{"id":"https://openalex.org/W1887198461","doi":"https://doi.org/10.1186/1471-2105-7-347","title":"BBP: Brucella genome annotation with literature mining and curation","display_name":"BBP: Brucella genome annotation with literature mining and curation","publication_year":2006,"publication_date":"2006-07-16","ids":{"openalex":"https://openalex.org/W1887198461","doi":"https://doi.org/10.1186/1471-2105-7-347","mag":"1887198461","pmid":"https://pubmed.ncbi.nlm.nih.gov/16842628"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-7-347","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-347","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-347","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-347","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112481250","display_name":"Zuoshuang Xiang","orcid":null},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zuoshuang Xiang","raw_affiliation_strings":["Unit for Laboratory Animal Medicine, University of Michigan Medical School, Ann Arbor, MI 48109, USA. zxiang@umich.edu","Unit for Laboratory Animal Medicine, University of Michigan Medical School, Ann Arbor, MI, 48109, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unit for Laboratory Animal Medicine, University of Michigan Medical School, Ann Arbor, MI 48109, USA. zxiang@umich.edu","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Unit for Laboratory Animal Medicine, University of Michigan Medical School, Ann Arbor, MI, 48109, USA","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100528299","display_name":"Wenjie Zheng","orcid":"https://orcid.org/0000-0002-1515-5289"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wenjie Zheng","raw_affiliation_strings":["Webmail.us Inc., Blacksburg, VA, 24060, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Webmail.us Inc., Blacksburg, VA, 24060, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024742201","display_name":"Yongqun He","orcid":"https://orcid.org/0000-0001-9189-9661"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yongqun He","raw_affiliation_strings":["Bioinformatics Program, University of Michigan Medical School, Ann Arbor, MI, 48109, USA","Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA","Unit for Laboratory Animal Medicine, University of Michigan Medical School, Ann Arbor, MI, 48109, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Program, University of Michigan Medical School, Ann Arbor, MI, 48109, USA","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Unit for Laboratory Animal Medicine, University of Michigan Medical School, Ann Arbor, MI, 48109, USA","institution_ids":["https://openalex.org/I27837315"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5024742201"],"corresponding_institution_ids":["https://openalex.org/I27837315"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":3.0662,"has_fulltext":true,"cited_by_count":54,"citation_normalized_percentile":{"value":0.89174609,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"7","issue":"1","first_page":"347","last_page":"347"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11899","display_name":"Brucella: diagnosis, epidemiology, treatment","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/3404","display_name":"Small Animals"},"field":{"id":"https://openalex.org/fields/34","display_name":"Veterinary"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11899","display_name":"Brucella: diagnosis, epidemiology, treatment","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/3404","display_name":"Small Animals"},"field":{"id":"https://openalex.org/fields/34","display_name":"Veterinary"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12951","display_name":"Burkholderia infections and melioidosis","score":0.0017000000225380063,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.0005000000237487257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/brucella","display_name":"Brucella","score":0.7621644735336304},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6592594981193542},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.5724074244499207},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5443872213363647},{"id":"https://openalex.org/keywords/brucella-melitensis","display_name":"Brucella melitensis","score":0.514674961566925},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.46469801664352417},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.45822274684906006},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.436920702457428},{"id":"https://openalex.org/keywords/genome-project","display_name":"Genome project","score":0.43073561787605286},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3779282569885254},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.3745831251144409},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.33096200227737427},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2552419900894165},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17590564489364624},{"id":"https://openalex.org/keywords/brucellosis","display_name":"Brucellosis","score":0.09519776701927185}],"concepts":[{"id":"https://openalex.org/C2780767784","wikidata":"https://www.wikidata.org/wiki/Q313358","display_name":"Brucella","level":3,"score":0.7621644735336304},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6592594981193542},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.5724074244499207},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5443872213363647},{"id":"https://openalex.org/C2777692091","wikidata":"https://www.wikidata.org/wiki/Q3512031","display_name":"Brucella melitensis","level":4,"score":0.514674961566925},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.46469801664352417},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.45822274684906006},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.436920702457428},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.43073561787605286},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3779282569885254},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.3745831251144409},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.33096200227737427},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2552419900894165},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17590564489364624},{"id":"https://openalex.org/C2781429187","wikidata":"https://www.wikidata.org/wiki/Q156050","display_name":"Brucellosis","level":2,"score":0.09519776701927185},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002002","descriptor_name":"Brucella","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002002","descriptor_name":"Brucella","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002002","descriptor_name":"Brucella","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002002","descriptor_name":"Brucella","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002002","descriptor_name":"Brucella","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D002002","descriptor_name":"Brucella","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D002002","descriptor_name":"Brucella","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D002002","descriptor_name":"Brucella","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014774","descriptor_name":"Virulence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014774","descriptor_name":"Virulence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014774","descriptor_name":"Virulence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014774","descriptor_name":"Virulence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-7-347","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-347","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-347","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16842628","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16842628","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:bdce2aff9daa448a997643536e2abc75","is_oa":false,"landing_page_url":"https://doaj.org/article/bdce2aff9daa448a997643536e2abc75","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 7, Iss 1, p 347 (2006)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1539029","is_oa":true,"landing_page_url":"http://doi.org/10.1186/1471-2105-7-347","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:deepblue.lib.umich.edu:2027.42/112359","is_oa":true,"landing_page_url":"https://hdl.handle.net/2027.42/112359","pdf_url":"https://hdl.handle.net/2027.42/112359","source":{"id":"https://openalex.org/S4306400393","display_name":"Deep Blue (University of Michigan)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I27837315","host_organization_name":"University of Michigan","host_organization_lineage":["https://openalex.org/I27837315"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-7-347","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-347","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-347","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.6700000166893005,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G5562136253","display_name":null,"funder_award_id":"NIAID R21","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7090264260","display_name":null,"funder_award_id":"1R21AI057875-01","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G7548063998","display_name":null,"funder_award_id":"R21 AI057875","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"}],"funders":[{"id":"https://openalex.org/F4320309398","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055"},{"id":"https://openalex.org/F4320309646","display_name":"Virginia Polytechnic Institute and State University","ror":"https://ror.org/02smfhw86"},{"id":"https://openalex.org/F4320309652","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332682","display_name":"Medical School, University of Michigan","ror":"https://ror.org/00jmfr291"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1887198461.pdf","grobid_xml":"https://content.openalex.org/works/W1887198461.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W77717277","https://openalex.org/W1601058961","https://openalex.org/W1812626466","https://openalex.org/W1903844680","https://openalex.org/W1976097579","https://openalex.org/W1984345785","https://openalex.org/W1987146951","https://openalex.org/W2014492282","https://openalex.org/W2032772890","https://openalex.org/W2035094893","https://openalex.org/W2053673723","https://openalex.org/W2053925448","https://openalex.org/W2065397439","https://openalex.org/W2090834116","https://openalex.org/W2092779428","https://openalex.org/W2096525273","https://openalex.org/W2100008559","https://openalex.org/W2100472522","https://openalex.org/W2107975078","https://openalex.org/W2111771767","https://openalex.org/W2118806902","https://openalex.org/W2123280311","https://openalex.org/W2126469373","https://openalex.org/W2130687290","https://openalex.org/W2133790733","https://openalex.org/W2139057710","https://openalex.org/W2143286186","https://openalex.org/W2145477956","https://openalex.org/W2147281068","https://openalex.org/W2148650107","https://openalex.org/W2148853951","https://openalex.org/W2149731513","https://openalex.org/W2152497088","https://openalex.org/W2153294599","https://openalex.org/W2159482845","https://openalex.org/W2162122989","https://openalex.org/W2164779455","https://openalex.org/W2166057395","https://openalex.org/W4245803912","https://openalex.org/W4248664566"],"related_works":["https://openalex.org/W4232837674","https://openalex.org/W1597776336","https://openalex.org/W4311815940","https://openalex.org/W2372950123","https://openalex.org/W3034139913","https://openalex.org/W3111061871","https://openalex.org/W2979252419","https://openalex.org/W2099626126","https://openalex.org/W1999129612","https://openalex.org/W4309908782"],"abstract_inverted_index":{"BACKGROUND:":[0],"Brucella":[1,18,25,44,46,99,107,112,121,137,151,164,197,241,252,265,281,291,304,311,320,335],"species":[2],"are":[3,169,257,268,326],"Gram-negative,":[4],"facultative":[5],"intracellular":[6],"bacteria":[7],"that":[8,97],"cause":[9],"brucellosis":[10],"in":[11,49,63,167],"humans":[12],"and":[13,23,27,30,77,124,130,136,144,153,161,171,188,209,227,238,295,309,318,323],"animals.":[14],"Sequences":[15],"of":[16,73,87,105,147,203,280,334],"four":[17],"genomes":[19,152],"have":[20],"been":[21],"published,":[22],"various":[24],"gene":[26,100,242,321],"genome":[28,47,91,122,312],"data":[29,48,89,123,313],"analysis":[31,57,125,162],"resources":[32,40],"exist.":[33],"A":[34],"web":[35],"gateway":[36,302],"to":[37,70,81,118,142,155,216,235,248,306,331],"integrate":[38,119,217],"these":[39],"will":[41],"greatly":[42],"facilitate":[43],"research.":[45],"current":[50],"databases":[51,160,317],"is":[52,67,94,116,214,233,300],"largely":[53],"derived":[54],"from":[55,270,315],"computational":[56,218],"without":[58],"experimental":[59],"validation":[60],"typically":[61],"found":[62],"peer-reviewed":[64],"publications.":[65,272],"It":[66,93],"partially":[68],"due":[69],"the":[71,84,200],"lack":[72],"a":[74,176,182,185,206,223,301],"literature":[75,88,128,165,191,204,207,219,271],"mining":[76,129,208,220],"curation":[78,210,226],"system":[79,211,232],"able":[80],"efficiently":[82,195],"incorporate":[83],"large":[85,201],"amount":[86,202],"into":[90],"annotation.":[92],"further":[95,258],"hypothesized":[96],"literature-based":[98],"annotation":[101],"would":[102],"increase":[103],"understanding":[104,333],"complicated":[106],"pathogenesis":[108],"mechanisms.":[109],"RESULTS:":[110],"The":[111,132,230,254],"Bioinformatics":[113],"Portal":[114],"(BBP)":[115],"developed":[117,215],"existing":[120,159],"tools":[126],"with":[127,222],"curation.":[131],"BBP":[133,284,299],"InterBru":[134],"database":[135],"Genome":[138],"Browser":[139],"allow":[140],"users":[141],"search":[143],"analyze":[145],"genes":[146,198,246,256],"4":[148],"currently":[149],"available":[150],"link":[154],"more":[156,277],"than":[157],"20":[158],"programs.":[163],"publications":[166],"PubMed":[168],"extracted":[170,269],"can":[172],"be":[173,249],"searched":[174],"by":[175],"TextPresso-powered":[177],"natural":[178],"language":[179],"processing":[180],"method,":[181],"MeSH":[183],"browser,":[184],"keywords":[186],"search,":[187,307],"an":[189],"automatic":[190],"update":[192],"service.":[193],"To":[194],"annotate":[196],"using":[199,260,328],"publications,":[205],"coined":[212],"Limix":[213,231,329],"methods":[221],"PubSearch-powered":[224],"manual":[225],"management":[228],"system.":[229],"used":[234],"quickly":[236],"find":[237],"confirm":[239],"107":[240],"mutations":[243,322],"including":[244],"75":[245,255],"shown":[247],"essential":[250],"for":[251,303],"virulence.":[253],"clustered":[259],"COG.":[261],"In":[262],"addition,":[263],"62":[264],"genetic":[266,324],"interactions":[267,325],"These":[273],"results":[274],"make":[275],"possible":[276],"comprehensive":[278],"investigation":[279],"pathogenesis.":[282,336],"Other":[283],"features":[285],"include":[286],"publication":[287],"email":[288],"alert":[289],"service,":[290],"researchers'":[292],"contact":[293],"database,":[294],"discussion":[296],"forum.":[297],"CONCLUSION:":[298],"researchers":[305],"analyze,":[308],"curate":[310],"originated":[314],"public":[316],"literature.":[319],"annotated":[327],"leading":[330],"better":[332]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":5}],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
