{"id":"https://openalex.org/W1892731544","doi":"https://doi.org/10.1186/1471-2105-7-103","title":"SinicView: A visualization environment for comparisons of multiple nucleotide sequence alignment tools","display_name":"SinicView: A visualization environment for comparisons of multiple nucleotide sequence alignment tools","publication_year":2006,"publication_date":"2006-03-02","ids":{"openalex":"https://openalex.org/W1892731544","doi":"https://doi.org/10.1186/1471-2105-7-103","mag":"1892731544","pmid":"https://pubmed.ncbi.nlm.nih.gov/16509994"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-7-103","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-103","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-103","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-103","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007966960","display_name":"Arthur Chun-Chieh Shih","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Arthur Chun-Chieh Shih","raw_affiliation_strings":["Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan. arthur@iis.sinica.edu.tw","Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan. arthur@iis.sinica.edu.tw","institution_ids":["https://openalex.org/I4210098366"]},{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109066875","display_name":"DT Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I4210087491","display_name":"Genomics Research Center, Academia Sinica","ror":"https://ror.org/002mmyt85","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210087491","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"DT Lee","raw_affiliation_strings":["Genomics Research Center, Academia Sinica, Taipei, 115, Taiwan","Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Research Center, Academia Sinica, Taipei, 115, Taiwan","institution_ids":["https://openalex.org/I4210087491"]},{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058164572","display_name":"Laurent Lin","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Laurent Lin","raw_affiliation_strings":["Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017388281","display_name":"Chin-Lin Peng","orcid":null},"institutions":[{"id":"https://openalex.org/I4210087491","display_name":"Genomics Research Center, Academia Sinica","ror":"https://ror.org/002mmyt85","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210087491","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chin-Lin Peng","raw_affiliation_strings":["Genomics Research Center, Academia Sinica, Taipei, 115, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Research Center, Academia Sinica, Taipei, 115, Taiwan","institution_ids":["https://openalex.org/I4210087491"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011068463","display_name":"Shiang-Heng Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Shiang-Heng Chen","raw_affiliation_strings":["Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076017001","display_name":"Yu\u2010Wei Wu","orcid":"https://orcid.org/0000-0002-5603-1194"},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yu-Wei Wu","raw_affiliation_strings":["Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087102876","display_name":"Chun-Yi Wong","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chun-Yi Wong","raw_affiliation_strings":["Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054757306","display_name":"Meng-Yuan Chou","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Meng-Yuan Chou","raw_affiliation_strings":["Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027674471","display_name":"Tze-Chang Shiao","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Tze-Chang Shiao","raw_affiliation_strings":["Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050687660","display_name":"Mu-Fen Hsieh","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Mu-Fen Hsieh","raw_affiliation_strings":["Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5109066875"],"corresponding_institution_ids":["https://openalex.org/I4210087491","https://openalex.org/I4210098366"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":1.1438,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.74433418,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"7","issue":"1","first_page":"103","last_page":"103"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9631999731063843,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9631999731063843,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.004699999932199717,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.0034000000450760126,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.7227815985679626},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.711341381072998},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7101203203201294},{"id":"https://openalex.org/keywords/alignment-free-sequence-analysis","display_name":"Alignment-free sequence analysis","score":0.6592976450920105},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.621849775314331},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.6088755130767822},{"id":"https://openalex.org/keywords/correctness","display_name":"Correctness","score":0.607614278793335},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5686658620834351},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5390296578407288},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5367954969406128},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4464688003063202},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3392767012119293},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32654237747192383},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.19510656595230103},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16758179664611816},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12289974093437195},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10425081849098206}],"concepts":[{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.7227815985679626},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.711341381072998},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7101203203201294},{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.6592976450920105},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.621849775314331},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.6088755130767822},{"id":"https://openalex.org/C55439883","wikidata":"https://www.wikidata.org/wiki/Q360812","display_name":"Correctness","level":2,"score":0.607614278793335},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5686658620834351},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5390296578407288},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5367954969406128},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4464688003063202},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3392767012119293},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32654237747192383},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.19510656595230103},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16758179664611816},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12289974093437195},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10425081849098206},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012986","descriptor_name":"Software Validation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012986","descriptor_name":"Software Validation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012986","descriptor_name":"Software Validation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-7-103","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-103","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-103","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16509994","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16509994","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:c8c85413c29e4543b77e48d38516ecdc","is_oa":false,"landing_page_url":"https://doaj.org/article/c8c85413c29e4543b77e48d38516ecdc","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 7, Iss 1, p 103 (2006)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1434773","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1434773","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-7-103","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-7-103","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-7-103","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321040","display_name":"National Science Council","ror":"https://ror.org/02kv4zf79"},{"id":"https://openalex.org/F4320321041","display_name":"Academia Sinica","ror":"https://ror.org/05bxb3784"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1892731544.pdf","grobid_xml":"https://content.openalex.org/works/W1892731544.grobid-xml"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W1519266993","https://openalex.org/W1567621547","https://openalex.org/W1964918240","https://openalex.org/W1965280193","https://openalex.org/W1981101983","https://openalex.org/W1984195830","https://openalex.org/W1985068935","https://openalex.org/W1988981743","https://openalex.org/W2004232360","https://openalex.org/W2022923253","https://openalex.org/W2025729362","https://openalex.org/W2027448315","https://openalex.org/W2053602505","https://openalex.org/W2054624670","https://openalex.org/W2058682865","https://openalex.org/W2075168304","https://openalex.org/W2085442947","https://openalex.org/W2095824228","https://openalex.org/W2097040991","https://openalex.org/W2100890434","https://openalex.org/W2103225674","https://openalex.org/W2107448064","https://openalex.org/W2107566660","https://openalex.org/W2110291136","https://openalex.org/W2111941758","https://openalex.org/W2112005772","https://openalex.org/W2112132489","https://openalex.org/W2127230663","https://openalex.org/W2127774996","https://openalex.org/W2129370581","https://openalex.org/W2129873761","https://openalex.org/W2132926880","https://openalex.org/W2137876809","https://openalex.org/W2143249496","https://openalex.org/W2144362290","https://openalex.org/W2151464048","https://openalex.org/W2152331922","https://openalex.org/W2155237411","https://openalex.org/W2158714788","https://openalex.org/W2161387979","https://openalex.org/W2161874991","https://openalex.org/W2166838894","https://openalex.org/W2168148721","https://openalex.org/W2168909179","https://openalex.org/W2169472710","https://openalex.org/W2170677539","https://openalex.org/W2247766769","https://openalex.org/W4242932535","https://openalex.org/W4248758183","https://openalex.org/W4292239814"],"related_works":["https://openalex.org/W2051969447","https://openalex.org/W2133116680","https://openalex.org/W2111937814","https://openalex.org/W2141411672","https://openalex.org/W2091678889","https://openalex.org/W1482324242","https://openalex.org/W187239587","https://openalex.org/W2730968108","https://openalex.org/W4386770652","https://openalex.org/W2158700816"],"abstract_inverted_index":{"BACKGROUND:":[0],"Deluged":[1],"by":[2,76,141,188,250,255],"the":[3,11,29,42,48,62,68,77,137,176,195,203,234,239,244,281,289],"rate":[4],"and":[5,20,56,60,65,152,170,181,206,258,279],"complexity":[6],"of":[7,32,44,54,70,100,136,194,210,213,233,246,292],"completed":[8],"genomic":[9,33],"sequences,":[10],"need":[12],"to":[13,46,51,58,88,178,271,285],"align":[14,52],"longer":[15],"sequences":[16,53,270],"becomes":[17],"more":[18,22],"urgent,":[19],"many":[21],"tools":[23,91,143,275],"have":[24,106],"thus":[25],"been":[26,107],"developed.":[27],"In":[28,155],"initial":[30,290],"stage":[31,291],"sequence":[34,102,293],"analysis,":[35],"a":[36,113,130,147,160,199],"biologist":[37,148],"is":[38],"usually":[39],"faced":[40],"with":[41,67,238],"questions":[43],"how":[45,57],"choose":[47],"best":[49],"tool":[50,78,131],"interest":[55],"analyze":[59],"visualize":[61],"alignment":[63,90,103,138,162,185,196,221,252,274,287],"results,":[64],"then":[66],"question":[69],"whether":[71],"poorly":[72,120],"aligned":[73,121,214,235],"regions":[74,122],"produced":[75],"are":[79,84,126],"indeed":[80],"not":[81,111],"homologous":[82],"or":[83,92,228,276],"just":[85],"results":[86,139,186,222,253],"due":[87],"inappropriate":[89],"scoring":[93,208,226,277],"systems":[94,278],"used.":[95],"Although":[96],"several":[97],"systematic":[98],"evaluations":[99,125],"multiple":[101],"(MSA)":[104],"programs":[105],"proposed,":[108],"they":[109],"may":[110],"provide":[112],"standard-bearer":[114],"for":[115],"most":[116,282],"biologists":[117],"because":[118],"those":[119],"in":[123,224,229,288],"these":[124],"never":[127],"discussed.":[128],"Thus,":[129],"that":[132],"allows":[133,175],"cross":[134],"comparison":[135],"obtained":[140,187,254],"different":[142,189],"simultaneously":[144],"could":[145],"help":[146],"evaluate":[149,182],"their":[150,267],"correctness":[151],"accuracy.":[153],"RESULTS:":[154],"this":[156],"paper,":[157],"we":[158],"present":[159],"versatile":[161],"visualization":[163,248],"system,":[164],"called":[165],"SinicView,":[166,263],"(for":[167],"Sequence-aligning":[168],"INnovative":[169],"Interactive":[171],"Comparison":[172],"VIEWer),":[173],"which":[174],"user":[177,217],"efficiently":[179],"compare":[180,220,272],"assorted":[183],"nucleotide":[184],"tools.":[190],"SinicView":[191],"calculates":[192],"similarity":[193],"outputs":[197],"under":[198],"fixed":[200],"window":[201],"using":[202],"sum-of-pairs":[204],"method":[205],"provides":[207],"profiles":[209,227],"each":[211],"set":[212],"sequences.":[215],"The":[216],"can":[218,265],"visually":[219],"either":[223],"graphic":[225],"plain":[230],"text":[231],"format":[232],"nucleotides":[236],"along":[237],"annotations":[240],"information.":[241],"We":[242],"illustrate":[243],"capabilities":[245],"our":[247],"system":[249],"comparing":[251],"MLAGAN,":[256],"MAVID,":[257],"MULTIZ,":[259],"respectively.":[260],"CONCLUSION:":[261],"With":[262],"users":[264],"use":[266],"own":[268],"data":[269],"various":[273],"select":[280],"suitable":[283],"one":[284],"perform":[286],"analysis.":[294]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
