{"id":"https://openalex.org/W1908614788","doi":"https://doi.org/10.1186/1471-2105-7-256","title":"The development and validation of the Virtual Tissue Matrix, a software application that facilitates the review of tissue microarrays on line","display_name":"The development and validation of the Virtual Tissue Matrix, a software application that facilitates the review of tissue microarrays on line","publication_year":2006,"publication_date":"2006-05-17","ids":{"openalex":"https://openalex.org/W1908614788","doi":"https://doi.org/10.1186/1471-2105-7-256","mag":"1908614788","pmid":"https://pubmed.ncbi.nlm.nih.gov/16707006"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-7-256","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-256","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-256","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-256","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074171253","display_name":"Catherine Conway","orcid":null},"institutions":[{"id":"https://openalex.org/I42934936","display_name":"Dublin City University","ror":"https://ror.org/04a1a1e81","country_code":"IE","type":"education","lineage":["https://openalex.org/I42934936"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Catherine M Conway","raw_affiliation_strings":["Medical Informatics Group, School of Biotechnology, Dublin City University, Dublin, Ireland. catherine.conway3@mail.dcu.ie","Medical Informatics Group, School of Biotechnology, Dublin City University, Dublin, Ireland and National Institute for Cellular Biotechnology, Dublin City University, Dublin, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Informatics Group, School of Biotechnology, Dublin City University, Dublin, Ireland. catherine.conway3@mail.dcu.ie","institution_ids":["https://openalex.org/I42934936"]},{"raw_affiliation_string":"Medical Informatics Group, School of Biotechnology, Dublin City University, Dublin, Ireland and National Institute for Cellular Biotechnology, Dublin City University, Dublin, Ireland","institution_ids":["https://openalex.org/I42934936"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038012254","display_name":"Deirdre O\u2019Shea","orcid":null},"institutions":[{"id":"https://openalex.org/I2801846703","display_name":"Beaumont Hospital","ror":"https://ror.org/043mzjj67","country_code":"IE","type":"healthcare","lineage":["https://openalex.org/I2801846703"]},{"id":"https://openalex.org/I42934936","display_name":"Dublin City University","ror":"https://ror.org/04a1a1e81","country_code":"IE","type":"education","lineage":["https://openalex.org/I42934936"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Deirdre O'Shea","raw_affiliation_strings":["Department of Histopathology, Beaumont Hospital and Royal College of Surgeons, Dublin, Ireland","Medical Informatics Group, School of Biotechnology, Dublin City University, Dublin, Ireland and National Institute for Cellular Biotechnology, Dublin City University, Dublin, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Histopathology, Beaumont Hospital and Royal College of Surgeons, Dublin, Ireland","institution_ids":["https://openalex.org/I2801846703"]},{"raw_affiliation_string":"Medical Informatics Group, School of Biotechnology, Dublin City University, Dublin, Ireland and National Institute for Cellular Biotechnology, Dublin City University, Dublin, Ireland","institution_ids":["https://openalex.org/I42934936"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025088458","display_name":"Sallyann L. O\u2019Brien","orcid":null},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]},{"id":"https://openalex.org/I2801846703","display_name":"Beaumont Hospital","ror":"https://ror.org/043mzjj67","country_code":"IE","type":"healthcare","lineage":["https://openalex.org/I2801846703"]},{"id":"https://openalex.org/I42934936","display_name":"Dublin City University","ror":"https://ror.org/04a1a1e81","country_code":"IE","type":"education","lineage":["https://openalex.org/I42934936"]}],"countries":["IE"],"is_corresponding":true,"raw_author_name":"Deirdre O'Shea","raw_affiliation_strings":["Department of Histopathology, Beaumont Hospital and Royal College of Surgeons, Dublin, Ireland","Medical Informatics Group, School of Biotechnology, Dublin City University, Dublin, Ireland and National Institute for Cellular Biotechnology, Dublin City University, Dublin, Ireland","Centre for Molecular Medicine, Conway Institute of Biomolecular and Biomedical Research University College Dublin, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Histopathology, Beaumont Hospital and Royal College of Surgeons, Dublin, Ireland","institution_ids":["https://openalex.org/I2801846703"]},{"raw_affiliation_string":"Medical Informatics Group, School of Biotechnology, Dublin City University, Dublin, Ireland and National Institute for Cellular Biotechnology, Dublin City University, Dublin, Ireland","institution_ids":["https://openalex.org/I42934936"]},{"raw_affiliation_string":"Centre for Molecular Medicine, Conway Institute of Biomolecular and Biomedical Research University College Dublin, Ireland","institution_ids":["https://openalex.org/I100930933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043158429","display_name":"Darragh K Lawler","orcid":null},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]},{"id":"https://openalex.org/I42934936","display_name":"Dublin City University","ror":"https://ror.org/04a1a1e81","country_code":"IE","type":"education","lineage":["https://openalex.org/I42934936"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Sallyann O'Brien","raw_affiliation_strings":["Centre for Molecular Medicine, Conway Institute of Biomolecular and Biomedical Research University College Dublin, Ireland","Medical Informatics Group, School of Biotechnology, Dublin City University, Dublin, Ireland and National Institute for Cellular Biotechnology, Dublin City University, Dublin, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Molecular Medicine, Conway Institute of Biomolecular and Biomedical Research University College Dublin, Ireland","institution_ids":["https://openalex.org/I100930933"]},{"raw_affiliation_string":"Medical Informatics Group, School of Biotechnology, Dublin City University, Dublin, Ireland and National Institute for Cellular Biotechnology, Dublin City University, Dublin, Ireland","institution_ids":["https://openalex.org/I42934936"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015383847","display_name":"Graham D Dodrill","orcid":null},"institutions":[{"id":"https://openalex.org/I42934936","display_name":"Dublin City University","ror":"https://ror.org/04a1a1e81","country_code":"IE","type":"education","lineage":["https://openalex.org/I42934936"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Darragh K Lawler","raw_affiliation_strings":["Medical Informatics Group, School of Biotechnology, Dublin City University, Dublin, Ireland and National Institute for Cellular Biotechnology, Dublin City University, Dublin, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Informatics Group, School of Biotechnology, Dublin City University, Dublin, Ireland and National Institute for Cellular Biotechnology, Dublin City University, Dublin, Ireland","institution_ids":["https://openalex.org/I42934936"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112187554","display_name":"Anthony O\u2019Grady","orcid":null},"institutions":[{"id":"https://openalex.org/I2801846703","display_name":"Beaumont Hospital","ror":"https://ror.org/043mzjj67","country_code":"IE","type":"healthcare","lineage":["https://openalex.org/I2801846703"]},{"id":"https://openalex.org/I42934936","display_name":"Dublin City University","ror":"https://ror.org/04a1a1e81","country_code":"IE","type":"education","lineage":["https://openalex.org/I42934936"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Graham D Dodrill","raw_affiliation_strings":["Medical Informatics Group, School of Biotechnology, Dublin City University, Dublin, Ireland and National Institute for Cellular Biotechnology, Dublin City University, Dublin, Ireland","Department of Histopathology, Beaumont Hospital and Royal College of Surgeons, Dublin, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Informatics Group, School of Biotechnology, Dublin City University, Dublin, Ireland and National Institute for Cellular Biotechnology, Dublin City University, Dublin, Ireland","institution_ids":["https://openalex.org/I42934936"]},{"raw_affiliation_string":"Department of Histopathology, Beaumont Hospital and Royal College of Surgeons, Dublin, Ireland","institution_ids":["https://openalex.org/I2801846703"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079186979","display_name":"Helen L. Barrett","orcid":"https://orcid.org/0000-0001-7141-2086"},"institutions":[{"id":"https://openalex.org/I2801846703","display_name":"Beaumont Hospital","ror":"https://ror.org/043mzjj67","country_code":"IE","type":"healthcare","lineage":["https://openalex.org/I2801846703"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Anthony O'Grady","raw_affiliation_strings":["Department of Histopathology, Beaumont Hospital and Royal College of Surgeons, Dublin, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Histopathology, Beaumont Hospital and Royal College of Surgeons, Dublin, Ireland","institution_ids":["https://openalex.org/I2801846703"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081271204","display_name":"Christian Gulmann","orcid":null},"institutions":[{"id":"https://openalex.org/I2801846703","display_name":"Beaumont Hospital","ror":"https://ror.org/043mzjj67","country_code":"IE","type":"healthcare","lineage":["https://openalex.org/I2801846703"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Helen Barrett","raw_affiliation_strings":["Department of Histopathology, Beaumont Hospital and Royal College of Surgeons, Dublin, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Histopathology, Beaumont Hospital and Royal College of Surgeons, Dublin, Ireland","institution_ids":["https://openalex.org/I2801846703"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025907836","display_name":"Lorraine O\u2019Driscoll","orcid":"https://orcid.org/0000-0002-9860-8262"},"institutions":[{"id":"https://openalex.org/I2801846703","display_name":"Beaumont Hospital","ror":"https://ror.org/043mzjj67","country_code":"IE","type":"healthcare","lineage":["https://openalex.org/I2801846703"]},{"id":"https://openalex.org/I42934936","display_name":"Dublin City University","ror":"https://ror.org/04a1a1e81","country_code":"IE","type":"education","lineage":["https://openalex.org/I42934936"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Christian Gulmann","raw_affiliation_strings":["Department of Histopathology, Beaumont Hospital and Royal College of Surgeons, Dublin, Ireland","Medical Informatics Group, School of Biotechnology, Dublin City University, Dublin, Ireland and National Institute for Cellular Biotechnology, Dublin City University, Dublin, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Histopathology, Beaumont Hospital and Royal College of Surgeons, Dublin, Ireland","institution_ids":["https://openalex.org/I2801846703"]},{"raw_affiliation_string":"Medical Informatics Group, School of Biotechnology, Dublin City University, Dublin, Ireland and National Institute for Cellular Biotechnology, Dublin City University, Dublin, Ireland","institution_ids":["https://openalex.org/I42934936"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001554361","display_name":"William M. Gallagher","orcid":"https://orcid.org/0000-0002-4307-5999"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]},{"id":"https://openalex.org/I42934936","display_name":"Dublin City University","ror":"https://ror.org/04a1a1e81","country_code":"IE","type":"education","lineage":["https://openalex.org/I42934936"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Lorraine O'Driscoll","raw_affiliation_strings":["Medical Informatics Group, School of Biotechnology, Dublin City University, Dublin, Ireland and National Institute for Cellular Biotechnology, Dublin City University, Dublin, Ireland","Centre for Molecular Medicine, Conway Institute of Biomolecular and Biomedical Research University College Dublin, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Informatics Group, School of Biotechnology, Dublin City University, Dublin, Ireland and National Institute for Cellular Biotechnology, Dublin City University, Dublin, Ireland","institution_ids":["https://openalex.org/I42934936"]},{"raw_affiliation_string":"Centre for Molecular Medicine, Conway Institute of Biomolecular and Biomedical Research University College Dublin, Ireland","institution_ids":["https://openalex.org/I100930933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110045612","display_name":"Elaine W. Kay","orcid":null},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]},{"id":"https://openalex.org/I2801846703","display_name":"Beaumont Hospital","ror":"https://ror.org/043mzjj67","country_code":"IE","type":"healthcare","lineage":["https://openalex.org/I2801846703"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"William M Gallagher","raw_affiliation_strings":["Centre for Molecular Medicine, Conway Institute of Biomolecular and Biomedical Research University College Dublin, Ireland","Department of Histopathology, Beaumont Hospital and Royal College of Surgeons, Dublin, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Molecular Medicine, Conway Institute of Biomolecular and Biomedical Research University College Dublin, Ireland","institution_ids":["https://openalex.org/I100930933"]},{"raw_affiliation_string":"Department of Histopathology, Beaumont Hospital and Royal College of Surgeons, Dublin, Ireland","institution_ids":["https://openalex.org/I2801846703"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111732198","display_name":"Daniel O\u2019Shea","orcid":null},"institutions":[{"id":"https://openalex.org/I2801846703","display_name":"Beaumont Hospital","ror":"https://ror.org/043mzjj67","country_code":"IE","type":"healthcare","lineage":["https://openalex.org/I2801846703"]},{"id":"https://openalex.org/I42934936","display_name":"Dublin City University","ror":"https://ror.org/04a1a1e81","country_code":"IE","type":"education","lineage":["https://openalex.org/I42934936"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Elaine W Kay","raw_affiliation_strings":["Department of Histopathology, Beaumont Hospital and Royal College of Surgeons, Dublin, Ireland","Medical Informatics Group, School of Biotechnology, Dublin City University, Dublin, Ireland and National Institute for Cellular Biotechnology, Dublin City University, Dublin, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Histopathology, Beaumont Hospital and Royal College of Surgeons, Dublin, Ireland","institution_ids":["https://openalex.org/I2801846703"]},{"raw_affiliation_string":"Medical Informatics Group, School of Biotechnology, Dublin City University, Dublin, Ireland and National Institute for Cellular Biotechnology, Dublin City University, Dublin, Ireland","institution_ids":["https://openalex.org/I42934936"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111732198","display_name":"Daniel O\u2019Shea","orcid":null},"institutions":[{"id":"https://openalex.org/I2801846703","display_name":"Beaumont Hospital","ror":"https://ror.org/043mzjj67","country_code":"IE","type":"healthcare","lineage":["https://openalex.org/I2801846703"]},{"id":"https://openalex.org/I42934936","display_name":"Dublin City University","ror":"https://ror.org/04a1a1e81","country_code":"IE","type":"education","lineage":["https://openalex.org/I42934936"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Daniel G O'Shea","raw_affiliation_strings":["Department of Histopathology, Beaumont Hospital and Royal College of Surgeons, Dublin, Ireland","Medical Informatics Group, School of Biotechnology, Dublin City University, Dublin, Ireland and National Institute for Cellular Biotechnology, Dublin City University, Dublin, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Histopathology, Beaumont Hospital and Royal College of Surgeons, Dublin, Ireland","institution_ids":["https://openalex.org/I2801846703"]},{"raw_affiliation_string":"Medical Informatics Group, School of Biotechnology, Dublin City University, Dublin, Ireland and National Institute for Cellular Biotechnology, Dublin City University, Dublin, Ireland","institution_ids":["https://openalex.org/I42934936"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111732198","display_name":"Daniel O\u2019Shea","orcid":null},"institutions":[{"id":"https://openalex.org/I2801846703","display_name":"Beaumont Hospital","ror":"https://ror.org/043mzjj67","country_code":"IE","type":"healthcare","lineage":["https://openalex.org/I2801846703"]},{"id":"https://openalex.org/I42934936","display_name":"Dublin City University","ror":"https://ror.org/04a1a1e81","country_code":"IE","type":"education","lineage":["https://openalex.org/I42934936"]}],"countries":["IE"],"is_corresponding":true,"raw_author_name":"Daniel G O'Shea","raw_affiliation_strings":["Department of Histopathology, Beaumont Hospital and Royal College of Surgeons, Dublin, Ireland","Medical Informatics Group, School of Biotechnology, Dublin City University, Dublin, Ireland and National Institute for Cellular Biotechnology, Dublin City University, Dublin, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Histopathology, Beaumont Hospital and Royal College of Surgeons, Dublin, Ireland","institution_ids":["https://openalex.org/I2801846703"]},{"raw_affiliation_string":"Medical Informatics Group, School of Biotechnology, Dublin City University, Dublin, Ireland and National Institute for Cellular Biotechnology, Dublin City University, Dublin, Ireland","institution_ids":["https://openalex.org/I42934936"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5025088458","https://openalex.org/A5111732198"],"corresponding_institution_ids":["https://openalex.org/I100930933","https://openalex.org/I2801846703","https://openalex.org/I42934936"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.0805,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.73841196,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"7","issue":"1","first_page":"256","last_page":"256"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.3425000011920929,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.3425000011920929,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10755","display_name":"HER2/EGFR in Cancer Research","score":0.3337000012397766,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12867","display_name":"Advanced Biosensing Techniques and Applications","score":0.028699999675154686,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.667604923248291},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6469336748123169},{"id":"https://openalex.org/keywords/tissue-microarray","display_name":"Tissue microarray","score":0.6456865072250366},{"id":"https://openalex.org/keywords/dicom","display_name":"DICOM","score":0.47023245692253113},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34197813272476196},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.337253212928772},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.24113163352012634},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.10886549949645996},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.09105899930000305}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.667604923248291},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6469336748123169},{"id":"https://openalex.org/C193270364","wikidata":"https://www.wikidata.org/wiki/Q17141925","display_name":"Tissue microarray","level":3,"score":0.6456865072250366},{"id":"https://openalex.org/C77331912","wikidata":"https://www.wikidata.org/wiki/Q81095","display_name":"DICOM","level":2,"score":0.47023245692253113},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34197813272476196},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.337253212928772},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.24113163352012634},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.10886549949645996},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.09105899930000305},{"id":"https://openalex.org/C204232928","wikidata":"https://www.wikidata.org/wiki/Q899285","display_name":"Immunohistochemistry","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009862","descriptor_name":"Online Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009862","descriptor_name":"Online Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009862","descriptor_name":"Online Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012986","descriptor_name":"Software Validation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012986","descriptor_name":"Software Validation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012986","descriptor_name":"Software Validation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019544","descriptor_name":"Equipment Failure Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019544","descriptor_name":"Equipment Failure Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019544","descriptor_name":"Equipment Failure Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D046888","descriptor_name":"Tissue Array Analysis","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D046888","descriptor_name":"Tissue Array Analysis","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D046888","descriptor_name":"Tissue Array Analysis","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D046888","descriptor_name":"Tissue Array Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D046888","descriptor_name":"Tissue Array Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D046888","descriptor_name":"Tissue Array Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/1471-2105-7-256","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-256","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-256","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16707006","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16707006","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:9b44fbd7fa4b40089b9d2697c9a187d3","is_oa":false,"landing_page_url":"https://doaj.org/article/9b44fbd7fa4b40089b9d2697c9a187d3","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 7, Iss 1, p 256 (2006)","raw_type":"article"},{"id":"pmh:oai:epubs.rcsi.ie:pathart-1004","is_oa":false,"landing_page_url":"https://epubs.rcsi.ie/pathart/5","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Pathology Articles","raw_type":"text"},{"id":"pmh:oai:europepmc.org:267236","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC1479843","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/10789184","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/The_development_and_validation_of_the_Virtual_Tissue_Matrix_a_software_application_that_facilitates_the_review_of_tissue_microarrays_on_line_/10789184","pdf_url":null,"source":{"id":"https://openalex.org/S4306402621","display_name":"INDIGO (University of Illinois at Chicago)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39422238","host_organization_name":"University of Illinois Chicago","host_organization_lineage":["https://openalex.org/I39422238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1479843","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1479843","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-7-256","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-256","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-256","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320312041","display_name":"Health Research Board","ror":"https://ror.org/003hb2249"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1908614788.pdf","grobid_xml":"https://content.openalex.org/works/W1908614788.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1520768026","https://openalex.org/W1891491902","https://openalex.org/W1988460748","https://openalex.org/W1989790390","https://openalex.org/W2003787237","https://openalex.org/W2019688775","https://openalex.org/W2031255931","https://openalex.org/W2034978601","https://openalex.org/W2042497109","https://openalex.org/W2044503822","https://openalex.org/W2045376963","https://openalex.org/W2050513336","https://openalex.org/W2061139399","https://openalex.org/W2086640677","https://openalex.org/W2087810003","https://openalex.org/W2100716241","https://openalex.org/W2105967608","https://openalex.org/W2129860749","https://openalex.org/W2144286975","https://openalex.org/W2148936748","https://openalex.org/W2164582755","https://openalex.org/W2164777277"],"related_works":["https://openalex.org/W2352944256","https://openalex.org/W2528730528","https://openalex.org/W2358954258","https://openalex.org/W2376146719","https://openalex.org/W2355550873","https://openalex.org/W2370879019","https://openalex.org/W1513288651","https://openalex.org/W2351853078","https://openalex.org/W2347834369","https://openalex.org/W2021592708"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,131],"Tissue":[2,79],"Microarray":[3],"(TMA)":[4],"facilitates":[5,50,124],"high-throughput":[6],"analysis":[7],"of":[8,10,21,33,59,76,96,127,140,179,184,214,223,238,250,257,282,291],"hundreds":[9],"tissue":[11,241],"specimens":[12],"simultaneously.":[13],"However,":[14],"bottlenecks":[15],"in":[16,41,118,298,302],"the":[17,22,51,71,77,89,125,151,180,212,219,239,258,292,299,303],"storage":[18,58],"and":[19,43,56,61,74,100,161,190,203,205,216,221,226,286,288],"manipulation":[20],"data":[23,44,62],"generated":[24,111,149],"from":[25,112],"TMA":[26,65,98,108,114,142,192],"reviews":[27,267],"have":[28,36,296],"become":[29],"apparent.":[30],"A":[31],"number":[32],"software":[34],"applications":[35],"been":[37],"developed":[38],"to":[39,103,136,166,169],"assist":[40],"image":[42,168],"management;":[45],"however":[46],"no":[47],"solution":[48],"currently":[49],"easy":[52],"online":[53],"review,":[54],"scoring":[55,129],"subsequent":[57],"images":[60,95,235],"associated":[63,120],"with":[64,243],"experimentation.":[66],"RESULTS:":[67],"This":[68],"paper":[69],"describes":[70],"design,":[72],"development":[73],"validation":[75],"Virtual":[78],"Matrix":[80],"(VTM).":[81],"Through":[82],"an":[83,119],"intuitive":[84],"HTML":[85],"driven":[86],"user":[87],"interface,":[88],"VTM":[90,152,181,234],"provides":[91],"digital/virtual":[92],"slide":[93],"based":[94],"each":[97,107,141,167],"core":[99,215],"a":[101,113,156,244,277],"means":[102],"record":[104,137],"observations":[105],"on":[106],"spot.":[109],"Data":[110],"review":[115],"is":[116],"stored":[117],"relational":[121],"database,":[122],"which":[123,294],"use":[126],"flexible":[128],"forms.":[130],"system":[132],"allows":[133],"multiple":[134],"users":[135],"their":[138],"interpretation":[139],"spot":[143],"for":[144,150,200,211,254,279],"any":[145,171],"parameters":[146,260],"assessed.":[147,261],"Images":[148],"were":[153,164,197,206,247],"captured":[154],"using":[155,276],"standard":[157],"background":[158,172,283],"lighting":[159,173,284],"intensity":[160,222],"corrective":[162],"algorithms":[163],"applied":[165],"eliminate":[170],"hue":[174],"inconsistencies":[175],"or":[176],"vignetting.":[177],"Validation":[178],"involved":[182],"examination":[183],"inter-and":[185,251],"intra-observer":[186,252],"variability":[187],"between":[188],"microscope":[189],"digital":[191,233,266],"reviews.":[193],"Six":[194],"bladder":[195],"TMAs":[196,275],"immunohistochemically":[198],"stained":[199],"E-Cadherin,":[201],"beta-Catenin":[202],"PhosphoMet":[204],"assessed":[207],"by":[208],"two":[209],"reviewers":[210],"amount":[213,220],"tumour":[217],"present,":[218],"membrane,":[224],"cytoplasmic":[225],"nuclear":[227],"staining.":[228],"CONCLUSION:":[229],"Results":[230,262],"show":[231],"that":[232,265],"are":[236],"representative":[237],"original":[240],"viewed":[242],"microscope.":[245],"There":[246],"equivalent":[248],"levels":[249],"agreement":[253],"five":[255],"out":[256],"eight":[259],"also":[263],"suggest":[264],"may":[268,295],"correct":[269],"potential":[270,289],"problems":[271],"experienced":[272],"when":[273],"reviewing":[274],"microscope,":[278],"example,":[280],"removal":[281],"variance":[285],"tint,":[287],"disorientation":[290],"reviewer,":[293],"resulted":[297],"discrepancies":[300],"evident":[301],"remaining":[304],"three":[305],"parameters.":[306]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
