{"id":"https://openalex.org/W1484115408","doi":"https://doi.org/10.1186/1471-2105-7-273","title":"Agile methods in biomedical software development: a multi-site experience report","display_name":"Agile methods in biomedical software development: a multi-site experience report","publication_year":2006,"publication_date":"2006-05-30","ids":{"openalex":"https://openalex.org/W1484115408","doi":"https://doi.org/10.1186/1471-2105-7-273","mag":"1484115408","pmid":"https://pubmed.ncbi.nlm.nih.gov/16734914"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-7-273","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-273","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-273","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-273","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020942261","display_name":"David W. Kane","orcid":"https://orcid.org/0000-0002-6660-3934"},"institutions":[{"id":"https://openalex.org/I4210122838","display_name":"SRA International (United States)","ror":"https://ror.org/02n9cgn70","country_code":"US","type":"company","lineage":["https://openalex.org/I4210122838"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David W Kane","raw_affiliation_strings":["SRA International, 4300 Fair Lakes Court, Fairfax, VA 22033, USA. david_kane@sra.com","SRA International, Fairfax, USA"],"affiliations":[{"raw_affiliation_string":"SRA International, 4300 Fair Lakes Court, Fairfax, VA 22033, USA. david_kane@sra.com","institution_ids":["https://openalex.org/I4210122838"]},{"raw_affiliation_string":"SRA International, Fairfax, USA","institution_ids":["https://openalex.org/I4210122838"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047102652","display_name":"Moses M. Hohman","orcid":null},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Moses M Hohman","raw_affiliation_strings":["Center for Functional Genomics, Northwestern University, 2205 Tech Drive #2-160, Evanston, Illinois, 60208, USA","Center for Functional Genomics, Northwestern University, Evanston, USA"],"affiliations":[{"raw_affiliation_string":"Center for Functional Genomics, Northwestern University, 2205 Tech Drive #2-160, Evanston, Illinois, 60208, USA","institution_ids":["https://openalex.org/I111979921"]},{"raw_affiliation_string":"Center for Functional Genomics, Northwestern University, Evanston, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071787046","display_name":"Ethan Cerami","orcid":"https://orcid.org/0009-0009-2340-4490"},"institutions":[{"id":"https://openalex.org/I1334819555","display_name":"Memorial Sloan Kettering Cancer Center","ror":"https://ror.org/02yrq0923","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334819555"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ethan G Cerami","raw_affiliation_strings":["Memorial Sloan-Kettering Cancer Center, Computational Biology Center, 1275 York Avenue, Box #460, New York, NY, 10021, USA","Memorial Sloan Kettering Cancer Center - Computational Biology Center, New York, USA"],"affiliations":[{"raw_affiliation_string":"Memorial Sloan-Kettering Cancer Center, Computational Biology Center, 1275 York Avenue, Box #460, New York, NY, 10021, USA","institution_ids":["https://openalex.org/I1334819555"]},{"raw_affiliation_string":"Memorial Sloan Kettering Cancer Center - Computational Biology Center, New York, USA","institution_ids":["https://openalex.org/I1334819555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038827217","display_name":"Mick McCormick","orcid":"https://orcid.org/0000-0002-3321-5070"},"institutions":[{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]},{"id":"https://openalex.org/I175704753","display_name":"North Seattle College","ror":"https://ror.org/02d7rnk16","country_code":"US","type":"education","lineage":["https://openalex.org/I175704753"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael W McCormick","raw_affiliation_strings":["Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Seattle, WA, 98109, USA","Fred Hutchinson Cancer Research Center, Seattle, USA"],"affiliations":[{"raw_affiliation_string":"Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Seattle, WA, 98109, USA","institution_ids":["https://openalex.org/I4210089486","https://openalex.org/I175704753"]},{"raw_affiliation_string":"Fred Hutchinson Cancer Research Center, Seattle, USA","institution_ids":["https://openalex.org/I4210089486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063658735","display_name":"Karl F Kuhlmman","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Karl F Kuhlmman","raw_affiliation_strings":["Applied Biosystems, 850 Lincoln Centre Drive, Foster City, CA, 94404, USA","Applied Biosystems Foster City, USA"],"affiliations":[{"raw_affiliation_string":"Applied Biosystems, 850 Lincoln Centre Drive, Foster City, CA, 94404, USA","institution_ids":[]},{"raw_affiliation_string":"Applied Biosystems Foster City, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062175395","display_name":"Jeff Byrd","orcid":null},"institutions":[{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeff A Byrd","raw_affiliation_strings":["Vanderbilt Medical Center, 2209 Garland Avenue, 416 Eskind Biomedical Library, Nashville, TN, 37232-8340, USA","Vanderbilt Medical Center, Nashville, USA"],"affiliations":[{"raw_affiliation_string":"Vanderbilt Medical Center, 2209 Garland Avenue, 416 Eskind Biomedical Library, Nashville, TN, 37232-8340, USA","institution_ids":["https://openalex.org/I901861585"]},{"raw_affiliation_string":"Vanderbilt Medical Center, Nashville, USA","institution_ids":["https://openalex.org/I901861585"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5020942261"],"corresponding_institution_ids":["https://openalex.org/I4210122838"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.4752,"has_fulltext":true,"cited_by_count":68,"citation_normalized_percentile":{"value":0.92581651,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"7","issue":"1","first_page":"273","last_page":"273"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10430","display_name":"Software Engineering Techniques and Practices","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10430","display_name":"Software Engineering Techniques and Practices","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10260","display_name":"Software Engineering Research","score":0.9879000186920166,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13280","display_name":"Biomedical and Engineering Education","score":0.9837999939918518,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/agile-software-development","display_name":"Agile software development","score":0.8395106792449951},{"id":"https://openalex.org/keywords/agile-usability-engineering","display_name":"Agile usability engineering","score":0.644981861114502},{"id":"https://openalex.org/keywords/lean-software-development","display_name":"Lean software development","score":0.5973062515258789},{"id":"https://openalex.org/keywords/software-development","display_name":"Software development","score":0.5903581380844116},{"id":"https://openalex.org/keywords/agile-unified-process","display_name":"Agile Unified Process","score":0.5401586294174194},{"id":"https://openalex.org/keywords/pace","display_name":"Pace","score":0.5264730453491211},{"id":"https://openalex.org/keywords/extreme-programming-practices","display_name":"Extreme programming practices","score":0.49578532576560974},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.474839985370636},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4597077965736389},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.44666725397109985},{"id":"https://openalex.org/keywords/process-management","display_name":"Process management","score":0.3974774181842804},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.38123148679733276},{"id":"https://openalex.org/keywords/software-development-process","display_name":"Software development process","score":0.370472252368927},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3272230625152588},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.26668667793273926}],"concepts":[{"id":"https://openalex.org/C14185376","wikidata":"https://www.wikidata.org/wiki/Q30232","display_name":"Agile software development","level":2,"score":0.8395106792449951},{"id":"https://openalex.org/C36837802","wikidata":"https://www.wikidata.org/wiki/Q17011481","display_name":"Agile usability engineering","level":5,"score":0.644981861114502},{"id":"https://openalex.org/C199561411","wikidata":"https://www.wikidata.org/wiki/Q2665555","display_name":"Lean software development","level":5,"score":0.5973062515258789},{"id":"https://openalex.org/C529173508","wikidata":"https://www.wikidata.org/wiki/Q638608","display_name":"Software development","level":3,"score":0.5903581380844116},{"id":"https://openalex.org/C87813535","wikidata":"https://www.wikidata.org/wiki/Q956418","display_name":"Agile Unified Process","level":5,"score":0.5401586294174194},{"id":"https://openalex.org/C2777526511","wikidata":"https://www.wikidata.org/wiki/Q691543","display_name":"Pace","level":2,"score":0.5264730453491211},{"id":"https://openalex.org/C170291536","wikidata":"https://www.wikidata.org/wiki/Q5422448","display_name":"Extreme programming practices","level":5,"score":0.49578532576560974},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.474839985370636},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4597077965736389},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.44666725397109985},{"id":"https://openalex.org/C195094911","wikidata":"https://www.wikidata.org/wiki/Q14167904","display_name":"Process management","level":1,"score":0.3974774181842804},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.38123148679733276},{"id":"https://openalex.org/C180152950","wikidata":"https://www.wikidata.org/wiki/Q2904257","display_name":"Software development process","level":4,"score":0.370472252368927},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3272230625152588},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.26668667793273926},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004059","descriptor_name":"Diffusion of Innovation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004059","descriptor_name":"Diffusion of Innovation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004059","descriptor_name":"Diffusion of Innovation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004059","descriptor_name":"Diffusion of Innovation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006751","descriptor_name":"Hospital Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006751","descriptor_name":"Hospital Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006751","descriptor_name":"Hospital Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006751","descriptor_name":"Hospital Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006761","descriptor_name":"Hospitals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006761","descriptor_name":"Hospitals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006761","descriptor_name":"Hospitals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006761","descriptor_name":"Hospitals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015337","descriptor_name":"Multicenter Studies as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015337","descriptor_name":"Multicenter Studies as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015337","descriptor_name":"Multicenter Studies as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015337","descriptor_name":"Multicenter Studies as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-7-273","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-273","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-273","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16734914","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16734914","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:15b6640ad750451581bd3a2ba8bb2f53","is_oa":true,"landing_page_url":"https://doaj.org/article/15b6640ad750451581bd3a2ba8bb2f53","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 7, Iss 1, p 273 (2006)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1539031","is_oa":true,"landing_page_url":"http://doi.org/10.1186/1471-2105-7-273","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-7-273","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-273","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-273","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4399999976158142}],"awards":[],"funders":[{"id":"https://openalex.org/F4320309475","display_name":"Northwestern University","ror":"https://ror.org/000e0be47"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1484115408.pdf","grobid_xml":"https://content.openalex.org/works/W1484115408.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W18855373","https://openalex.org/W157811248","https://openalex.org/W1489801117","https://openalex.org/W1493688518","https://openalex.org/W1499352263","https://openalex.org/W1529465401","https://openalex.org/W1546958516","https://openalex.org/W1550601604","https://openalex.org/W1556368970","https://openalex.org/W1565790345","https://openalex.org/W1602304209","https://openalex.org/W1885895029","https://openalex.org/W1936573498","https://openalex.org/W1943125219","https://openalex.org/W2000831756","https://openalex.org/W2014309790","https://openalex.org/W2118762268","https://openalex.org/W2147610571","https://openalex.org/W2152270004","https://openalex.org/W2153887189","https://openalex.org/W2167806192","https://openalex.org/W2185725499","https://openalex.org/W2752455916","https://openalex.org/W2753385853","https://openalex.org/W3143245542","https://openalex.org/W4247796551"],"related_works":["https://openalex.org/W3195957455","https://openalex.org/W1497203923","https://openalex.org/W1603568760","https://openalex.org/W2159825400","https://openalex.org/W3082577432","https://openalex.org/W2113109691","https://openalex.org/W2332312330","https://openalex.org/W2182103627","https://openalex.org/W2184401452","https://openalex.org/W4205875966"],"abstract_inverted_index":{"We":[0],"found":[1,31],"that":[2,15,50,59],"the":[3,56],"agile":[4,35],"development":[5,27],"approach":[6],"was":[7],"a":[8,45,62],"good":[9],"fit":[10],"for":[11,64],"our":[12],"organizations,":[13],"and":[14,21,58],"these":[16,69],"practices":[17,49],"should":[18],"be":[19,61],"applicable":[20],"valuable":[22],"to":[23,43,53,67],"other":[24],"biomedical":[25],"software":[26],"efforts.":[28],"Although":[29],"we":[30,39],"differences":[32],"in":[33],"how":[34],"methods":[36],"were":[37,40,51],"used,":[38],"also":[41],"able":[42],"identify":[44],"set":[46],"of":[47,55],"core":[48],"common":[52],"all":[54],"groups,":[57],"could":[60],"focus":[63],"others":[65],"seeking":[66],"adopt":[68],"methods.":[70]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":5}],"updated_date":"2026-04-01T17:29:45.350535","created_date":"2025-10-10T00:00:00"}
