3, 06466, Gatersleben, Germany","institution_ids":["https://openalex.org/I4210127902"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058475324","display_name":"Uwe Scholz","orcid":"https://orcid.org/0000-0001-6113-3518"},"institutions":[{"id":"https://openalex.org/I4210127902","display_name":"Leibniz Institute of Plant Genetics and Crop Plant Research","ror":"https://ror.org/02skbsp27","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210127902"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Uwe Scholz","raw_affiliation_strings":["Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr. 3, 06466, Gatersleben, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr. 3, 06466, Gatersleben, Germany","institution_ids":["https://openalex.org/I4210127902"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109343398","display_name":"Falk Schreiber","orcid":null},"institutions":[{"id":"https://openalex.org/I4210127902","display_name":"Leibniz Institute of Plant Genetics and Crop Plant Research","ror":"https://ror.org/02skbsp27","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210127902"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Falk Schreiber","raw_affiliation_strings":["Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr. 3, 06466, Gatersleben, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr. 3, 06466, Gatersleben, Germany","institution_ids":["https://openalex.org/I4210127902"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068201400","display_name":"Bj\u00f6rn H. Junker","orcid":"https://orcid.org/0000-0001-5818-9764"},"institutions":[{"id":"https://openalex.org/I200870766","display_name":"Brookhaven National Laboratory","ror":"https://ror.org/02ex6cf31","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I200870766","https://openalex.org/I39565521","https://openalex.org/I4210142672"]},{"id":"https://openalex.org/I4210127902","display_name":"Leibniz Institute of Plant Genetics and Crop Plant Research","ror":"https://ror.org/02skbsp27","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210127902"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Bj\u00f6rn H Junker","raw_affiliation_strings":["Brookhaven National Laboratory, 50 Bell Avenue, Upton, NY, 11973, USA","Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr. 3, 06466, Gatersleben, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Brookhaven National Laboratory, 50 Bell Avenue, Upton, NY, 11973, USA","institution_ids":["https://openalex.org/I200870766"]},{"raw_affiliation_string":"Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr. 3, 06466, Gatersleben, Germany","institution_ids":["https://openalex.org/I4210127902"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5040130297"],"corresponding_institution_ids":["https://openalex.org/I4210127902"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.2269,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.77919489,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"7","issue":"1","first_page":"465","last_page":"465"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.8041999936103821,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.8041999936103821,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.06270000338554382,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.01510000042617321,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6495262980461121},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.48517781496047974},{"id":"https://openalex.org/keywords/oracle","display_name":"Oracle","score":0.4746297597885132},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.4734097421169281},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.47229841351509094},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.45558178424835205},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3814040720462799},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36859744787216187},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.32271355390548706},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3127700090408325},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28581154346466064}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6495262980461121},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.48517781496047974},{"id":"https://openalex.org/C55166926","wikidata":"https://www.wikidata.org/wiki/Q2892946","display_name":"Oracle","level":2,"score":0.4746297597885132},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.4734097421169281},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.47229841351509094},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.45558178424835205},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3814040720462799},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36859744787216187},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32271355390548706},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3127700090408325},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28581154346466064},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-7-465","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-465","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-465","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17059592","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17059592","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:osti.gov:1626329","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1626329","pdf_url":"https://www.osti.gov/servlets/purl/1626329","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:doaj.org/article:fcc06cd95d4e401b8010e70c886ef6f5","is_oa":false,"landing_page_url":"https://doaj.org/article/fcc06cd95d4e401b8010e70c886ef6f5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 7, Iss 1, p 465 (2006)","raw_type":"article"},{"id":"pmh:oai:kops.uni-konstanz.de:123456789/40688","is_oa":true,"landing_page_url":"http://nbn-resolving.de/urn:nbn:de:bsz:352-2--wrl18rolr9yw1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401487","display_name":"KOPS (University of Konstanz)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I189712700","host_organization_name":"University of Konstanz","host_organization_lineage":["https://openalex.org/I189712700"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:1635068","is_oa":true,"landing_page_url":"http://doi.org/10.1186/1471-2105-7-465","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-7-465","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-465","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-465","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2155225393.pdf","grobid_xml":"https://content.openalex.org/works/W2155225393.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W604279168","https://openalex.org/W839878123","https://openalex.org/W1482799780","https://openalex.org/W1507944889","https://openalex.org/W1532171086","https://openalex.org/W1601296974","https://openalex.org/W1946371345","https://openalex.org/W1963861745","https://openalex.org/W2000117114","https://openalex.org/W2082344308","https://openalex.org/W2096525273","https://openalex.org/W2114661156","https://openalex.org/W2121650210","https://openalex.org/W2125776280","https://openalex.org/W2131152203","https://openalex.org/W2133034723","https://openalex.org/W2134062730","https://openalex.org/W2144000913","https://openalex.org/W2146851730","https://openalex.org/W2147714160","https://openalex.org/W2149948001","https://openalex.org/W2150908245","https://openalex.org/W2165674132","https://openalex.org/W2714497087","https://openalex.org/W2917064891","https://openalex.org/W3136235976","https://openalex.org/W4230903726","https://openalex.org/W4240861547"],"related_works":["https://openalex.org/W4381571608","https://openalex.org/W2936116675","https://openalex.org/W2291027050","https://openalex.org/W2307569040","https://openalex.org/W1018570427","https://openalex.org/W1483126190","https://openalex.org/W2074162075","https://openalex.org/W4242570880","https://openalex.org/W2867972286","https://openalex.org/W2323949201"],"abstract_inverted_index":{"BACKGROUND:":[0],"Many":[1],"attempts":[2],"are":[3,20,65,95,131],"being":[4],"made":[5],"to":[6,115,121,157,299],"understand":[7],"biological":[8,21],"subjects":[9],"at":[10,91,315],"a":[11,92,257,269,281],"systems":[12,93],"level.":[13],"A":[14],"major":[15],"resource":[16],"for":[17,67,85,142,173,232,250,283],"these":[18,55],"approaches":[19],"databases,":[22],"storing":[23],"manifold":[24],"information":[25,140,171,186,230,246,266,285],"about":[26,247,286],"DNA,":[27],"RNA":[28],"and":[29,35,71,151,202,213,222,234,244,252,276,296,302,317,324],"protein":[30],"sequences":[31],"including":[32,195],"their":[33,123,138,159,306],"functional":[34],"structural":[36],"motifs,":[37],"molecular":[38,303],"markers,":[39],"mRNA":[40],"expression":[41],"levels,":[42],"metabolite":[43],"concentrations,":[44],"protein-protein":[45],"interactions,":[46],"phenotypic":[47],"traits":[48],"or":[49,110,153],"taxonomic":[50,203],"relationships.":[51],"The":[52],"use":[53],"of":[54,88,192,260,293,322],"databases":[56,105],"is":[57,112,148,165,178,280,297,310],"often":[58,113,166],"hampered":[59],"by":[60],"the":[61,99,190,228,241,248,254,265,291,313],"fact":[62],"that":[63,144,188],"they":[64,154],"designed":[66,183,298],"special":[68],"application":[69,259],"areas":[70],"thus":[72],"lack":[73],"universality.":[74],"Databases":[75],"on":[76,312],"metabolic":[77,175,193,287],"pathways,":[78,194],"which":[79,147,164],"provide":[80,227],"an":[81,169,185],"increasingly":[82],"important":[83],"foundation":[84],"many":[86],"analyses":[87],"biochemical":[89],"processes":[90],"level,":[94],"no":[96],"exception":[97],"from":[98],"rule.":[100],"Data":[101,205],"stored":[102,208,275],"in":[103,161,214,268,305],"central":[104],"such":[106],"as":[107],"KEGG,":[108],"BRENDA":[109],"SABIO-RK":[111],"limited":[114],"read-only":[116],"access.":[117],"If":[118],"experimentalists":[119],"want":[120],"store":[122,158],"own":[124,139,145],"data,":[125,146],"possibly":[126],"still":[127],"under":[128],"investigation,":[129],"there":[130],"two":[132],"possibilities.":[133],"They":[134],"can":[135,155,206,273,318],"either":[136],"develop":[137],"system":[141,172,187,231,282],"managing":[143,174,284],"very":[149],"time-consuming":[150],"costly,":[152],"try":[156],"data":[160,177,295],"existing":[162],"systems,":[163],"restricted.":[167],"Hence,":[168],"out-of-the-box":[170],"pathway":[176],"needed.":[179],"RESULTS:":[180],"We":[181,226],"have":[182],"META-ALL,":[184,261],"allows":[189],"management":[191],"reaction":[196],"kinetics,":[197],"detailed":[198,270],"locations,":[199],"environmental":[200],"factors":[201],"information.":[204],"be":[207,274,319],"together":[209],"with":[210],"quality":[211],"tags":[212],"different":[215],"parallel":[216],"versions.":[217],"META-ALL":[218,229,279],"uses":[219],"Oracle":[220,223],"DBMS":[221],"Application":[224],"Express.":[225],"download":[233],"use.":[235],"In":[236],"this":[237],"paper,":[238],"we":[239,262],"describe":[240],"database":[242],"structure":[243],"give":[245],"tools":[249],"submitting":[251],"accessing":[253],"data.":[255],"As":[256],"first":[258],"show":[263],"how":[264],"contained":[267],"kinetic":[271],"model":[272],"accessed.":[277],"CONCLUSION:":[278],"pathways.":[288],"It":[289,309],"facilitates":[290],"handling":[292],"pathway-related":[294],"help":[300],"biochemists":[301],"biologists":[304],"daily":[307],"research.":[308],"available":[311],"Web":[314],"http://bic-gh.de/meta-all":[316],"downloaded":[320],"free":[321],"charge":[323],"installed":[325],"locally.":[326]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":4}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
