{"id":"https://openalex.org/W1521650410","doi":"https://doi.org/10.1186/1471-2105-7-439","title":"TreeDyn: towards dynamic graphics and annotations for analyses of trees","display_name":"TreeDyn: towards dynamic graphics and annotations for analyses of trees","publication_year":2006,"publication_date":"2006-10-10","ids":{"openalex":"https://openalex.org/W1521650410","doi":"https://doi.org/10.1186/1471-2105-7-439","mag":"1521650410","pmid":"https://pubmed.ncbi.nlm.nih.gov/17032440"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-7-439","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-439","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-439","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-439","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076387774","display_name":"Fran\u00e7ois Chevenet","orcid":"https://orcid.org/0000-0003-2622-6596"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210087127","display_name":"Maladies Infectieuses et Vecteurs: \u00c9cologie, G\u00e9n\u00e9tique, \u00c9volution et Contr\u00f4le","ror":"https://ror.org/00357kh21","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I19894307","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210087127","https://openalex.org/I4210088668","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210107625","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Fran\u00e7ois Chevenet","raw_affiliation_strings":["Laboratoire de G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses, UMR CNRS/IRD 2724, IRD, 911 avenue Agropolis, BP 64501, 34394 Montpellier Cedex 5, France. chevenet@ird.fr","Laboratoire de G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses, UMR CNRS/IRD 2724, Montpellier, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses, UMR CNRS/IRD 2724, IRD, 911 avenue Agropolis, BP 64501, 34394 Montpellier Cedex 5, France. chevenet@ird.fr","institution_ids":["https://openalex.org/I4210166444","https://openalex.org/I1294671590","https://openalex.org/I4210087127"]},{"raw_affiliation_string":"Laboratoire de G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses, UMR CNRS/IRD 2724, Montpellier, France","institution_ids":["https://openalex.org/I4210087127","https://openalex.org/I4210166444","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060161630","display_name":"Christine Brun","orcid":"https://orcid.org/0000-0002-5563-6765"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210120427","display_name":"Institut de Biologie du D\u00e9veloppement Marseille","ror":"https://ror.org/02me5cy06","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210120427"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Christine Brun","raw_affiliation_strings":["Institut de Biologie du D\u00e9veloppement de Marseille-Luminy, CNRS UMR 6216, Parc Scientifique et Technologique de Luminy, Case 907, 13288, Marseille, Cedex 9, France","Institut de Biologie du D\u00e9veloppement de Marseille-Luminy, CNRS UMR 6216, Parc Scientifique et Technologique de Luminy, Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut de Biologie du D\u00e9veloppement de Marseille-Luminy, CNRS UMR 6216, Parc Scientifique et Technologique de Luminy, Case 907, 13288, Marseille, Cedex 9, France","institution_ids":["https://openalex.org/I4210120427","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Institut de Biologie du D\u00e9veloppement de Marseille-Luminy, CNRS UMR 6216, Parc Scientifique et Technologique de Luminy, Marseille, France","institution_ids":["https://openalex.org/I4210120427","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068827445","display_name":"Anne\u2010Laure Ba\u00f1uls","orcid":"https://orcid.org/0000-0002-2106-8667"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210087127","display_name":"Maladies Infectieuses et Vecteurs: \u00c9cologie, G\u00e9n\u00e9tique, \u00c9volution et Contr\u00f4le","ror":"https://ror.org/00357kh21","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I19894307","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210087127","https://openalex.org/I4210088668","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210107625","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Anne-Laure Ba\u00f1uls","raw_affiliation_strings":["Laboratoire de G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses, UMR CNRS/IRD 2724, IRD, 911 avenue Agropolis, BP, 64501,34394, Montpellier, Cedex 5, France","Laboratoire de G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses, UMR CNRS/IRD 2724, Montpellier, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses, UMR CNRS/IRD 2724, IRD, 911 avenue Agropolis, BP, 64501,34394, Montpellier, Cedex 5, France","institution_ids":["https://openalex.org/I4210166444","https://openalex.org/I1294671590","https://openalex.org/I4210087127"]},{"raw_affiliation_string":"Laboratoire de G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses, UMR CNRS/IRD 2724, Montpellier, France","institution_ids":["https://openalex.org/I4210087127","https://openalex.org/I4210166444","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105413680","display_name":"Bernard Jacq","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210120427","display_name":"Institut de Biologie du D\u00e9veloppement Marseille","ror":"https://ror.org/02me5cy06","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210120427"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Bernard Jacq","raw_affiliation_strings":["Institut de Biologie du D\u00e9veloppement de Marseille-Luminy, CNRS UMR 6216, Parc Scientifique et Technologique de Luminy, Case 907, 13288, Marseille, Cedex 9, France","Institut de Biologie du D\u00e9veloppement de Marseille-Luminy, CNRS UMR 6216, Parc Scientifique et Technologique de Luminy, Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut de Biologie du D\u00e9veloppement de Marseille-Luminy, CNRS UMR 6216, Parc Scientifique et Technologique de Luminy, Case 907, 13288, Marseille, Cedex 9, France","institution_ids":["https://openalex.org/I4210120427","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Institut de Biologie du D\u00e9veloppement de Marseille-Luminy, CNRS UMR 6216, Parc Scientifique et Technologique de Luminy, Marseille, France","institution_ids":["https://openalex.org/I4210120427","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009594049","display_name":"Richard Christen","orcid":"https://orcid.org/0000-0002-3396-4362"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I201841394","display_name":"Universit\u00e9 C\u00f4te d'Azur","ror":"https://ror.org/019tgvf94","country_code":"FR","type":"education","lineage":["https://openalex.org/I201841394"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Richard Christen","raw_affiliation_strings":["Laboratoire de Biologie Virtuelle, CNRS UMR 6543, Universit\u00e9 de Nice Sophia Antipolis, Centre de Biochimie, Campus Valrose, 06108, Nice, France","Laboratoire de Biologie Virtuelle, CNRS UMR 6543, Universit\u00e9 de Nice Sophia Antipolis, Centre de Biochimie, Campus Valrose, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Biologie Virtuelle, CNRS UMR 6543, Universit\u00e9 de Nice Sophia Antipolis, Centre de Biochimie, Campus Valrose, 06108, Nice, France","institution_ids":["https://openalex.org/I201841394","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire de Biologie Virtuelle, CNRS UMR 6543, Universit\u00e9 de Nice Sophia Antipolis, Centre de Biochimie, Campus Valrose, France","institution_ids":["https://openalex.org/I201841394","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5076387774"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210087127","https://openalex.org/I4210166444"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":27.7651,"has_fulltext":true,"cited_by_count":1082,"citation_normalized_percentile":{"value":0.99771759,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"7","issue":"1","first_page":"439","last_page":"439"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.2718000113964081,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.2718000113964081,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.0828000009059906,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.06480000168085098,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8116689920425415},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.7056317329406738},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6360707879066467},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6313916444778442},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5791447162628174},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.54571932554245},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.5076080560684204},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.466044545173645},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.42443785071372986},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics","score":0.4132290184497833},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37811392545700073},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.25726020336151123},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.23362267017364502},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.19562044739723206}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8116689920425415},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.7056317329406738},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6360707879066467},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6313916444778442},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5791447162628174},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.54571932554245},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.5076080560684204},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.466044545173645},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.42443785071372986},{"id":"https://openalex.org/C77660652","wikidata":"https://www.wikidata.org/wiki/Q150971","display_name":"Computer graphics","level":2,"score":0.4132290184497833},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37811392545700073},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.25726020336151123},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.23362267017364502},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.19562044739723206},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003663","descriptor_name":"Decision Trees","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003663","descriptor_name":"Decision Trees","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003663","descriptor_name":"Decision Trees","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-7-439","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-439","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-439","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17032440","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17032440","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:hal-00321061v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00321061","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-7-439","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:cff06e7a96ae47fabc10da2c5dcd21cd","is_oa":true,"landing_page_url":"https://doaj.org/article/cff06e7a96ae47fabc10da2c5dcd21cd","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 7, Iss 1, p 439 (2006)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1615880","is_oa":true,"landing_page_url":"http://doi.org/10.1186/1471-2105-7-439","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-7-439","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-439","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-439","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.6399999856948853,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1521650410.pdf","grobid_xml":"https://content.openalex.org/works/W1521650410.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W137863291","https://openalex.org/W1497135357","https://openalex.org/W1505046138","https://openalex.org/W1641177182","https://openalex.org/W1741410789","https://openalex.org/W1828639634","https://openalex.org/W1956694423","https://openalex.org/W1995488846","https://openalex.org/W1996437477","https://openalex.org/W2023996174","https://openalex.org/W2037456534","https://openalex.org/W2055196116","https://openalex.org/W2057081312","https://openalex.org/W2074494141","https://openalex.org/W2086029509","https://openalex.org/W2095604271","https://openalex.org/W2100412820","https://openalex.org/W2101472386","https://openalex.org/W2101829413","https://openalex.org/W2111303992","https://openalex.org/W2112928083","https://openalex.org/W2119321863","https://openalex.org/W2130675236","https://openalex.org/W2130962401","https://openalex.org/W2134342348","https://openalex.org/W2141497252","https://openalex.org/W2143746383","https://openalex.org/W2149048649","https://openalex.org/W2149057166","https://openalex.org/W2150297520","https://openalex.org/W2155351266","https://openalex.org/W2160135458","https://openalex.org/W2160445700","https://openalex.org/W2577202510","https://openalex.org/W2737451252","https://openalex.org/W4240512255","https://openalex.org/W4242123375","https://openalex.org/W4255125582"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W2046765700","https://openalex.org/W2390396596","https://openalex.org/W2167838283"],"abstract_inverted_index":{"BACKGROUND:":[0],"Analyses":[1],"of":[2,30,66,106,112,123,151,173,185,194,222,230,235,238,278],"biomolecules":[3],"for":[4,79,97,209,227,259],"biodiversity,":[5],"phylogeny":[6],"or":[7,42,81,131,153,158,165,182,271,281],"structure/function":[8],"studies":[9],"often":[10],"use":[11,29,76,221],"graphical":[12,95,146,174,186,212,269],"tree":[13,17,24,52,57,68,201,251,260,282],"representations.":[14],"Many":[15],"powerful":[16,207],"editors":[18],"are":[19,70,108],"now":[20],"available,":[21],"but":[22],"existing":[23],"visualization":[25,252],"tools":[26,258],"make":[27],"little":[28],"meta-information":[31,266],"related":[32],"to":[33,75,125,160,198,241,273],"the":[34,51,67,110,121,149,171,192,204,220,233],"entities":[35],"under":[36],"study":[37],"such":[38],"as":[39],"taxonomic":[40],"descriptions":[41],"gene":[43],"functions":[44],"that":[45],"can":[46],"hardly":[47],"be":[48],"encoded":[49],"within":[50],"itself":[53],"(if":[54],"using":[55,91,167],"popular":[56],"formats).":[58],"Consequently,":[59],"a":[60,89,136,199,215,236,250],"tedious":[61],"manual":[62,163],"analysis":[63],"and":[64,93,99,115,135,144,188,253,262,264,276],"post-processing":[65],"graphics":[69,124],"required":[71],"if":[72],"one":[73],"needs":[74],"external":[77],"information":[78,189],"displaying":[80],"investigating":[82],"trees.":[83,102,246],"RESULTS:":[84],"We":[85],"have":[86],"developed":[87],"TreeDyn,":[88],"tool":[90,255],"annotations":[92,277],"dynamic":[94,268],"methods":[96],"editing":[98],"analyzing":[100],"multiple":[101,113,116],"The":[103],"main":[104],"features":[105],"TreeDyn":[107,223,248],"1)":[109],"management":[111],"windows":[114],"trees":[117,196,280],"per":[118],"window,":[119],"2)":[120],"export":[122],"several":[126],"standard":[127],"file":[128],"formats":[129],"with":[130],"without":[132],"HTML":[133],"encapsulation":[134],"new":[137],"format":[138],"called":[139],"TGF,":[140],"which":[141,256],"enables":[142],"saving":[143],"restoring":[145],"analysis,":[147],"3)":[148],"projection":[150],"texts":[152],"symbols":[154],"facing":[155],"leaf":[156,178],"labels":[157,179],"linked":[159],"nodes,":[161],"through":[162,224,267],"pasting":[164],"by":[166,183,203],"annotation":[168,254,263],"files,":[169],"4)":[170],"highlight":[172,193],"elements":[175,187],"after":[176],"querying":[177],"(or":[180],"annotations)":[181],"selection":[184],"extraction,":[190],"5)":[191],"targeted":[195],"according":[197],"source":[200],"browsed":[202],"user,":[205],"6)":[206],"scripts":[208,226],"automating":[210],"repetitive":[211],"tasks,":[213],"7)":[214],"command":[216],"line":[217],"interpreter":[218],"enabling":[219],"CGI":[225],"online":[228],"building":[229],"trees,":[231],"8)":[232],"inclusion":[234],"library":[237],"packages":[239],"dedicated":[240],"specific":[242],"research":[243],"fields":[244],"involving":[245],"CONCLUSION:":[247],"is":[249],"includes":[257],"manipulation":[261],"uses":[265],"operators":[270],"scripting":[272],"help":[274],"analyses":[275],"single":[279],"collections.":[283]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":26},{"year":2024,"cited_by_count":36},{"year":2023,"cited_by_count":44},{"year":2022,"cited_by_count":43},{"year":2021,"cited_by_count":88},{"year":2020,"cited_by_count":56},{"year":2019,"cited_by_count":59},{"year":2018,"cited_by_count":71},{"year":2017,"cited_by_count":68},{"year":2016,"cited_by_count":70},{"year":2015,"cited_by_count":85},{"year":2014,"cited_by_count":78},{"year":2013,"cited_by_count":68},{"year":2012,"cited_by_count":70}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
