{"id":"https://openalex.org/W1851422093","doi":"https://doi.org/10.1186/1471-2105-7-43","title":"SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms","display_name":"SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms","publication_year":2006,"publication_date":"2006-01-26","ids":{"openalex":"https://openalex.org/W1851422093","doi":"https://doi.org/10.1186/1471-2105-7-43","mag":"1851422093","pmid":"https://pubmed.ncbi.nlm.nih.gov/16438721"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-7-43","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-43","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-43","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-43","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051934428","display_name":"Tim Van den Bulcke","orcid":"https://orcid.org/0000-0002-2578-7773"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Tim Van den Bulcke","raw_affiliation_strings":["ESAT-SCD, KU Leuven, Kasteelpark Arenberg 10, B-3001 Heverlee, Belgium. tim.vandenbulcke@esat.kuleuven.be","ESAT-SCD, K.U.Leuven, Kasteelpark Arenberg 10, B-3001, Heverlee, Belgium"],"affiliations":[{"raw_affiliation_string":"ESAT-SCD, KU Leuven, Kasteelpark Arenberg 10, B-3001 Heverlee, Belgium. tim.vandenbulcke@esat.kuleuven.be","institution_ids":["https://openalex.org/I99464096"]},{"raw_affiliation_string":"ESAT-SCD, K.U.Leuven, Kasteelpark Arenberg 10, B-3001, Heverlee, Belgium","institution_ids":["https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047520245","display_name":"Koen Van Leemput","orcid":"https://orcid.org/0000-0001-6466-5309"},"institutions":[{"id":"https://openalex.org/I149213910","display_name":"University of Antwerp","ror":"https://ror.org/008x57b05","country_code":"BE","type":"education","lineage":["https://openalex.org/I149213910"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Koenraad Van Leemput","raw_affiliation_strings":["ISLab, Dept. Math. and Comp. Sc, University of Antwerp, Middelheimlaan 1, B-2020, Antwerpen, Belgium"],"affiliations":[{"raw_affiliation_string":"ISLab, Dept. Math. and Comp. Sc, University of Antwerp, Middelheimlaan 1, B-2020, Antwerpen, Belgium","institution_ids":["https://openalex.org/I149213910"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021078170","display_name":"Bart Naudts","orcid":null},"institutions":[{"id":"https://openalex.org/I149213910","display_name":"University of Antwerp","ror":"https://ror.org/008x57b05","country_code":"BE","type":"education","lineage":["https://openalex.org/I149213910"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Bart Naudts","raw_affiliation_strings":["ISLab, Dept. Math. and Comp. Sc, University of Antwerp, Middelheimlaan 1, B-2020, Antwerpen, Belgium"],"affiliations":[{"raw_affiliation_string":"ISLab, Dept. Math. and Comp. Sc, University of Antwerp, Middelheimlaan 1, B-2020, Antwerpen, Belgium","institution_ids":["https://openalex.org/I149213910"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047438325","display_name":"Piet van Remortel","orcid":null},"institutions":[{"id":"https://openalex.org/I149213910","display_name":"University of Antwerp","ror":"https://ror.org/008x57b05","country_code":"BE","type":"education","lineage":["https://openalex.org/I149213910"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Piet van Remortel","raw_affiliation_strings":["ISLab, Dept. Math. and Comp. Sc, University of Antwerp, Middelheimlaan 1, B-2020, Antwerpen, Belgium"],"affiliations":[{"raw_affiliation_string":"ISLab, Dept. Math. and Comp. Sc, University of Antwerp, Middelheimlaan 1, B-2020, Antwerpen, Belgium","institution_ids":["https://openalex.org/I149213910"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023379069","display_name":"Hongwu Ma","orcid":"https://orcid.org/0000-0001-5325-2314"},"institutions":[{"id":"https://openalex.org/I4210115305","display_name":"German Center for Infection Research","ror":"https://ror.org/028s4q594","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210115305","https://openalex.org/I4405256427"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hongwu Ma","raw_affiliation_strings":["Dept. of Genome Analysis, German Research Center for Biotechnology, Mascheroder Weg 1, D-38124, Braunschweig, Germany"],"affiliations":[{"raw_affiliation_string":"Dept. of Genome Analysis, German Research Center for Biotechnology, Mascheroder Weg 1, D-38124, Braunschweig, Germany","institution_ids":["https://openalex.org/I4210115305"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010812165","display_name":"A. Verschoren","orcid":null},"institutions":[{"id":"https://openalex.org/I149213910","display_name":"University of Antwerp","ror":"https://ror.org/008x57b05","country_code":"BE","type":"education","lineage":["https://openalex.org/I149213910"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Alain Verschoren","raw_affiliation_strings":["ISLab, Dept. Math. and Comp. Sc, University of Antwerp, Middelheimlaan 1, B-2020, Antwerpen, Belgium"],"affiliations":[{"raw_affiliation_string":"ISLab, Dept. Math. and Comp. Sc, University of Antwerp, Middelheimlaan 1, B-2020, Antwerpen, Belgium","institution_ids":["https://openalex.org/I149213910"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018814006","display_name":"Bart De Moor","orcid":"https://orcid.org/0000-0002-1154-5028"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Bart De Moor","raw_affiliation_strings":["ESAT-SCD, K.U.Leuven, Kasteelpark Arenberg 10, B-3001, Heverlee, Belgium"],"affiliations":[{"raw_affiliation_string":"ESAT-SCD, K.U.Leuven, Kasteelpark Arenberg 10, B-3001, Heverlee, Belgium","institution_ids":["https://openalex.org/I99464096"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044805939","display_name":"Kathleen Marchal","orcid":"https://orcid.org/0000-0002-2169-4588"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Kathleen Marchal","raw_affiliation_strings":["CMPG, Dept. Microbial and Molecular Systems, K.U.Leuven, Kasteelpark Arenberg 20, B-3001, Heverlee, Belgium","ESAT-SCD, K.U.Leuven, Kasteelpark Arenberg 10, B-3001, Heverlee, Belgium"],"affiliations":[{"raw_affiliation_string":"CMPG, Dept. Microbial and Molecular Systems, K.U.Leuven, Kasteelpark Arenberg 20, B-3001, Heverlee, Belgium","institution_ids":["https://openalex.org/I99464096"]},{"raw_affiliation_string":"ESAT-SCD, K.U.Leuven, Kasteelpark Arenberg 10, B-3001, Heverlee, Belgium","institution_ids":["https://openalex.org/I99464096"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5044805939"],"corresponding_institution_ids":["https://openalex.org/I99464096"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":5.7213,"has_fulltext":true,"cited_by_count":297,"citation_normalized_percentile":{"value":0.9677166,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"7","issue":"1","first_page":"43","last_page":"43"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/network-topology","display_name":"Network topology","score":0.7309199571609497},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6756880879402161},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.628576397895813},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.6111560463905334},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5756077766418457},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5633075833320618},{"id":"https://openalex.org/keywords/synthetic-data","display_name":"Synthetic data","score":0.5341474413871765},{"id":"https://openalex.org/keywords/generator","display_name":"Generator (circuit theory)","score":0.5225845575332642},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.44401922821998596},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.4419938027858734},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.44017642736434937},{"id":"https://openalex.org/keywords/synthetic-biology","display_name":"Synthetic biology","score":0.4319559931755066},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36216825246810913},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.30049455165863037},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.2623513340950012},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.20847588777542114},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19224002957344055},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.18246790766716003},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17187774181365967},{"id":"https://openalex.org/keywords/power","display_name":"Power (physics)","score":0.10585308074951172}],"concepts":[{"id":"https://openalex.org/C199845137","wikidata":"https://www.wikidata.org/wiki/Q145490","display_name":"Network topology","level":2,"score":0.7309199571609497},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6756880879402161},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.628576397895813},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.6111560463905334},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5756077766418457},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5633075833320618},{"id":"https://openalex.org/C160920958","wikidata":"https://www.wikidata.org/wiki/Q7662746","display_name":"Synthetic data","level":2,"score":0.5341474413871765},{"id":"https://openalex.org/C2780992000","wikidata":"https://www.wikidata.org/wiki/Q17016113","display_name":"Generator (circuit theory)","level":3,"score":0.5225845575332642},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.44401922821998596},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.4419938027858734},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.44017642736434937},{"id":"https://openalex.org/C191908910","wikidata":"https://www.wikidata.org/wiki/Q862838","display_name":"Synthetic biology","level":2,"score":0.4319559931755066},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36216825246810913},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.30049455165863037},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.2623513340950012},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.20847588777542114},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19224002957344055},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.18246790766716003},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17187774181365967},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.10585308074951172},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012986","descriptor_name":"Software Validation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012986","descriptor_name":"Software Validation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012986","descriptor_name":"Software Validation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1186/1471-2105-7-43","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-43","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-43","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16438721","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16438721","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:lirias2repo.kuleuven.be:123456789/44984","is_oa":true,"landing_page_url":"https://lirias.kuleuven.be/handle/123456789/44984","pdf_url":"https://lirias.kuleuven.be/bitstream/123456789/44984/1/44984_1471-2105-7-43.pdf","source":{"id":"https://openalex.org/S4306401954","display_name":"Lirias (KU Leuven)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I99464096","host_organization_name":"KU Leuven","host_organization_lineage":["https://openalex.org/I99464096"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"BMC Bioinformatics, vol. 7 (43), Art.No. ARTN 43, (1-12)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:repository.helmholtz-hzi.de:10033/14201","is_oa":true,"landing_page_url":"http://hdl.handle.net/10033/14201","pdf_url":"https://repository.helmholtz-hzi.de/bitstream/10033/14201/1/Van%20den%20Bulcke%20et%20al.pdf","source":{"id":"https://openalex.org/S7407055272","display_name":"Helmholtz Zentrum f\u00fcr Infektionsforschung Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:c:irua:57446","is_oa":false,"landing_page_url":"https://hdl.handle.net/10067/574460151162165141","pdf_url":null,"source":{"id":"https://openalex.org/S4377196495","display_name":"Anet (University of Antwerp)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149213910","host_organization_name":"University of Antwerp","host_organization_lineage":["https://openalex.org/I149213910"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:archive.ugent.be:3187191","is_oa":true,"landing_page_url":"https://biblio.ugent.be/publication/3187191","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1471-2105","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:f6d5cf48128241089c8d2ea53e7c9eed","is_oa":true,"landing_page_url":"https://doaj.org/article/f6d5cf48128241089c8d2ea53e7c9eed","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 7, Iss 1, p 43 (2006)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:525654","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1373604","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-7-43","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-43","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-43","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1638137056","display_name":null,"funder_award_id":"FWO-Vl","funder_id":"https://openalex.org/F4320321730","funder_display_name":"Fonds Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G3231420740","display_name":null,"funder_award_id":"postdoc","funder_id":"https://openalex.org/F4320321730","funder_display_name":"Fonds Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G5388806002","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320321730","funder_display_name":"Fonds Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G6867476589","display_name":null,"funder_award_id":"FWO-Vlaanderen","funder_id":"https://openalex.org/F4320321730","funder_display_name":"Fonds Wetenschappelijk Onderzoek"}],"funders":[{"id":"https://openalex.org/F4320321730","display_name":"Fonds Wetenschappelijk Onderzoek","ror":"https://ror.org/03qtxy027"},{"id":"https://openalex.org/F4320327336","display_name":"Vlaamse regering","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1851422093.pdf","grobid_xml":"https://content.openalex.org/works/W1851422093.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1530109463","https://openalex.org/W1577525534","https://openalex.org/W1598117745","https://openalex.org/W1889077695","https://openalex.org/W1967996893","https://openalex.org/W2008107402","https://openalex.org/W2040482262","https://openalex.org/W2048324994","https://openalex.org/W2069898971","https://openalex.org/W2079829409","https://openalex.org/W2080201763","https://openalex.org/W2095622082","https://openalex.org/W2100603120","https://openalex.org/W2100668965","https://openalex.org/W2109990759","https://openalex.org/W2110699703","https://openalex.org/W2112090702","https://openalex.org/W2120034091","https://openalex.org/W2125631472","https://openalex.org/W2126669894","https://openalex.org/W2137474062","https://openalex.org/W2145068337","https://openalex.org/W2151616455","https://openalex.org/W2153208554","https://openalex.org/W2153624566","https://openalex.org/W2154664365","https://openalex.org/W2155408323","https://openalex.org/W2613467369","https://openalex.org/W2905110430","https://openalex.org/W4312512934"],"related_works":["https://openalex.org/W2155492529","https://openalex.org/W4252504573","https://openalex.org/W4212865750","https://openalex.org/W4385510321","https://openalex.org/W2101315668","https://openalex.org/W15348386","https://openalex.org/W1987184800","https://openalex.org/W2314128295","https://openalex.org/W1509942269","https://openalex.org/W2131550814"],"abstract_inverted_index":{"This":[0],"network":[1,30],"generation":[2],"technique":[3],"offers":[4],"a":[5],"valid":[6],"alternative":[7],"to":[8,33],"existing":[9],"methods.":[10],"The":[11,36],"topological":[12],"characteristics":[13,22],"of":[14,23,28,41],"the":[15,21,29],"generated":[16],"networks":[17],"more":[18],"closely":[19],"resemble":[20],"real":[24],"transcriptional":[25],"networks.":[26,35],"Simulation":[27],"scales":[31],"well":[32],"large":[34],"generator":[37],"models":[38],"different":[39],"types":[40],"biological":[42],"interactions":[43],"and":[44],"produces":[45],"biologically":[46],"plausible":[47],"synthetic":[48],"gene":[49],"expression":[50],"data.":[51]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":16},{"year":2018,"cited_by_count":13},{"year":2017,"cited_by_count":20},{"year":2016,"cited_by_count":16},{"year":2015,"cited_by_count":16},{"year":2014,"cited_by_count":21},{"year":2013,"cited_by_count":19},{"year":2012,"cited_by_count":20}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
