{"id":"https://openalex.org/W1948418367","doi":"https://doi.org/10.1186/1471-2105-7-281","title":"MeMo: a hybrid SQL/XML approach to metabolomic data management for functional genomics","display_name":"MeMo: a hybrid SQL/XML approach to metabolomic data management for functional genomics","publication_year":2006,"publication_date":"2006-06-05","ids":{"openalex":"https://openalex.org/W1948418367","doi":"https://doi.org/10.1186/1471-2105-7-281","mag":"1948418367","pmid":"https://pubmed.ncbi.nlm.nih.gov/16753052"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-7-281","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-281","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-281","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-281","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016345745","display_name":"\u202aIrena Spasi\u0107","orcid":"https://orcid.org/0000-0002-8132-3885"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Irena Spasi\u0107","raw_affiliation_strings":["School of Chemistry, Faraday Building, The University of Manchester, Manchester, M60 1QD, UK. i.spasic@manchester.ac.uk","School of Chemistry, Faraday Building, The University of Manchester, Manchester, M60 1QD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Chemistry, Faraday Building, The University of Manchester, Manchester, M60 1QD, UK. i.spasic@manchester.ac.uk","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"School of Chemistry, Faraday Building, The University of Manchester, Manchester, M60 1QD, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091024912","display_name":"Warwick B. Dunn","orcid":"https://orcid.org/0000-0001-6924-0027"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Warwick B Dunn","raw_affiliation_strings":["School of Chemistry, Faraday Building, The University of Manchester, Manchester, M60 1QD, UK","School of Chemistry, Faraday Building, The University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Chemistry, Faraday Building, The University of Manchester, Manchester, M60 1QD, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"School of Chemistry, Faraday Building, The University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083858339","display_name":"Giles Velarde","orcid":null},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Giles Velarde","raw_affiliation_strings":["School of Chemistry, Faraday Building, The University of Manchester, Manchester, M60 1QD, UK","School of Chemistry, Faraday Building, The University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Chemistry, Faraday Building, The University of Manchester, Manchester, M60 1QD, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"School of Chemistry, Faraday Building, The University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063491016","display_name":"Andy Tseng","orcid":null},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andy Tseng","raw_affiliation_strings":["School of Chemistry, Faraday Building, The University of Manchester, Manchester, M60 1QD, UK","School of Chemistry, Faraday Building, The University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Chemistry, Faraday Building, The University of Manchester, Manchester, M60 1QD, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"School of Chemistry, Faraday Building, The University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109829085","display_name":"Helen Jenkins","orcid":null},"institutions":[{"id":"https://openalex.org/I97429440","display_name":"University of Wales","ror":"https://ror.org/01se4f844","country_code":"GB","type":"education","lineage":["https://openalex.org/I97429440"]},{"id":"https://openalex.org/I16038530","display_name":"Aberystwyth University","ror":"https://ror.org/015m2p889","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Helen Jenkins","raw_affiliation_strings":["Department of Computer Science, The University of Wales, Aberystwyth, SY23 3DB, UK","Dept. of Computer Science, The University of Wales, Aberystwyth, UK#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, The University of Wales, Aberystwyth, SY23 3DB, UK","institution_ids":["https://openalex.org/I16038530","https://openalex.org/I97429440"]},{"raw_affiliation_string":"Dept. of Computer Science, The University of Wales, Aberystwyth, UK#TAB#","institution_ids":["https://openalex.org/I16038530"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079734062","display_name":"Nigel Hardy","orcid":"https://orcid.org/0000-0002-9607-2601"},"institutions":[{"id":"https://openalex.org/I16038530","display_name":"Aberystwyth University","ror":"https://ror.org/015m2p889","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530"]},{"id":"https://openalex.org/I97429440","display_name":"University of Wales","ror":"https://ror.org/01se4f844","country_code":"GB","type":"education","lineage":["https://openalex.org/I97429440"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nigel Hardy","raw_affiliation_strings":["Department of Computer Science, The University of Wales, Aberystwyth, SY23 3DB, UK","Dept. of Computer Science, The University of Wales, Aberystwyth, UK#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, The University of Wales, Aberystwyth, SY23 3DB, UK","institution_ids":["https://openalex.org/I16038530","https://openalex.org/I97429440"]},{"raw_affiliation_string":"Dept. of Computer Science, The University of Wales, Aberystwyth, UK#TAB#","institution_ids":["https://openalex.org/I16038530"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075883279","display_name":"Stephen G. Oliver","orcid":"https://orcid.org/0000-0003-3410-6439"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stephen G Oliver","raw_affiliation_strings":["Faculty of Life Sciences, Michael Smith Building, The University of Manchester, Manchester, M13 9PT, UK","Faculty of Life Sciences, Michael Smith Building, The University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Life Sciences, Michael Smith Building, The University of Manchester, Manchester, M13 9PT, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Faculty of Life Sciences, Michael Smith Building, The University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077370611","display_name":"Douglas B. Kell","orcid":"https://orcid.org/0000-0001-5838-7963"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Douglas B Kell","raw_affiliation_strings":["School of Chemistry, Faraday Building, The University of Manchester, Manchester, M60 1QD, UK","School of Chemistry, Faraday Building, The University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Chemistry, Faraday Building, The University of Manchester, Manchester, M60 1QD, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"School of Chemistry, Faraday Building, The University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5016345745"],"corresponding_institution_ids":["https://openalex.org/I28407311"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.2717,"has_fulltext":true,"cited_by_count":45,"citation_normalized_percentile":{"value":0.91843365,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"7","issue":"1","first_page":"281","last_page":"281"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.8992999792098999,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.8992999792098999,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.0203000009059906,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.014999999664723873,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7723752856254578},{"id":"https://openalex.org/keywords/relational-database","display_name":"Relational database","score":0.5539195537567139},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5530404448509216},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.5435580611228943},{"id":"https://openalex.org/keywords/sql","display_name":"SQL","score":0.49696019291877747},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4733966588973999},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.4388960599899292},{"id":"https://openalex.org/keywords/relational-database-management-system","display_name":"Relational database management system","score":0.43468204140663147},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.4185337424278259},{"id":"https://openalex.org/keywords/xml-database","display_name":"XML database","score":0.41187185049057007},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3880465030670166},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.37594789266586304},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.25347262620925903},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1536949872970581}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7723752856254578},{"id":"https://openalex.org/C5655090","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database","level":2,"score":0.5539195537567139},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5530404448509216},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.5435580611228943},{"id":"https://openalex.org/C510870499","wikidata":"https://www.wikidata.org/wiki/Q47607","display_name":"SQL","level":2,"score":0.49696019291877747},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4733966588973999},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.4388960599899292},{"id":"https://openalex.org/C24394798","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database management system","level":3,"score":0.43468204140663147},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.4185337424278259},{"id":"https://openalex.org/C183068750","wikidata":"https://www.wikidata.org/wiki/Q357393","display_name":"XML database","level":3,"score":0.41187185049057007},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3880465030670166},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.37594789266586304},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.25347262620925903},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1536949872970581}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008660","descriptor_name":"Metabolism","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D008660","descriptor_name":"Metabolism","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D008660","descriptor_name":"Metabolism","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D008660","descriptor_name":"Metabolism","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1186/1471-2105-7-281","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-281","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-281","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16753052","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16753052","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:https://orca.cardiff.ac.uk:6215","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S7407055383","display_name":"ORCA Online Research @Cardiff","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:aber.ac.uk:publications/c8e62267-8639-4a8c-9fc4-dcae12cf925c","is_oa":false,"landing_page_url":"https://pure.aber.ac.uk/portal/en/publications/memo-a-hybrid-sqlxml-approach-to-metabolomic-data-management-for-functional-genomics(c8e62267-8639-4a8c-9fc4-dcae12cf925c).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306401660","display_name":"Aberystwyth Research portal (Aberystwyth University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I16038530","host_organization_name":"Aberystwyth University","host_organization_lineage":["https://openalex.org/I16038530"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:doaj.org/article:85f87afc391b469fb8a4ce60b6f8ea03","is_oa":true,"landing_page_url":"https://doaj.org/article/85f87afc391b469fb8a4ce60b6f8ea03","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 7, Iss 1, p 281 (2006)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:303530","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC1522028","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1522028","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1522028","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/bf65b674-3a2a-4c45-a5aa-894e28ed8c96","is_oa":true,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/bf65b674-3a2a-4c45-a5aa-894e28ed8c96","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Spasi\u0107, I, Dunn, W B, Velarde, G, Tseng, A, Jenkins, H, Hardy, N, Oliver, S G & Kell, D B 2006, 'MeMo : a hybrid SQL/XML approach to metabolomic data management for functional genomics', BMC Bioinformatics, vol. 7, 281. https://doi.org/10.1186/1471-2105-7-281","raw_type":"article"},{"id":"pmh:oai:pure.atira.dk:publications/bf65b674-3a2a-4c45-a5aa-894e28ed8c96","is_oa":true,"landing_page_url":"https://research.birmingham.ac.uk/portal/en/publications/memo(bf65b674-3a2a-4c45-a5aa-894e28ed8c96).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.1186/1471-2105-7-281","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-281","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-281","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320334631","display_name":"Natural Environment Research Council","ror":"https://ror.org/02b5d8509"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1948418367.pdf","grobid_xml":"https://content.openalex.org/works/W1948418367.grobid-xml"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W247125555","https://openalex.org/W1486283310","https://openalex.org/W1508997485","https://openalex.org/W1513501940","https://openalex.org/W1540492331","https://openalex.org/W1544923801","https://openalex.org/W1549912426","https://openalex.org/W1922277291","https://openalex.org/W1968817010","https://openalex.org/W1975658784","https://openalex.org/W1978486653","https://openalex.org/W1981954911","https://openalex.org/W1984314602","https://openalex.org/W1986703369","https://openalex.org/W2004407704","https://openalex.org/W2015127046","https://openalex.org/W2018082119","https://openalex.org/W2021275596","https://openalex.org/W2024571181","https://openalex.org/W2041242386","https://openalex.org/W2042346975","https://openalex.org/W2054251921","https://openalex.org/W2066831494","https://openalex.org/W2074280444","https://openalex.org/W2095754390","https://openalex.org/W2097778810","https://openalex.org/W2102392482","https://openalex.org/W2103129584","https://openalex.org/W2109007223","https://openalex.org/W2111591568","https://openalex.org/W2121574075","https://openalex.org/W2132767127","https://openalex.org/W2133034723","https://openalex.org/W2136475817","https://openalex.org/W2144192824","https://openalex.org/W2146103026","https://openalex.org/W2148984584","https://openalex.org/W2151346683","https://openalex.org/W2152844712","https://openalex.org/W2153283265","https://openalex.org/W2157833884","https://openalex.org/W2159765281","https://openalex.org/W2162891889","https://openalex.org/W2169707043","https://openalex.org/W2315991549","https://openalex.org/W2522022223","https://openalex.org/W2579555219","https://openalex.org/W2944782266","https://openalex.org/W2945526390","https://openalex.org/W3140730010"],"related_works":["https://openalex.org/W1982455124","https://openalex.org/W2505630977","https://openalex.org/W2383709723","https://openalex.org/W1497653608","https://openalex.org/W2015932315","https://openalex.org/W2573939812","https://openalex.org/W1567213510","https://openalex.org/W1575529579","https://openalex.org/W2545844851","https://openalex.org/W3022423983"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,43,135,147,160],"genome":[2],"sequencing":[3],"projects":[4],"have":[5,23],"shown":[6],"our":[7],"limited":[8],"knowledge":[9],"regarding":[10],"gene":[11],"function,":[12],"e.g.":[13],"S.":[14],"cerevisiae":[15],"has":[16,98,204,222],"5-6,000":[17],"genes":[18,67],"of":[19,33,61,112,128,149,164,177,184,198],"which":[20],"nearly":[21],"1,000":[22],"an":[24],"uncertain":[25],"function.":[26],"Their":[27],"gross":[28],"influence":[29],"on":[30],"the":[31,34,59,62,66,82,95,110,113,123,129,139,170,175,178,182,199],"behaviour":[32],"cell":[35],"can":[36],"be":[37,49],"observed":[38],"using":[39,105],"large-scale":[40],"metabolomic":[41,44,79,130,212],"studies.":[42],"data":[45,80,131,158,193,231],"produced":[46],"need":[47],"to":[48,57,93,155,168,192,210],"structured":[50],"and":[51,68,81,89,126,133,138,162,173,208,213],"annotated":[52],"in":[53],"a":[54,74,102,106,118],"machine-usable":[55],"form":[56],"facilitate":[58,174],"exploration":[60],"hidden":[63],"links":[64],"between":[65],"their":[69],"functions.":[70],"DESCRIPTION:":[71],"MeMo":[72,97,136,203],"is":[73,153,190,233],"formal":[75],"model":[76,137,179],"for":[77,121],"representing":[78],"associated":[83,140],"metadata.":[84],"Two":[85],"predominant":[86],"platforms":[87],"(SQL":[88],"XML)":[90],"are":[91,142,166],"used":[92,154,167],"encode":[94],"model.":[96],"been":[99,205,223],"implemented":[100],"as":[101,196],"relational":[103,150,171],"database":[104,151],"hybrid":[107],"approach":[108],"combining":[109],"advantages":[111],"two":[114],"technologies.":[115],"It":[116],"represents":[117],"practical":[119],"solution":[120],"handling":[122],"sheer":[124],"volume":[125],"complexity":[127],"effectively":[132],"efficiently.":[134],"software":[141],"available":[143],"at":[144],"http://dbkgroup.org/memo/.":[145],"CONCLUSION:":[146],"maturity":[148],"technology":[152],"support":[156],"efficient":[157],"processing.":[159],"scalability":[161],"self-descriptiveness":[163],"XML":[165],"simplify":[169],"schema":[172],"extensibility":[176],"necessitated":[180],"by":[181,235],"creation":[183],"new":[185],"experimental":[186],"techniques.":[187],"Special":[188],"consideration":[189],"given":[191],"integration":[194,217],"issues":[195],"part":[197],"systems":[200],"biology":[201],"agenda.":[202],"physically":[206],"integrated":[207],"cross-linked":[209],"related":[211],"genomic":[214],"databases.":[215],"Semantic":[216],"with":[218,229],"other":[219,230],"relevant":[220],"databases":[221],"supported":[224,234],"through":[225],"ontological":[226],"annotation.":[227],"Compatibility":[228],"formats":[232],"automatic":[236],"conversion.":[237]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
