{"id":"https://openalex.org/W2097999999","doi":"https://doi.org/10.1186/1471-2105-7-461","title":"inGeno \u2013 an integrated genome and ortholog viewer for improved genome to genome comparisons","display_name":"inGeno \u2013 an integrated genome and ortholog viewer for improved genome to genome comparisons","publication_year":2006,"publication_date":"2006-10-20","ids":{"openalex":"https://openalex.org/W2097999999","doi":"https://doi.org/10.1186/1471-2105-7-461","mag":"2097999999","pmid":"https://pubmed.ncbi.nlm.nih.gov/17054788"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-7-461","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-461","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-461","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-461","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008078406","display_name":"Chunguang Liang","orcid":"https://orcid.org/0000-0002-0305-2522"},"institutions":[{"id":"https://openalex.org/I25974101","display_name":"University of W\u00fcrzburg","ror":"https://ror.org/00fbnyb24","country_code":"DE","type":"education","lineage":["https://openalex.org/I25974101"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Chunguang Liang","raw_affiliation_strings":["Department of Bioinformatics, Biocenter, University of W\u00fcrzburg, Am Hubland, D-97074 W\u00fcrzburg, Germany. liang@biozentrum.uni-wuerzburg.de","Department of Bioinformatics, Biocenter, University of W\u00fcrzburg, Am Hubland, W\u00fcrzburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Biocenter, University of W\u00fcrzburg, Am Hubland, D-97074 W\u00fcrzburg, Germany. liang@biozentrum.uni-wuerzburg.de","institution_ids":["https://openalex.org/I25974101"]},{"raw_affiliation_string":"Department of Bioinformatics, Biocenter, University of W\u00fcrzburg, Am Hubland, W\u00fcrzburg, Germany","institution_ids":["https://openalex.org/I25974101"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086202312","display_name":"Thomas Dandekar","orcid":"https://orcid.org/0000-0003-1886-7625"},"institutions":[{"id":"https://openalex.org/I1303691731","display_name":"European Molecular Biology Organization","ror":"https://ror.org/04wfr2810","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I1303691731"]},{"id":"https://openalex.org/I25974101","display_name":"University of W\u00fcrzburg","ror":"https://ror.org/00fbnyb24","country_code":"DE","type":"education","lineage":["https://openalex.org/I25974101"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Thomas Dandekar","raw_affiliation_strings":["Department of Bioinformatics, Biocenter, University of W\u00fcrzburg, Am Hubland, D-97074, W\u00fcrzburg, Germany","EMBL, Postbox 102209, D-69012, Heidelberg, Germany","EMBL, Heidelberg, Germany","Department of Bioinformatics, Biocenter, University of W\u00fcrzburg, Am Hubland, W\u00fcrzburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Biocenter, University of W\u00fcrzburg, Am Hubland, D-97074, W\u00fcrzburg, Germany","institution_ids":["https://openalex.org/I25974101"]},{"raw_affiliation_string":"EMBL, Postbox 102209, D-69012, Heidelberg, Germany","institution_ids":["https://openalex.org/I1303691731"]},{"raw_affiliation_string":"EMBL, Heidelberg, Germany","institution_ids":["https://openalex.org/I1303691731"]},{"raw_affiliation_string":"Department of Bioinformatics, Biocenter, University of W\u00fcrzburg, Am Hubland, W\u00fcrzburg, Germany","institution_ids":["https://openalex.org/I25974101"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5008078406","https://openalex.org/A5086202312"],"corresponding_institution_ids":["https://openalex.org/I1303691731","https://openalex.org/I25974101"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.8182,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.71002992,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"7","issue":"1","first_page":"461","last_page":"461"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.3506999909877777,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.3506999909877777,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.15139999985694885,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.06669999659061432,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.8122968077659607},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.6146548986434937},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5499030947685242},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5466788411140442},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5052316784858704},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4793844223022461},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.47089627385139465},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4615173041820526},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4589375853538513},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.45665302872657776},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.43248701095581055},{"id":"https://openalex.org/keywords/genome-project","display_name":"Genome project","score":0.41912245750427246},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.33387070894241333},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3002784848213196},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.29157108068466187},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1342737078666687}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.8122968077659607},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.6146548986434937},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5499030947685242},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5466788411140442},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5052316784858704},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4793844223022461},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.47089627385139465},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4615173041820526},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4589375853538513},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.45665302872657776},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.43248701095581055},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.41912245750427246},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.33387070894241333},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3002784848213196},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.29157108068466187},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1342737078666687},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004925","descriptor_name":"Escherichia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004925","descriptor_name":"Escherichia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004925","descriptor_name":"Escherichia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004925","descriptor_name":"Escherichia","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004925","descriptor_name":"Escherichia","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004925","descriptor_name":"Escherichia","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004925","descriptor_name":"Escherichia","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D004925","descriptor_name":"Escherichia","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D004925","descriptor_name":"Escherichia","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D008087","descriptor_name":"Listeria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008087","descriptor_name":"Listeria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008087","descriptor_name":"Listeria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-7-461","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-461","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-461","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17054788","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17054788","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:96b6a201d5ac4491a561a0ceb73c1574","is_oa":true,"landing_page_url":"https://doaj.org/article/96b6a201d5ac4491a561a0ceb73c1574","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 7, Iss 1, p 461 (2006)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:544191","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC1635569","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1635569","is_oa":true,"landing_page_url":"http://doi.org/10.1186/1471-2105-7-461","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-7-461","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-461","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-461","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6000000238418579,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G2313231964","display_name":null,"funder_award_id":"SFB 688","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8252325237","display_name":null,"funder_award_id":"TR 34-A5","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2097999999.pdf","grobid_xml":"https://content.openalex.org/works/W2097999999.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1895949598","https://openalex.org/W1991330646","https://openalex.org/W2025399691","https://openalex.org/W2033512236","https://openalex.org/W2052004561","https://openalex.org/W2064632458","https://openalex.org/W2074231493","https://openalex.org/W2087064593","https://openalex.org/W2097600896","https://openalex.org/W2099836442","https://openalex.org/W2107282968","https://openalex.org/W2110291136","https://openalex.org/W2114048159","https://openalex.org/W2121860020","https://openalex.org/W2122479165","https://openalex.org/W2126569085","https://openalex.org/W2140055375","https://openalex.org/W2141923006","https://openalex.org/W2143249496","https://openalex.org/W2143286856","https://openalex.org/W2144866873","https://openalex.org/W2147902743","https://openalex.org/W2152331922","https://openalex.org/W2155237411","https://openalex.org/W2156273926","https://openalex.org/W2167708455","https://openalex.org/W2188689126"],"related_works":["https://openalex.org/W1565527690","https://openalex.org/W1493660383","https://openalex.org/W2759519215","https://openalex.org/W2353729507","https://openalex.org/W4318240630","https://openalex.org/W2350466590","https://openalex.org/W1542620732","https://openalex.org/W3031625301","https://openalex.org/W4386771068","https://openalex.org/W2080758876"],"abstract_inverted_index":{"BACKGROUND:":[0],"Systematic":[1],"genome":[2,17,36,100,146,152],"comparisons":[3,26,93],"are":[4,65,166],"an":[5],"important":[6,28],"tool":[7,75],"to":[8,143,188,216,231],"reveal":[9,144],"gene":[10],"functions,":[11],"pathogenic":[12],"features,":[13],"metabolic":[14],"pathways":[15],"and":[16,32,51,54,62,102,106,132,154,159,164,172,174,190,201,207,212,219,226],"evolution":[18],"in":[19,68,78,120,176,181,192],"the":[20,45,69,149],"era":[21],"of":[22,47,71],"post-genomics.":[23],"Furthermore,":[24],"such":[25],"provide":[27],"clues":[29],"for":[30,91],"vaccines":[31],"drug":[33],"development.":[34],"Existing":[35],"comparison":[37,109],"software":[38,74,223],"often":[39],"lacks":[40],"accurate":[41],"information":[42],"on":[43,56],"orthologs,":[44],"function":[46],"similar":[48,145],"genes":[49],"identified":[50],"genome-wide":[52],"reports":[53],"lists":[55],"specific":[57,233],"functions.":[58],"All":[59],"these":[60],"features":[61],"further":[63],"analyses":[64],"provided":[66],"here":[67],"context":[70],"a":[72,86],"modular":[73,222],"\"inGeno\"":[76],"written":[77],"Java":[79],"with":[80],"Biojava":[81],"subroutines.":[82],"RESULTS:":[83],"InGeno":[84],"provides":[85,151],"user-friendly":[87,225],"interactive":[88],"visualization":[89,155],"platform":[90],"sequence":[92,117],"(comprehensive":[94],"reciprocal":[95],"protein--protein":[96],"comparisons)":[97],"between":[98],"complete":[99],"sequences":[101],"all":[103],"associated":[104],"annotations":[105,163],"features.":[107],"The":[108],"data":[110],"can":[111,185],"be":[112,186,217],"acquired":[113],"from":[114],"several":[115],"different":[116],"analysis":[118,125],"programs":[119],"flexible":[121],"formats.":[122],"Automatic":[123],"dot-plot":[124],"includes":[126],"output":[127],"reduction,":[128],"filtering,":[129],"ortholog":[130],"testing":[131],"linear":[133],"regression,":[134],"followed":[135],"by":[136],"smart":[137],"clustering":[138],"(local":[139],"collinear":[140,157],"blocks;":[141],"LCBs)":[142],"regions.":[147],"Further,":[148],"system":[150],"alignment":[153],"editor,":[156],"relationships":[158],"strain-specific":[160],"islands.":[161],"Specific":[162],"functions":[165],"parsed,":[167],"recognized,":[168],"clustered,":[169],"logically":[170],"concatenated":[171],"visualized":[173],"summarized":[175],"reports.":[177],"CONCLUSION:":[178],"As":[179],"shown":[180],"this":[182],"study,":[183],"inGeno":[184],"applied":[187],"study":[189],"compare":[191],"particular":[193],"prokaryotic":[194],"genomes":[195],"against":[196],"each":[197],"other":[198],"(gram":[199],"positive":[200],"negative":[202],"as":[203,205],"well":[204],"close":[206],"more":[208],"distantly":[209],"related":[210],"species)":[211],"has":[213],"been":[214],"proven":[215],"sensitive":[218],"accurate.":[220],"This":[221],"is":[224],"easily":[227],"accommodates":[228],"new":[229],"routines":[230],"meet":[232],"user-defined":[234],"requirements.":[235]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}