{"id":"https://openalex.org/W1574945381","doi":"https://doi.org/10.1186/1471-2105-7-318","title":"MACSIMS : multiple alignment of complete sequences information management system","display_name":"MACSIMS : multiple alignment of complete sequences information management system","publication_year":2006,"publication_date":"2006-06-23","ids":{"openalex":"https://openalex.org/W1574945381","doi":"https://doi.org/10.1186/1471-2105-7-318","mag":"1574945381","pmid":"https://pubmed.ncbi.nlm.nih.gov/16792820"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-7-318","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-318","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-318","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-318","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039921905","display_name":"Julie Thompson","orcid":"https://orcid.org/0000-0003-4893-3478"},"institutions":[{"id":"https://openalex.org/I4210086872","display_name":"Institut de g\u00e9n\u00e9tique et de biologie mol\u00e9culaire et cellulaire","ror":"https://ror.org/0015ws592","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I4210086872","https://openalex.org/I4210096427","https://openalex.org/I68947357"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Julie D Thompson","raw_affiliation_strings":["Laboratoire de Biologie et Genomique Structurales, Institut de G\u00e9n\u00e9tique et de Biologie Mol\u00e9culaire et Cellulaire, Illkirch, France. julie@igbmc.u-strasbg.fr","Laboratoire de Biologie et Genomique Structurales, Institut de G\u00e9n\u00e9tique et de Biologie Mol\u00e9culaire et Cellulaire, Illkirch, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Biologie et Genomique Structurales, Institut de G\u00e9n\u00e9tique et de Biologie Mol\u00e9culaire et Cellulaire, Illkirch, France. julie@igbmc.u-strasbg.fr","institution_ids":["https://openalex.org/I4210086872"]},{"raw_affiliation_string":"Laboratoire de Biologie et Genomique Structurales, Institut de G\u00e9n\u00e9tique et de Biologie Mol\u00e9culaire et Cellulaire, Illkirch, France","institution_ids":["https://openalex.org/I4210086872"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060104472","display_name":"Arnaud Muller","orcid":"https://orcid.org/0000-0002-3841-4722"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Arnaud Muller","raw_affiliation_strings":["The Laboratory of Molecular Biology, Genetic Analysis & Modelling, Luxembourg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Laboratory of Molecular Biology, Genetic Analysis & Modelling, Luxembourg, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039618816","display_name":"Andrew Waterhouse","orcid":"https://orcid.org/0009-0004-5717-6063"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]},{"id":"https://openalex.org/I4210151791","display_name":"Genomics (United Kingdom)","ror":"https://ror.org/053a6xa29","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210151791"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew Waterhouse","raw_affiliation_strings":["Post Genomics & Molecular Interactions Centre, School of Life Sciences, University of Dundee, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Post Genomics & Molecular Interactions Centre, School of Life Sciences, University of Dundee, UK","institution_ids":["https://openalex.org/I177639307","https://openalex.org/I4210151791"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jim Procter","orcid":null},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]},{"id":"https://openalex.org/I4210151791","display_name":"Genomics (United Kingdom)","ror":"https://ror.org/053a6xa29","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210151791"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jim Procter","raw_affiliation_strings":["Post Genomics & Molecular Interactions Centre, School of Life Sciences, University of Dundee, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Post Genomics & Molecular Interactions Centre, School of Life Sciences, University of Dundee, UK","institution_ids":["https://openalex.org/I177639307","https://openalex.org/I4210151791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082043302","display_name":"Geoffrey J. Barton","orcid":"https://orcid.org/0000-0002-9014-5355"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]},{"id":"https://openalex.org/I4210151791","display_name":"Genomics (United Kingdom)","ror":"https://ror.org/053a6xa29","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210151791"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Geoffrey J Barton","raw_affiliation_strings":["Post Genomics & Molecular Interactions Centre, School of Life Sciences, University of Dundee, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Post Genomics & Molecular Interactions Centre, School of Life Sciences, University of Dundee, UK","institution_ids":["https://openalex.org/I177639307","https://openalex.org/I4210151791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054655496","display_name":"Fr\u00e9d\u00e9ric Plewniak","orcid":"https://orcid.org/0000-0001-6534-8786"},"institutions":[{"id":"https://openalex.org/I4210086872","display_name":"Institut de g\u00e9n\u00e9tique et de biologie mol\u00e9culaire et cellulaire","ror":"https://ror.org/0015ws592","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I4210086872","https://openalex.org/I4210096427","https://openalex.org/I68947357"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fr\u00e9d\u00e9ric Plewniak","raw_affiliation_strings":["Laboratoire de Biologie et Genomique Structurales, Institut de G\u00e9n\u00e9tique et de Biologie Mol\u00e9culaire et Cellulaire, Illkirch, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Biologie et Genomique Structurales, Institut de G\u00e9n\u00e9tique et de Biologie Mol\u00e9culaire et Cellulaire, Illkirch, France","institution_ids":["https://openalex.org/I4210086872"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025255544","display_name":"Olivier Poch","orcid":"https://orcid.org/0000-0002-7134-3217"},"institutions":[{"id":"https://openalex.org/I4210086872","display_name":"Institut de g\u00e9n\u00e9tique et de biologie mol\u00e9culaire et cellulaire","ror":"https://ror.org/0015ws592","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I4210086872","https://openalex.org/I4210096427","https://openalex.org/I68947357"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Olivier Poch","raw_affiliation_strings":["Laboratoire de Biologie et Genomique Structurales, Institut de G\u00e9n\u00e9tique et de Biologie Mol\u00e9culaire et Cellulaire, Illkirch, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Biologie et Genomique Structurales, Institut de G\u00e9n\u00e9tique et de Biologie Mol\u00e9culaire et Cellulaire, Illkirch, France","institution_ids":["https://openalex.org/I4210086872"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5039921905"],"corresponding_institution_ids":["https://openalex.org/I4210086872"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.1182,"has_fulltext":true,"cited_by_count":47,"citation_normalized_percentile":{"value":0.91247283,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"7","issue":"1","first_page":"318","last_page":"318"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.4002000093460083,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.4002000093460083,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.24130000174045563,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.10939999669790268,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6801375150680542},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.579862117767334},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.49680498242378235},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.48603731393814087},{"id":"https://openalex.org/keywords/alignment-free-sequence-analysis","display_name":"Alignment-free sequence analysis","score":0.4666436016559601},{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.45461735129356384},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4323182702064514},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4245093762874603},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.41665828227996826},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.41116905212402344},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38077133893966675},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3676067590713501},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3413729667663574},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21959397196769714},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20932361483573914},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.20181015133857727},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17136093974113464},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.10032227635383606}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6801375150680542},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.579862117767334},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.49680498242378235},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.48603731393814087},{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.4666436016559601},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.45461735129356384},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4323182702064514},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4245093762874603},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.41665828227996826},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.41116905212402344},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38077133893966675},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3676067590713501},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3413729667663574},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21959397196769714},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20932361483573914},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.20181015133857727},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17136093974113464},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.10032227635383606},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008331","descriptor_name":"Management Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008331","descriptor_name":"Management Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008331","descriptor_name":"Management Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008331","descriptor_name":"Management Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/1471-2105-7-318","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-318","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-318","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16792820","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16792820","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:discovery.dundee.ac.uk:openaire/171b59b2-f637-4c1a-b05e-d91853511598","is_oa":true,"landing_page_url":"https://discovery.dundee.ac.uk/en/publications/171b59b2-f637-4c1a-b05e-d91853511598","pdf_url":null,"source":{"id":"https://openalex.org/S4306400523","display_name":"Discovery Research Portal (University of Dundee)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177639307","host_organization_name":"University of Dundee","host_organization_lineage":["https://openalex.org/I177639307"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Thompson, J D, Muller, A, Waterhouse, A, Procter, J, Barton, G J, Plewniak, F & Poch, O 2006, 'MACSIMS : multiple alignment of complete sequences information management system', BMC Bioinformatics, vol. 7, pp. 318. https://doi.org/10.1186/1471-2105-7-318","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:HAL:hal-00188166v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00188166","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2006, 7, pp.318. &#x27E8;10.1186/1471-2105-7-318&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:21bae8e8ad284dffadd729dcd71b2cc8","is_oa":false,"landing_page_url":"https://doaj.org/article/21bae8e8ad284dffadd729dcd71b2cc8","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 7, Iss 1, p 318 (2006)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:338471","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1539025","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1539025","is_oa":true,"landing_page_url":"http://doi.org/10.1186/1471-2105-7-318","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-7-318","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-318","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-318","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4000000059604645,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320893","display_name":"Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale","ror":"https://ror.org/02vjkv261"},{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1574945381.pdf","grobid_xml":"https://content.openalex.org/works/W1574945381.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W1509280691","https://openalex.org/W1702681437","https://openalex.org/W1730348256","https://openalex.org/W1813224457","https://openalex.org/W1964056758","https://openalex.org/W1972895670","https://openalex.org/W1976747271","https://openalex.org/W1980824899","https://openalex.org/W1982481323","https://openalex.org/W1987328021","https://openalex.org/W1988978909","https://openalex.org/W1994306321","https://openalex.org/W2010638919","https://openalex.org/W2018300877","https://openalex.org/W2024645073","https://openalex.org/W2030750720","https://openalex.org/W2041084399","https://openalex.org/W2042346975","https://openalex.org/W2047544230","https://openalex.org/W2060593022","https://openalex.org/W2068886104","https://openalex.org/W2089357374","https://openalex.org/W2096946545","https://openalex.org/W2097263991","https://openalex.org/W2104244040","https://openalex.org/W2105006906","https://openalex.org/W2106108593","https://openalex.org/W2113178788","https://openalex.org/W2117223578","https://openalex.org/W2118321916","https://openalex.org/W2119195082","https://openalex.org/W2121651202","https://openalex.org/W2127774996","https://openalex.org/W2130479394","https://openalex.org/W2132926880","https://openalex.org/W2136522597","https://openalex.org/W2136570298","https://openalex.org/W2140872496","https://openalex.org/W2141022852","https://openalex.org/W2141885858","https://openalex.org/W2143784594","https://openalex.org/W2144112248","https://openalex.org/W2146389940","https://openalex.org/W2148047088","https://openalex.org/W2150956643","https://openalex.org/W2157046483","https://openalex.org/W2158714788","https://openalex.org/W2161732286","https://openalex.org/W2170309361","https://openalex.org/W2170973554","https://openalex.org/W4210400672","https://openalex.org/W4210546651","https://openalex.org/W4235589297"],"related_works":["https://openalex.org/W2051969447","https://openalex.org/W2141411672","https://openalex.org/W2133116680","https://openalex.org/W2111937814","https://openalex.org/W2029514038","https://openalex.org/W1486249959","https://openalex.org/W2141530749","https://openalex.org/W1977143711","https://openalex.org/W2091678889","https://openalex.org/W2730968108"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1,105,130],"the":[2,37,43,60,66,69,83,102,106,114,134,137,193,197,209,217,239,256,259,264,270],"post-genomic":[3],"era,":[4],"systems-level":[5],"studies":[6],"are":[7,33,111,152,169,273],"being":[8],"performed":[9],"that":[10,81,168,231,251],"seek":[11],"to":[12,123,143,158,171,192,263],"explain":[13],"complex":[14],"biological":[15],"systems":[16,32],"by":[17,189],"integrating":[18],"diverse":[19],"resources":[20],"from":[21,101,121],"fields":[22],"such":[23],"as":[24],"genomics,":[25],"proteomics":[26],"or":[27],"transcriptomics.":[28],"New":[29],"information":[30,64,78,97,228,262],"management":[31,79,229],"now":[34],"needed":[35],"for":[36,59],"collection,":[38],"validation":[39],"and":[40,88,95,113,119,242,255,269],"analysis":[41,92],"of":[42,46,52,62,68,85,136,165,180,208,235,258],"vast":[44],"amount":[45],"heterogeneous":[47],"data":[48,116],"available.":[49],"Multiple":[50],"alignments":[51],"complete":[53],"sequences":[54,125],"provide":[55],"an":[56],"ideal":[57],"environment":[58,250],"integration":[61],"this":[63],"in":[65,161,174,196],"context":[67],"protein":[70,236],"family.":[71],"RESULTS:":[72],"MACSIMS":[73,154,224,245],"is":[74,98,117,141,155,225],"a":[75,131,162,213,226,248],"multiple":[76,107],"alignment-based":[77],"program":[80,219],"combines":[82],"advantages":[84],"both":[86],"knowledge-based":[87],"ab":[89],"initio":[90],"sequence":[91,139,181],"methods.":[93],"Structural":[94],"functional":[96,241],"retrieved":[99,115],"automatically":[100],"public":[103,198],"databases.":[104,199],"alignment,":[108],"homologous":[109],"regions":[110],"identified":[112],"evaluated":[118],"propagated":[120,138],"known":[122,170],"unknown":[124],"with":[126,184],"these":[127,185],"reliable":[128],"regions.":[129],"large-scale":[132],"evaluation,":[133],"specificity":[135],"features":[140,182,194],"estimated":[142],"be":[144,172],">99%,":[145],"i.e.":[146],"very":[147],"few":[148],"false":[149],"positive":[150],"predictions":[151],"made.":[153],"then":[156],"used":[157],"characterise":[159],"mutations":[160],"test":[163],"set":[164],"100":[166],"proteins":[167,186],"involved":[173],"human":[175],"genetic":[176],"diseases.":[177],"The":[178],"number":[179],"associated":[183],"was":[187],"increased":[188],"60%,":[190],"compared":[191],"available":[195,274],"An":[200],"XML":[201],"format":[202],"output":[203],"file":[204],"allows":[205,220],"automatic":[206],"parsing":[207],"MACSIM":[210],"results,":[211],"while":[212],"graphical":[214],"display":[215],"using":[216],"JalView":[218],"manual":[221],"analysis.":[222],"CONCLUSION:":[223],"new":[227],"system":[230],"incorporates":[232],"detailed":[233],"analyses":[234],"families":[237],"at":[238,275],"structural,":[240],"evolutionary":[243],"levels.":[244],"thus":[246],"provides":[247],"unique":[249],"facilitates":[252],"knowledge":[253],"extraction":[254],"presentation":[257],"most":[260],"pertinent":[261],"biologist.":[265],"A":[266],"web":[267],"server":[268],"source":[271],"code":[272],"http://bips.u-strasbg.fr/MACSIMS/.":[276]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":5}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
