{"id":"https://openalex.org/W2152462227","doi":"https://doi.org/10.1186/1471-2105-6-s4-s19","title":"High performance workflow implementation for protein surface characterization using grid technology","display_name":"High performance workflow implementation for protein surface characterization using grid technology","publication_year":2005,"publication_date":"2005-12-01","ids":{"openalex":"https://openalex.org/W2152462227","doi":"https://doi.org/10.1186/1471-2105-6-s4-s19","mag":"2152462227","pmid":"https://pubmed.ncbi.nlm.nih.gov/16351745"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-6-s4-s19","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-s4-s19","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-S4-S19","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-S4-S19","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026770450","display_name":"Ivan Merelli","orcid":"https://orcid.org/0000-0003-3587-3680"},"institutions":[{"id":"https://openalex.org/I4210154278","display_name":"Institute of Biomedical Technologies","ror":"https://ror.org/04ehykb85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210154278","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Ivan Merelli","raw_affiliation_strings":["Istituto di Tecnologie Biomediche (ITB-CNR), via F.lli Cervi, Segrate, Milan, Italy. ivan.merelli@itb.cnr.it","Istituto di Tecnologie Biomediche (ITB \u2013 CNR), Segrate, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Istituto di Tecnologie Biomediche (ITB-CNR), via F.lli Cervi, Segrate, Milan, Italy. ivan.merelli@itb.cnr.it","institution_ids":["https://openalex.org/I4210154278"]},{"raw_affiliation_string":"Istituto di Tecnologie Biomediche (ITB \u2013 CNR), Segrate, Italy","institution_ids":["https://openalex.org/I4210154278"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064391171","display_name":"Giulia Morra","orcid":"https://orcid.org/0000-0002-9681-7845"},"institutions":[{"id":"https://openalex.org/I4210154278","display_name":"Institute of Biomedical Technologies","ror":"https://ror.org/04ehykb85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210154278","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giulia Morra","raw_affiliation_strings":["Istituto di Tecnologie Biomediche (ITB \u2013 CNR), via F.lli Cervi, Segrate, (Milano), Italy","Istituto di Tecnologie Biomediche (ITB \u2013 CNR), Segrate, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Istituto di Tecnologie Biomediche (ITB \u2013 CNR), via F.lli Cervi, Segrate, (Milano), Italy","institution_ids":["https://openalex.org/I4210154278"]},{"raw_affiliation_string":"Istituto di Tecnologie Biomediche (ITB \u2013 CNR), Segrate, Italy","institution_ids":["https://openalex.org/I4210154278"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002026919","display_name":"Daniele D\u2019Agostino","orcid":"https://orcid.org/0000-0003-2649-0071"},"institutions":[{"id":"https://openalex.org/I4210137033","display_name":"Istituto di Matematica Applicata e Tecnologie Informatiche","ror":"https://ror.org/03m0n3c07","country_code":"IT","type":"education","lineage":["https://openalex.org/I4210137033","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Daniele D'Agostino","raw_affiliation_strings":["Istituto di Matematica Applicata e Tecnologie Informatiche (IMATI \u2013 CNR), via de Marini, Genova, Italy","Istituto di Matematica Applicata e Tecnologie Informatiche (IMATI \u2013 CNR), Genova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Istituto di Matematica Applicata e Tecnologie Informatiche (IMATI \u2013 CNR), via de Marini, Genova, Italy","institution_ids":["https://openalex.org/I4210137033"]},{"raw_affiliation_string":"Istituto di Matematica Applicata e Tecnologie Informatiche (IMATI \u2013 CNR), Genova, Italy","institution_ids":["https://openalex.org/I4210137033"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085564700","display_name":"Andrea Clematis","orcid":"https://orcid.org/0000-0002-0748-8876"},"institutions":[{"id":"https://openalex.org/I4210137033","display_name":"Istituto di Matematica Applicata e Tecnologie Informatiche","ror":"https://ror.org/03m0n3c07","country_code":"IT","type":"education","lineage":["https://openalex.org/I4210137033","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Andrea Clematis","raw_affiliation_strings":["Istituto di Matematica Applicata e Tecnologie Informatiche (IMATI \u2013 CNR), via de Marini, Genova, Italy","Istituto di Matematica Applicata e Tecnologie Informatiche (IMATI \u2013 CNR), Genova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Istituto di Matematica Applicata e Tecnologie Informatiche (IMATI \u2013 CNR), via de Marini, Genova, Italy","institution_ids":["https://openalex.org/I4210137033"]},{"raw_affiliation_string":"Istituto di Matematica Applicata e Tecnologie Informatiche (IMATI \u2013 CNR), Genova, Italy","institution_ids":["https://openalex.org/I4210137033"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088629765","display_name":"Luciano Milanesi","orcid":"https://orcid.org/0000-0002-1201-3939"},"institutions":[{"id":"https://openalex.org/I4210154278","display_name":"Institute of Biomedical Technologies","ror":"https://ror.org/04ehykb85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210154278","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Luciano Milanesi","raw_affiliation_strings":["Istituto di Tecnologie Biomediche (ITB \u2013 CNR), via F.lli Cervi, Segrate, (Milano), Italy","Istituto di Tecnologie Biomediche (ITB \u2013 CNR), Segrate, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Istituto di Tecnologie Biomediche (ITB \u2013 CNR), via F.lli Cervi, Segrate, (Milano), Italy","institution_ids":["https://openalex.org/I4210154278"]},{"raw_affiliation_string":"Istituto di Tecnologie Biomediche (ITB \u2013 CNR), Segrate, Italy","institution_ids":["https://openalex.org/I4210154278"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5088629765"],"corresponding_institution_ids":["https://openalex.org/I4210154278"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.6945,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.82308733,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"6","issue":"S4","first_page":"S19","last_page":"S19"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.4657999873161316,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.4657999873161316,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.2872999906539917,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.0333000011742115,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8401480913162231},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5860088467597961},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.5289105176925659},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.43885236978530884},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3823803961277008},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36254483461380005},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32148268818855286},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.31423237919807434},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2072531282901764},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10966962575912476},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07583990693092346}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8401480913162231},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5860088467597961},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.5289105176925659},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.43885236978530884},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3823803961277008},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36254483461380005},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32148268818855286},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.31423237919807434},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2072531282901764},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10966962575912476},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07583990693092346},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003199","descriptor_name":"Computer Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003199","descriptor_name":"Computer Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003199","descriptor_name":"Computer Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003205","descriptor_name":"Computing Methodologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003205","descriptor_name":"Computing Methodologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003205","descriptor_name":"Computing Methodologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-6-s4-s19","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-s4-s19","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-S4-S19","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16351745","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16351745","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:6e2e5c43b1b544339932c302fb46835f","is_oa":false,"landing_page_url":"https://doaj.org/article/6e2e5c43b1b544339932c302fb46835f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 6, Iss Suppl 4, p S19 (2005)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:459903","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC1866389","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1866389","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1866389","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-6-s4-s19","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-s4-s19","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-S4-S19","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.6499999761581421}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321873","display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca","ror":"https://ror.org/0166hxq48"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2152462227.pdf","grobid_xml":"https://content.openalex.org/works/W2152462227.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1492522106","https://openalex.org/W1602734977","https://openalex.org/W1614421135","https://openalex.org/W1970654380","https://openalex.org/W1973578915","https://openalex.org/W1992178984","https://openalex.org/W2002180966","https://openalex.org/W2012531419","https://openalex.org/W2021312899","https://openalex.org/W2045088722","https://openalex.org/W2048792959","https://openalex.org/W2062296203","https://openalex.org/W2097555181","https://openalex.org/W2108401170","https://openalex.org/W2111996486","https://openalex.org/W2154010459","https://openalex.org/W2157529693","https://openalex.org/W2160690759","https://openalex.org/W2166187656"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W188202134","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W4255934811","https://openalex.org/W2465382974","https://openalex.org/W2010229520"],"abstract_inverted_index":{"BACKGROUND:":[0],"This":[1],"study":[2],"concerns":[3],"the":[4,23,27,31,35,46,85,90,96,100,105,144,157,161,180,187,196,200,205,210,214,217,222,229,233],"development":[5],"of":[6,18,26,34,40,55,81,87,112,141,186,213],"a":[7,53,110,122,151],"high":[8],"performance":[9],"workflow":[10,42,102,134,181,206],"that,":[11],"using":[12],"grid":[13,65,177],"technology,":[14],"correlates":[15],"different":[16,64,101,197,211],"kinds":[17],"Bioinformatics":[19,73,130],"data,":[20],"starting":[21],"from":[22],"base":[24],"pairs":[25],"nucleotide":[28],"sequence":[29],"to":[30,77,89,137,160,171,176,193],"exposed":[32,220],"residues":[33],"protein":[36,223],"surface.":[37],"The":[38,132],"implementation":[39],"this":[41,173],"is":[43,52,135,191],"based":[44],"on":[45,221],"Italian":[47],"Grid.it":[48],"project":[49],"infrastructure,":[50],"that":[51],"network":[54],"several":[56],"computational":[57,97],"resources":[58,88],"and":[59,143],"storage":[60],"facilities":[61],"distributed":[62],"at":[63],"sites.":[66],"METHODS:":[67],"Workflows":[68],"are":[69],"very":[70],"common":[71],"in":[72,129,232],"because":[74],"they":[75],"allow":[76],"process":[78],"large":[79],"quantities":[80],"data":[82,142,201,230],"by":[83,184],"delegating":[84],"management":[86],"information":[91],"streaming.":[92],"Grid":[93,116],"technology":[94,117,174],"optimizes":[95],"load":[98],"during":[99],"steps,":[103],"dividing":[104],"more":[106],"expensive":[107],"tasks":[108],"into":[109,150],"set":[111],"small":[113],"jobs.":[114],"RESULTS:":[115],"allows":[118],"efficient":[119],"database":[120],"management,":[121],"crucial":[123],"problem":[124],"for":[125],"obtaining":[126],"good":[127],"results":[128,145,155],"applications.":[131],"proposed":[133],"implemented":[136],"integrate":[138],"huge":[139],"amounts":[140],"themselves":[146],"must":[147],"be":[148,226],"stored":[149],"relational":[152],"database,":[153],"which":[154],"as":[156],"added":[158],"value":[159],"global":[162],"knowledge.":[163],"CONCLUSION:":[164],"A":[165],"web":[166],"interface":[167],"has":[168,182,207],"been":[169,208],"developed":[170],"make":[172],"accessible":[175],"users.":[178],"Once":[179],"started,":[183],"means":[185],"simplified":[188],"interface,":[189],"it":[190],"possible":[192],"follow":[194],"all":[195],"steps":[198],"throughout":[199],"processing.":[202],"Eventually,":[203],"when":[204],"terminated,":[209],"features":[212],"protein,":[215],"like":[216],"amino":[218],"acids":[219],"surface,":[224],"can":[225],"compared":[227],"with":[228],"present":[231],"output":[234],"database.":[235]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
