{"id":"https://openalex.org/W1480287196","doi":"https://doi.org/10.1186/1471-2105-7-356","title":"New directions in biomedical text annotation: definitions, guidelines and corpus construction","display_name":"New directions in biomedical text annotation: definitions, guidelines and corpus construction","publication_year":2006,"publication_date":"2006-07-25","ids":{"openalex":"https://openalex.org/W1480287196","doi":"https://doi.org/10.1186/1471-2105-7-356","mag":"1480287196","pmid":"https://pubmed.ncbi.nlm.nih.gov/16867190"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-7-356","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-356","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-356","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-356","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111895206","display_name":"W. John Wilbur","orcid":null},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"W John Wilbur","raw_affiliation_strings":["National Center for Biotechnology Information NLM, NIH, Bethesda, MD, USA. wilbur@ncbi.nlm.nih.gov","National Center for Biotechnology Information NLM, NIH, Bethesda, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information NLM, NIH, Bethesda, MD, USA. wilbur@ncbi.nlm.nih.gov","institution_ids":["https://openalex.org/I4210109390"]},{"raw_affiliation_string":"National Center for Biotechnology Information NLM, NIH, Bethesda, USA","institution_ids":["https://openalex.org/I4210109390"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004739989","display_name":"Andrey Rzhetsky","orcid":"https://orcid.org/0000-0001-6959-7405"},"institutions":[{"id":"https://openalex.org/I4210151462","display_name":"New York Genome Center","ror":"https://ror.org/05wf2ga96","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210151462"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrey Rzhetsky","raw_affiliation_strings":["Department of Biomedical Informatics, Center for Computational Biology and Bioinformatics, Judith P. Sulzberger MD Columbia Genome Center, and Department of Biology, Columbia University, New York, NY, USA","Department of Biomedical Informatics, Center for Computational Biology and Bioinformatics, Judith P. Sulzberger MD Columbia Genome Center, and Department of Biology, Columbia University, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Center for Computational Biology and Bioinformatics, Judith P. Sulzberger MD Columbia Genome Center, and Department of Biology, Columbia University, New York, NY, USA","institution_ids":["https://openalex.org/I4210151462","https://openalex.org/I78577930"]},{"raw_affiliation_string":"Department of Biomedical Informatics, Center for Computational Biology and Bioinformatics, Judith P. Sulzberger MD Columbia Genome Center, and Department of Biology, Columbia University, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043310715","display_name":"Hagit Shatkay","orcid":"https://orcid.org/0000-0001-6953-3970"},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Hagit Shatkay","raw_affiliation_strings":["School of Computing, Queen's University, Kingston, ON, Canada","[School of Computing, Queen''s University, Kingston, Canada]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, Queen's University, Kingston, ON, Canada","institution_ids":["https://openalex.org/I204722609"]},{"raw_affiliation_string":"[School of Computing, Queen''s University, Kingston, Canada]","institution_ids":["https://openalex.org/I204722609"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5111895206"],"corresponding_institution_ids":["https://openalex.org/I4210109390"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":4.4572,"has_fulltext":true,"cited_by_count":170,"citation_normalized_percentile":{"value":0.95026067,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"7","issue":"1","first_page":"356","last_page":"356"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8303999900817871,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8303999900817871,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.023800000548362732,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.017100000753998756,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.79053795337677},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7783243656158447},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5946498513221741},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5901122689247131},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5749301910400391},{"id":"https://openalex.org/keywords/categorization","display_name":"Categorization","score":0.5636481642723083},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5558338761329651},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.4984004497528076},{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.488844096660614},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.4710999131202698},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42888081073760986},{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.4236617684364319},{"id":"https://openalex.org/keywords/text-corpus","display_name":"Text corpus","score":0.4154576063156128},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.39957594871520996}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.79053795337677},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7783243656158447},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5946498513221741},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5901122689247131},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5749301910400391},{"id":"https://openalex.org/C94124525","wikidata":"https://www.wikidata.org/wiki/Q912550","display_name":"Categorization","level":2,"score":0.5636481642723083},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5558338761329651},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.4984004497528076},{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.488844096660614},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.4710999131202698},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42888081073760986},{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.4236617684364319},{"id":"https://openalex.org/C2474386","wikidata":"https://www.wikidata.org/wiki/Q461183","display_name":"Text corpus","level":2,"score":0.4154576063156128},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.39957594871520996},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D017408","descriptor_name":"Guidelines as Topic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D017408","descriptor_name":"Guidelines as Topic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D017408","descriptor_name":"Guidelines as Topic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-7-356","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-356","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-356","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16867190","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16867190","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:969b3cf7fab045bc869d68b45ed9e259","is_oa":true,"landing_page_url":"https://doaj.org/article/969b3cf7fab045bc869d68b45ed9e259","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 7, Iss 1, p 356 (2006)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:351170","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC1559725","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1559725","is_oa":true,"landing_page_url":"http://doi.org/10.1186/1471-2105-7-356","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-7-356","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-356","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-356","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.5}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1480287196.pdf","grobid_xml":"https://content.openalex.org/works/W1480287196.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W108101778","https://openalex.org/W180959710","https://openalex.org/W273036708","https://openalex.org/W349354253","https://openalex.org/W1504212872","https://openalex.org/W1515842608","https://openalex.org/W1540822892","https://openalex.org/W1553529581","https://openalex.org/W1566012138","https://openalex.org/W1594134707","https://openalex.org/W1954715867","https://openalex.org/W1968848598","https://openalex.org/W1971352585","https://openalex.org/W1977968320","https://openalex.org/W1979960035","https://openalex.org/W1994306321","https://openalex.org/W1994610196","https://openalex.org/W2001829063","https://openalex.org/W2017238344","https://openalex.org/W2022204871","https://openalex.org/W2022616728","https://openalex.org/W2028473264","https://openalex.org/W2033553806","https://openalex.org/W2040717102","https://openalex.org/W2061327015","https://openalex.org/W2070567127","https://openalex.org/W2075118955","https://openalex.org/W2114524997","https://openalex.org/W2115007282","https://openalex.org/W2115159360","https://openalex.org/W2115590900","https://openalex.org/W2118806902","https://openalex.org/W2124617249","https://openalex.org/W2131826878","https://openalex.org/W2135063148","https://openalex.org/W2136140395","https://openalex.org/W2144001613","https://openalex.org/W2144378002","https://openalex.org/W2144949988","https://openalex.org/W2155744163","https://openalex.org/W2158040974","https://openalex.org/W2158505321","https://openalex.org/W2163107094","https://openalex.org/W2413372017","https://openalex.org/W3147292827","https://openalex.org/W4235728695"],"related_works":["https://openalex.org/W2122194007","https://openalex.org/W2052511096","https://openalex.org/W3185751515","https://openalex.org/W3004540147","https://openalex.org/W1479703980","https://openalex.org/W2130753992","https://openalex.org/W2404802443","https://openalex.org/W2749535755","https://openalex.org/W1553529581","https://openalex.org/W3203625491"],"abstract_inverted_index":{"BACKGROUND:":[0],"While":[1],"biomedical":[2,91,185,299],"text":[3,38,58,77,92,102,157,214,256,263,300],"mining":[4,75,264],"is":[5,84,244],"emerging":[6],"as":[7],"an":[8,22],"important":[9,23],"research":[10],"area,":[11,71],"practical":[12,74],"results":[13,50,220],"have":[14,60,108,112,153,307],"proven":[15],"difficult":[16],"to":[17,34,63,85,98,136,160,260,282],"achieve.":[18],"We":[19,46,111,144,208,275],"believe":[20,119],"that":[21,39,59,106,117,179,196,291,305],"first":[24],"step":[25],"towards":[26],"more":[27],"accurate":[28],"text-mining":[29],"lies":[30],"in":[31,311],"the":[32,49,65,150,164,167,173,227,230,250,253,288,295,302],"ability":[33],"identify":[35],"and":[36,93,127,142,148,204,270,285],"characterize":[37,120],"satisfies":[40],"various":[41],"types":[42],"of":[43,51,56,67,76,90,124,166,176,188,229,234,239,255,273,298],"information":[44],"needs.":[45],"report":[47],"here":[48],"our":[52,197,210],"inquiry":[53],"into":[54],"properties":[55],"scientific":[57,125],"sufficient":[61],"generality":[62],"transcend":[64],"confines":[66],"a":[68,87,121,133,201,213,235],"narrow":[69],"subject":[70],"while":[72],"supporting":[73,132],"for":[78,131,155,252,265,294],"factual":[79],"information.":[80,274],"Our":[81],"ultimate":[82],"goal":[83],"annotate":[86],"significant":[88],"corpus":[89,238],"train":[94],"machine":[95,279],"learning":[96,280],"methods":[97],"automatically":[99],"categorize":[100],"such":[101],"along":[103,217,241,257,301,314],"certain":[104],"dimensions":[105,116,147,304],"we":[107,118,152,306],"defined.":[109],"RESULTS:":[110],"identified":[113],"five":[114],"qualitative":[115],"broad":[122],"range":[123],"sentences,":[126],"are":[128,276,318],"therefore":[129],"useful":[130],"general":[134,303],"approach":[135],"text-mining:":[137],"focus,":[138],"polarity,":[139],"certainty,":[140],"evidence,":[141],"directionality.":[143],"define":[145],"these":[146,189,242],"describe":[149],"guidelines":[151,198,211,243,310],"developed":[154],"annotating":[156],"with":[158,218,315],"regard":[159],"them.":[161],"To":[162],"examine":[163],"effectiveness":[165],"guidelines,":[168],"twelve":[169],"annotators":[170],"independently":[171,223],"annotated":[172,289,316],"same":[174],"set":[175],"101":[177],"sentences":[178],"were":[180],"randomly":[181],"selected":[182],"from":[183,221],"current":[184],"periodicals.":[186],"Analysis":[187],"annotations":[190,248],"shows":[191],"70-80%":[192],"inter-annotator":[193],"agreement,":[194],"suggesting":[195],"indeed":[199],"present":[200,209],"well-defined,":[202],"executable":[203],"reproducible":[205],"task.":[206,231],"CONCLUSION:":[207],"defining":[212],"annotation":[215,219,233],"task,":[216],"multiple":[222,258],"produced":[224],"annotations,":[225],"demonstrating":[226],"feasibility":[228],"The":[232,309],"very":[236],"large":[237],"documents":[240],"currently":[245,277],"ongoing.":[246],"These":[247],"form":[249],"basis":[251],"categorization":[254,297],"dimensions,":[259],"support":[261],"viable":[262],"experimental":[266],"results,":[267],"methodology":[268],"statements,":[269],"other":[271],"forms":[272],"developing":[278],"methods,":[281],"be":[283],"trained":[284],"tested":[286],"on":[287],"corpus,":[290],"would":[292],"allow":[293],"automatic":[296],"presented.":[308],"full":[312],"detail,":[313],"examples,":[317],"publicly":[319],"available.":[320]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":11},{"year":2013,"cited_by_count":14},{"year":2012,"cited_by_count":19}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
