{"id":"https://openalex.org/W1589216124","doi":"https://doi.org/10.1186/1471-2105-7-21","title":"GenoLink: a graph-based querying and browsing system for investigating the function of genes and proteins","display_name":"GenoLink: a graph-based querying and browsing system for investigating the function of genes and proteins","publication_year":2006,"publication_date":"2006-01-17","ids":{"openalex":"https://openalex.org/W1589216124","doi":"https://doi.org/10.1186/1471-2105-7-21","mag":"1589216124"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-7-21","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-21","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-21","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-21","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103534128","display_name":"Patrick Durand","orcid":"https://orcid.org/0000-0002-5597-4457"},"institutions":[{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I4210152921","display_name":"Hybrigenics (France)","ror":"https://ror.org/04nj1pt13","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210152921"]},{"id":"https://openalex.org/I4210133778","display_name":"Centre Inria de l'Universit\u00e9 de Rennes","ror":"https://ror.org/04040yw90","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210133778"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Patrick Durand","raw_affiliation_strings":["Hybrigenics SA, 3\u20135 Impasse Reille, 75014, Paris, France","IRISA-INRIA, Campus de Beaulieu, 35402, Rennes Cedex, France","SYMBIOSE - Biological systems and models, bioinformatics and sequences (Campus de Beaulieu, 35042 Rennes cedex - France)","Hybrigenics [Paris] (3-5 impasse Reille, 75014 Paris - France)"],"affiliations":[{"raw_affiliation_string":"Hybrigenics SA, 3\u20135 Impasse Reille, 75014, Paris, France","institution_ids":["https://openalex.org/I4210152921"]},{"raw_affiliation_string":"IRISA-INRIA, Campus de Beaulieu, 35402, Rennes Cedex, France","institution_ids":["https://openalex.org/I2802519937","https://openalex.org/I4210133778"]},{"raw_affiliation_string":"SYMBIOSE - Biological systems and models, bioinformatics and sequences (Campus de Beaulieu, 35042 Rennes cedex - France)","institution_ids":[]},{"raw_affiliation_string":"Hybrigenics [Paris] (3-5 impasse Reille, 75014 Paris - France)","institution_ids":["https://openalex.org/I4210152921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028561294","display_name":"Laurent Labarre","orcid":null},"institutions":[{"id":"https://openalex.org/I4210115028","display_name":"Genoscope","ror":"https://ror.org/028pnqf58","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210115028"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210152921","display_name":"Hybrigenics (France)","ror":"https://ror.org/04nj1pt13","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210152921"]},{"id":"https://openalex.org/I4210096708","display_name":"G\u00e9nomique M\u00e9tabolique du Genoscope","ror":"https://ror.org/00xc55v17","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210096427","https://openalex.org/I4210096708","https://openalex.org/I4210113668","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Laurent Labarre","raw_affiliation_strings":["AGC, UMR CNRS 8030 \u2013 Genoscope, 2 rue Gaston Cr\u00e9mieux, 91000, Evry, France","Hybrigenics SA, 3\u20135 Impasse Reille, 75014, Paris, France","Hybrigenics [Paris] (3-5 impasse Reille, 75014 Paris - France)","UMR 8030 - G\u00e9nomique m\u00e9tabolique (GENOSCOPE, 2 rue Gaston Cr\u00e9mieux 91057 Evry Cedex - France)"],"affiliations":[{"raw_affiliation_string":"AGC, UMR CNRS 8030 \u2013 Genoscope, 2 rue Gaston Cr\u00e9mieux, 91000, Evry, France","institution_ids":["https://openalex.org/I4210115028","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Hybrigenics SA, 3\u20135 Impasse Reille, 75014, Paris, France","institution_ids":["https://openalex.org/I4210152921"]},{"raw_affiliation_string":"Hybrigenics [Paris] (3-5 impasse Reille, 75014 Paris - France)","institution_ids":["https://openalex.org/I4210152921"]},{"raw_affiliation_string":"UMR 8030 - G\u00e9nomique m\u00e9tabolique (GENOSCOPE, 2 rue Gaston Cr\u00e9mieux 91057 Evry Cedex - France)","institution_ids":["https://openalex.org/I4210096708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066264606","display_name":"Alain Meil","orcid":null},"institutions":[{"id":"https://openalex.org/I4210152921","display_name":"Hybrigenics (France)","ror":"https://ror.org/04nj1pt13","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210152921"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Alain Meil","raw_affiliation_strings":["Hybrigenics SA, 3\u20135 Impasse Reille, 75014, Paris, France","Hybrigenics [Paris] (3-5 impasse Reille, 75014 Paris - France)"],"affiliations":[{"raw_affiliation_string":"Hybrigenics SA, 3\u20135 Impasse Reille, 75014, Paris, France","institution_ids":["https://openalex.org/I4210152921"]},{"raw_affiliation_string":"Hybrigenics [Paris] (3-5 impasse Reille, 75014 Paris - France)","institution_ids":["https://openalex.org/I4210152921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015672510","display_name":"Jean-Louis Divol","orcid":null},"institutions":[{"id":"https://openalex.org/I4210152921","display_name":"Hybrigenics (France)","ror":"https://ror.org/04nj1pt13","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210152921"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jean-Louis Divol","raw_affiliation_strings":["Hybrigenics SA, 3\u20135 Impasse Reille, 75014, Paris, France","Hybrigenics [Paris] (3-5 impasse Reille, 75014 Paris - France)"],"affiliations":[{"raw_affiliation_string":"Hybrigenics SA, 3\u20135 Impasse Reille, 75014, Paris, France","institution_ids":["https://openalex.org/I4210152921"]},{"raw_affiliation_string":"Hybrigenics [Paris] (3-5 impasse Reille, 75014 Paris - France)","institution_ids":["https://openalex.org/I4210152921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033323351","display_name":"Yves Vandenbrouck","orcid":"https://orcid.org/0000-0002-1292-373X"},"institutions":[{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I4210110641","display_name":"CEA Cadarache","ror":"https://ror.org/01rs1gy10","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I4210110641"]},{"id":"https://openalex.org/I4210124567","display_name":"Teem Photonics (France)","ror":"https://ror.org/02t80dd48","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210124567"]},{"id":"https://openalex.org/I3020098449","display_name":"CEA Grenoble","ror":"https://ror.org/02mg6n827","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I3020098449"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Yves Vandenbrouck","raw_affiliation_strings":["DRDC/BIM, CEA-Grenoble, 17 Avenue des martyrs, 38054, Grenoble Cedex 9, France","Genome Express, 11 Chemin des Pr\u00e9s, 38944, Meylan, France","GENOME Express - GENOME Express (GENOME EXPRESS 11 che des Pres 38944 Meylan Cedex T 04 56 38 11 11 Fx 04 56 38 11 00 - France)","CEA - Commissariat \u00e0 l'\u00e9nergie atomique et aux \u00e9nergies alternatives (Centre de Saclay\r\nCentre de Grenoble\r\nCentre de Cadarache\r\netc - France)"],"affiliations":[{"raw_affiliation_string":"DRDC/BIM, CEA-Grenoble, 17 Avenue des martyrs, 38054, Grenoble Cedex 9, France","institution_ids":["https://openalex.org/I3020098449","https://openalex.org/I2738703131"]},{"raw_affiliation_string":"Genome Express, 11 Chemin des Pr\u00e9s, 38944, Meylan, France","institution_ids":["https://openalex.org/I4210124567"]},{"raw_affiliation_string":"GENOME Express - GENOME Express (GENOME EXPRESS 11 che des Pres 38944 Meylan Cedex T 04 56 38 11 11 Fx 04 56 38 11 00 - France)","institution_ids":[]},{"raw_affiliation_string":"CEA - Commissariat \u00e0 l'\u00e9nergie atomique et aux \u00e9nergies alternatives (Centre de Saclay\r\nCentre de Grenoble\r\nCentre de Cadarache\r\netc - France)","institution_ids":["https://openalex.org/I3020098449","https://openalex.org/I2738703131","https://openalex.org/I4210110641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040461698","display_name":"Alain Viari","orcid":"https://orcid.org/0000-0002-1329-7777"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Alain Viari","raw_affiliation_strings":["INRIA Rh\u00f4ne-Alpes, 655 Avenue de l'Europe, 38334, Saint-Ismier Cedex, France","HELIX - Computer science and genomics (Universit\u00e9 Claude Bernard (Lyon 1),\r\nCampus DOUA\r\n43, Boulevard du 11 Novembre 1918\r\n69622 Villeurbanne cedex - France)"],"affiliations":[{"raw_affiliation_string":"INRIA Rh\u00f4ne-Alpes, 655 Avenue de l'Europe, 38334, Saint-Ismier Cedex, France","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"HELIX - Computer science and genomics (Universit\u00e9 Claude Bernard (Lyon 1),\r\nCampus DOUA\r\n43, Boulevard du 11 Novembre 1918\r\n69622 Villeurbanne cedex - France)","institution_ids":["https://openalex.org/I100532134"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057755023","display_name":"J\u00e9r\u00f4me Wojcik","orcid":"https://orcid.org/0000-0003-3250-2884"},"institutions":[{"id":"https://openalex.org/I4210085925","display_name":"Centre National de Recherche en G\u00e9nomique Humaine","ror":"https://ror.org/004yvsb77","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2738703131","https://openalex.org/I2738703131","https://openalex.org/I4210085925","https://openalex.org/I4210113668","https://openalex.org/I4405259120"]},{"id":"https://openalex.org/I4210152921","display_name":"Hybrigenics (France)","ror":"https://ror.org/04nj1pt13","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210152921"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"J\u00e9r\u00f4me Wojcik","raw_affiliation_strings":["Hybrigenics SA, 3\u20135 Impasse Reille, 75014, Paris, France","Serono Genetics Institute, Route Nationale 7, 91030, Evry Cedex, France","Serono Genetics Institute S.A.[Evry] (Route Nationale 7, 91030 Evry Cedex, France - France)","Hybrigenics [Paris] (3-5 impasse Reille, 75014 Paris - France)"],"affiliations":[{"raw_affiliation_string":"Hybrigenics SA, 3\u20135 Impasse Reille, 75014, Paris, France","institution_ids":["https://openalex.org/I4210152921"]},{"raw_affiliation_string":"Serono Genetics Institute, Route Nationale 7, 91030, Evry Cedex, France","institution_ids":["https://openalex.org/I4210085925"]},{"raw_affiliation_string":"Serono Genetics Institute S.A.[Evry] (Route Nationale 7, 91030 Evry Cedex, France - France)","institution_ids":[]},{"raw_affiliation_string":"Hybrigenics [Paris] (3-5 impasse Reille, 75014 Paris - France)","institution_ids":["https://openalex.org/I4210152921"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5103534128"],"corresponding_institution_ids":["https://openalex.org/I2802519937","https://openalex.org/I4210133778","https://openalex.org/I4210152921"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.5426,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.6311905,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"7","issue":"1","first_page":"21","last_page":"21"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8078842163085938},{"id":"https://openalex.org/keywords/graph-database","display_name":"Graph database","score":0.6301987171173096},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5551429390907288},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5283031463623047},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3672366142272949},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3619074821472168}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8078842163085938},{"id":"https://openalex.org/C176225458","wikidata":"https://www.wikidata.org/wiki/Q595971","display_name":"Graph database","level":3,"score":0.6301987171173096},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5551429390907288},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5283031463623047},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3672366142272949},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3619074821472168}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.1186/1471-2105-7-21","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-21","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-21","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"mag:16417636","is_oa":false,"landing_page_url":"http://www.osti.gov/scitech/biblio/4550871-function-nucleic-acids-processes-induced-ionizing-radiation","pdf_url":null,"source":{"id":"https://openalex.org/S2754404867","display_name":"Nowotwory Journal of Oncology","issn_l":"0029-540X","issn":["0029-540X","2300-2115"],"is_oa":false,"is_in_doaj":true,"is_core":false,"host_organization":"https://openalex.org/P4310320293","host_organization_name":"Via Medica","host_organization_lineage":["https://openalex.org/P4310320293"],"host_organization_lineage_names":["Via Medica"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nowotwory Journal of Oncology","raw_type":null},{"id":"pmh:oai:HAL:hal-00784481v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-00784481","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2006, 7 (1), pp.21. ⟨10.1186/1471-2105-7-21⟩","raw_type":"Journal articles"},{"id":"pmh:oai:HAL:hal-02072519v1","is_oa":false,"landing_page_url":"https://hal.archives-ouvertes.fr/hal-02072519","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1471-2105","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:HAL:hal-04142134v1","is_oa":false,"landing_page_url":"https://hal.science/hal-04142134","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2006, 7 (1), pp.21. ⟨10.1186/1471-2105-7-21⟩","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:b363dbf5f5604aa28bfb18ad329e8b2f","is_oa":true,"landing_page_url":"https://doaj.org/article/b363dbf5f5604aa28bfb18ad329e8b2f","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 7, Iss 1, p 21 (2006)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:774385","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1382257","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-7-21","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-21","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-21","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320313934","display_name":"Institut national de recherche en informatique et en automatique (INRIA)","ror":"https://ror.org/02kvxyf05"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1589216124.pdf","grobid_xml":"https://content.openalex.org/works/W1589216124.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1988114973","https://openalex.org/W1990453950","https://openalex.org/W1997073309","https://openalex.org/W2011039300","https://openalex.org/W2040941311","https://openalex.org/W2103017472","https://openalex.org/W2108184918","https://openalex.org/W2108401170","https://openalex.org/W2109294083","https://openalex.org/W2111973517","https://openalex.org/W2114661156","https://openalex.org/W2124389489","https://openalex.org/W2126359798","https://openalex.org/W2132232959","https://openalex.org/W2136850043","https://openalex.org/W2147405597","https://openalex.org/W2154860434","https://openalex.org/W2155723007","https://openalex.org/W2165270659","https://openalex.org/W2167058518","https://openalex.org/W2168782631","https://openalex.org/W2401635485","https://openalex.org/W2476096155","https://openalex.org/W3132933998","https://openalex.org/W4253701431","https://openalex.org/W4255878025","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W978295669","https://openalex.org/W3043138253","https://openalex.org/W4391039286","https://openalex.org/W2025647117","https://openalex.org/W3033305489","https://openalex.org/W3115442681","https://openalex.org/W2007838763","https://openalex.org/W4386112722","https://openalex.org/W2391000461","https://openalex.org/W2972311463"],"abstract_inverted_index":{"Abstract":[0],"Background":[1],"A":[2,102,117,260],"large":[3],"variety":[4],"of":[5,54,123,126,198,226,240],"biological":[6],"data":[7,20,66,73,86,129,143,151,160,172,181],"can":[8,15,154,201,255,264],"be":[9,16,202,256,265],"represented":[10],"by":[11],"graphs.":[12,40,55,67],"These":[13],"graphs":[14,194],"constructed":[17],"from":[18,22,83],"heterogeneous":[19],"coming":[21],"genomic":[23,164],"and":[24,37,52,64,88,96,115,137,165,174,195,216,251,254],"post-genomic":[25,166],"technologies,":[26],"but":[27,153],"there":[28],"is":[29,120,213,229],"still":[30],"need":[31],"for":[32,48,62,157,163,177,248,267],"tools":[33],"aiming":[34],"at":[35,258,270],"exploring":[36],"analysing":[38],"such":[39,94],"This":[41,68],"paper":[42],"describes":[43],"GenoLink,":[44],"a":[45,59,71,75,106,170,214,233,238],"software":[46],"platform":[47],"the":[49,84,113,121,127,135,139,178,196,199,241],"graphical":[50,90,209],"querying":[51,65],"exploration":[53],"Results":[56],"GenoLink":[57,183,212,228],"provides":[58,70],"generic":[60,215],"framework":[61,69],"representing":[63],"graph":[72,76,107,130,142],"structure,":[74],"query":[77,103,118],"engine,":[78],"allowing":[79,219],"to":[80,92,97,112,134,221],"retrieve":[81],"sub-graphs":[82,125],"entire":[85,128],"graph,":[87],"several":[89,175,207],"interfaces":[91],"express":[93],"queries":[95],"further":[98],"explore":[99,223],"their":[100],"results.":[101],"consists":[104],"in":[105],"pattern":[108,136],"with":[109],"constraints":[110],"attached":[111],"vertices":[114],"edges.":[116],"result":[119],"set":[122],"all":[124,191],"that":[131],"are":[132,246],"isomorphic":[133],"satisfy":[138],"constraints.":[140],"The":[141],"structure":[144],"does":[145,184],"not":[146,185],"rely":[147],"upon":[148],"any":[149,158,187],"particular":[150],"model":[152,173],"dynamically":[155],"accommodate":[156],"user-supplied":[159],"model.":[161],"However,":[162],"applications,":[167],"we":[168],"provide":[169],"default":[171],"parsers":[176],"most":[179],"popular":[180],"sources.":[182],"require":[186],"programming":[188],"skill":[189],"since":[190],"operations":[192],"on":[193],"analysis":[197],"results":[200],"carried":[203],"out":[204],"graphically":[205,222],"through":[206],"dedicated":[208],"interfaces.":[210],"Conclusion":[211],"interactive":[217],"tool":[218],"biologists":[220],"various":[224],"sources":[225],"information.":[227],"distributed":[230],"either":[231],"as":[232,237],"standalone":[234],"application":[235],"or":[236],"component":[239],"Genostar/Iogma":[242],"platform.":[243],"Both":[244],"distributions":[245],"free":[247],"academic":[249],"research":[250],"teaching":[252],"purposes":[253],"requested":[257],"academy@genostar.com.":[259],"commercial":[261],"licence":[262],"form":[263],"obtained":[266],"profit":[268],"company":[269],"info@genostar.com.":[271],"See":[272],"also":[273],"http://www.genostar.org":[274],".":[275]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}