{"id":"https://openalex.org/W1642891250","doi":"https://doi.org/10.1186/1471-2105-7-267","title":"The use of concept maps during knowledge elicitation in ontology development processes \u2013 the nutrigenomics use case","display_name":"The use of concept maps during knowledge elicitation in ontology development processes \u2013 the nutrigenomics use case","publication_year":2006,"publication_date":"2006-05-25","ids":{"openalex":"https://openalex.org/W1642891250","doi":"https://doi.org/10.1186/1471-2105-7-267","mag":"1642891250","pmid":"https://pubmed.ncbi.nlm.nih.gov/16725019"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-7-267","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-267","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-267","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-267","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Alexander Garcia Castro","orcid":null},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alexander Garcia Castro","raw_affiliation_strings":["Microarray Informatics Team, The European Bioinformatics Institute--European Molecular Biology Laboratory Outstation, Wellcome Trust Genome Campus CB10 1SD, Cambridge Hinxton, UK. a.garcia@imb.uq.edu.au","Microarray Informatics Team, The European Bioinformatics Institute \u2013 European Molecular Biology Laboratory Outstation, Wellcome Trust Genome Campus CB10 1SD, Cambridge, Hinxton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microarray Informatics Team, The European Bioinformatics Institute--European Molecular Biology Laboratory Outstation, Wellcome Trust Genome Campus CB10 1SD, Cambridge Hinxton, UK. a.garcia@imb.uq.edu.au","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]},{"raw_affiliation_string":"Microarray Informatics Team, The European Bioinformatics Institute \u2013 European Molecular Biology Laboratory Outstation, Wellcome Trust Genome Campus CB10 1SD, Cambridge, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018395535","display_name":"Philippe Rocca\u2010Serra","orcid":"https://orcid.org/0000-0001-9853-5668"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Philippe Rocca-Serra","raw_affiliation_strings":["Microarray Informatics Team, The European Bioinformatics Institute \u2013 European Molecular Biology Laboratory Outstation, Wellcome Trust Genome Campus CB10 1SD, Cambridge, Hinxton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microarray Informatics Team, The European Bioinformatics Institute \u2013 European Molecular Biology Laboratory Outstation, Wellcome Trust Genome Campus CB10 1SD, Cambridge, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049799218","display_name":"Robert Stevens","orcid":"https://orcid.org/0000-0002-6038-9025"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Robert Stevens","raw_affiliation_strings":["School of Computer Science, University of Manchester, Kilburn Building, Oxford Road Manchester M13 9PL, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Kilburn Building, Oxford Road Manchester M13 9PL, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075874654","display_name":"Chris Taylor","orcid":"https://orcid.org/0000-0002-9666-798X"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Chris Taylor","raw_affiliation_strings":["Microarray Informatics Team, The European Bioinformatics Institute \u2013 European Molecular Biology Laboratory Outstation, Wellcome Trust Genome Campus CB10 1SD, Cambridge, Hinxton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microarray Informatics Team, The European Bioinformatics Institute \u2013 European Molecular Biology Laboratory Outstation, Wellcome Trust Genome Campus CB10 1SD, Cambridge, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074857926","display_name":"Karim Nashar","orcid":null},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Karim Nashar","raw_affiliation_strings":["School of Computer Science, University of Manchester, Kilburn Building, Oxford Road Manchester M13 9PL, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Kilburn Building, Oxford Road Manchester M13 9PL, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023552489","display_name":"Mark A. Ragan","orcid":"https://orcid.org/0000-0003-1672-7020"},"institutions":[{"id":"https://openalex.org/I1337719021","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86","country_code":"AU","type":"government","lineage":["https://openalex.org/I1337719021","https://openalex.org/I2801453606","https://openalex.org/I4210132349"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Mark A Ragan","raw_affiliation_strings":["Australian Research Council Centre in Bioinformatics, Institute for Molecular Bioscience, The University of Queensland 4072, St Lucia, Australia","Institute for Molecular Bioscience, The University of Queensland 4072, Brisbane, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Australian Research Council Centre in Bioinformatics, Institute for Molecular Bioscience, The University of Queensland 4072, St Lucia, Australia","institution_ids":["https://openalex.org/I1337719021","https://openalex.org/I165143802"]},{"raw_affiliation_string":"Institute for Molecular Bioscience, The University of Queensland 4072, Brisbane, Australia","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008806860","display_name":"Susanna\u2010Assunta Sansone","orcid":"https://orcid.org/0000-0001-5306-5690"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Susanna-Assunta Sansone","raw_affiliation_strings":["Microarray Informatics Team, The European Bioinformatics Institute \u2013 European Molecular Biology Laboratory Outstation, Wellcome Trust Genome Campus CB10 1SD, Cambridge, Hinxton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microarray Informatics Team, The European Bioinformatics Institute \u2013 European Molecular Biology Laboratory Outstation, Wellcome Trust Genome Campus CB10 1SD, Cambridge, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5008806860"],"corresponding_institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":2.923,"has_fulltext":true,"cited_by_count":77,"citation_normalized_percentile":{"value":0.90635991,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"7","issue":"1","first_page":"267","last_page":"267"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6692000031471252,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6692000031471252,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.21580000221729279,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13984","display_name":"Nutrition, Genetics, and Disease","score":0.030300000682473183,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7826186418533325},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.736779510974884},{"id":"https://openalex.org/keywords/idef5","display_name":"IDEF5","score":0.6990903615951538},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.6199713349342346},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.559834361076355},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.5519348382949829},{"id":"https://openalex.org/keywords/process-ontology","display_name":"Process ontology","score":0.5377286672592163},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5331416130065918},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5230506658554077},{"id":"https://openalex.org/keywords/domain-knowledge","display_name":"Domain knowledge","score":0.448182612657547},{"id":"https://openalex.org/keywords/nutrigenomics","display_name":"Nutrigenomics","score":0.44652417302131653},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.4400389492511749},{"id":"https://openalex.org/keywords/subject-matter-expert","display_name":"Subject-matter expert","score":0.4245084524154663},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.42233386635780334},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.36178678274154663},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.3458361029624939},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.2621591091156006},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.15251553058624268},{"id":"https://openalex.org/keywords/expert-system","display_name":"Expert system","score":0.1511189341545105}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7826186418533325},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.736779510974884},{"id":"https://openalex.org/C118248724","wikidata":"https://www.wikidata.org/wiki/Q5969997","display_name":"IDEF5","level":4,"score":0.6990903615951538},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.6199713349342346},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.559834361076355},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.5519348382949829},{"id":"https://openalex.org/C137003198","wikidata":"https://www.wikidata.org/wiki/Q7247296","display_name":"Process ontology","level":3,"score":0.5377286672592163},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5331416130065918},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5230506658554077},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.448182612657547},{"id":"https://openalex.org/C97633540","wikidata":"https://www.wikidata.org/wiki/Q4328195","display_name":"Nutrigenomics","level":3,"score":0.44652417302131653},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.4400389492511749},{"id":"https://openalex.org/C105002631","wikidata":"https://www.wikidata.org/wiki/Q4833645","display_name":"Subject-matter expert","level":3,"score":0.4245084524154663},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.42233386635780334},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.36178678274154663},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.3458361029624939},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.2621591091156006},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.15251553058624268},{"id":"https://openalex.org/C58328972","wikidata":"https://www.wikidata.org/wiki/Q184609","display_name":"Expert system","level":2,"score":0.1511189341545105},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009747","descriptor_name":"Nutritional Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009747","descriptor_name":"Nutritional Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009747","descriptor_name":"Nutritional Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009747","descriptor_name":"Nutritional Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-7-267","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-267","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-267","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16725019","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16725019","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/95157e53-2285-4900-9eea-4428dcb1acc9","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/95157e53-2285-4900-9eea-4428dcb1acc9","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Castro, A G, Rocca-Serra, P, Stevens, R, Taylor, C, Nashar, K, Ragan, M A & Sansone, S A 2006, 'The use of concept maps during knowledge elicitation in ontology development processes - The nutrigenomics use case', BMC Bioinformatics, vol. 7, 267. https://doi.org/10.1186/1471-2105-7-267","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:3b95429db6a642c487c16802164428b6","is_oa":false,"landing_page_url":"https://doaj.org/article/3b95429db6a642c487c16802164428b6","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 7, Iss 1, p 267 (2006)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:303646","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1524992","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:publications/95157e53-2285-4900-9eea-4428dcb1acc9","is_oa":true,"landing_page_url":"https://www.research.manchester.ac.uk/portal/en/publications/the-use-of-concept-maps-during-knowledge-elicitation-in-ontology-development-processes--the-nutrigenomics-use-case(95157e53-2285-4900-9eea-4428dcb1acc9).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Castro, A G, Rocca-Serra, P, Stevens, R, Taylor, C, Nashar, K, Ragan, M A & Sansone, S A 2006, 'The use of concept maps during knowledge elicitation in ontology development processes - The nutrigenomics use case', BMC Bioinformatics, vol. 7, 267. https://doi.org/10.1186/1471-2105-7-267","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-7-267","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-267","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-267","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5699999928474426,"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1642891250.pdf","grobid_xml":"https://content.openalex.org/works/W1642891250.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W70048713","https://openalex.org/W92935989","https://openalex.org/W194637477","https://openalex.org/W1541066760","https://openalex.org/W1550261110","https://openalex.org/W1568922413","https://openalex.org/W1803241704","https://openalex.org/W1965465660","https://openalex.org/W1987697835","https://openalex.org/W1999789303","https://openalex.org/W2009000548","https://openalex.org/W2013134176","https://openalex.org/W2026712005","https://openalex.org/W2034262428","https://openalex.org/W2049801811","https://openalex.org/W2068768700","https://openalex.org/W2074944495","https://openalex.org/W2103260426","https://openalex.org/W2107879810","https://openalex.org/W2122174694","https://openalex.org/W2124957697","https://openalex.org/W2133992441","https://openalex.org/W2144303444","https://openalex.org/W2145003897","https://openalex.org/W2165666845","https://openalex.org/W2233043322","https://openalex.org/W2329618867","https://openalex.org/W2340987404","https://openalex.org/W2621335088","https://openalex.org/W3213085890","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W991275336","https://openalex.org/W1506177826","https://openalex.org/W2094112778","https://openalex.org/W2125569773","https://openalex.org/W1508812357","https://openalex.org/W2726617685","https://openalex.org/W48521009","https://openalex.org/W2907083123","https://openalex.org/W2398356932","https://openalex.org/W1621723427"],"abstract_inverted_index":{"BACKGROUND:":[0],"Incorporation":[1],"of":[2,10,22,32,56,73,80,122,142,149,160,164,169],"ontologies":[3,75,100,171],"into":[4],"annotations":[5],"has":[6],"enabled":[7],"'semantic":[8],"integration'":[9],"complex":[11],"data,":[12],"making":[13],"explicit":[14],"the":[15,23,30,61,68,71,74,77,84,102,120,146,150,167,191],"knowledge":[16,126,137],"within":[17,101,181],"a":[18,33,96,130],"certain":[19],"field.":[20],"One":[21],"major":[24],"bottlenecks":[25],"in":[26,190],"developing":[27,99],"bio-ontologies":[28,81],"is":[29,46],"lack":[31],"unified":[34],"methodology.":[35],"Different":[36],"methodologies":[37],"have":[38,178],"been":[39],"proposed":[40,90],"for":[41,51,63,98,114],"different":[42],"scenarios,":[43],"but":[44],"there":[45],"no":[47],"agreed-upon":[48],"standard":[49],"methodology":[50,97],"building":[52,155],"ontologies.":[53],"The":[54,140],"involvement":[55],"geographically":[57],"distributed":[58],"domain":[59,64,134],"experts,":[60],"need":[62],"experts":[65],"to":[66,166,174],"lead":[67],"design":[69],"process,":[70],"application":[72,173],"and":[76,112,136,172],"life":[78],"cycles":[79],"are":[82,145],"amongst":[83],"features":[85],"not":[86],"considered":[87],"by":[88],"previously":[89],"methodologies.":[91],"RESULTS:":[92],"Here,":[93],"we":[94,152],"present":[95],"biological":[103],"domain.":[104],"We":[105,118,177],"describe":[106],"our":[107,182],"scenario,":[108],"competency":[109],"questions,":[110],"results":[111],"milestones":[113],"each":[115],"methodological":[116],"stage.":[117],"introduce":[119],"use":[121,159],"concept":[123,161],"maps":[124,185],"during":[125],"acquisition":[127],"phases":[128],"as":[129],"feasible":[131],"transition":[132],"between":[133],"expert":[135],"engineer.":[138],"CONCLUSION:":[139],"contributions":[141],"this":[143],"paper":[144],"thorough":[147],"description":[148],"steps":[151],"suggest":[153],"when":[154],"an":[156,187],"ontology,":[157],"example":[158],"maps,":[162],"consideration":[163],"applicability":[165],"development":[168,192],"lower-level":[170],"decentralised":[175],"environments.":[176],"found":[179],"that":[180],"scenario":[183],"conceptual":[184],"played":[186],"important":[188],"role":[189],"process.":[193]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":3}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
