{"id":"https://openalex.org/W2002711687","doi":"https://doi.org/10.1186/1471-2105-6-s3-s7","title":"Computational inference of regulator activity in a single input motif from gene expression data","display_name":"Computational inference of regulator activity in a single input motif from gene expression data","publication_year":2005,"publication_date":"2005-09-21","ids":{"openalex":"https://openalex.org/W2002711687","doi":"https://doi.org/10.1186/1471-2105-6-s3-s7","mag":"2002711687"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-6-s3-s7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-s3-s7","pdf_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-6-S3-S7.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-6-S3-S7.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081767603","display_name":"Raya Khanin","orcid":null},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Raya Khanin","raw_affiliation_strings":["Department of Statistics, 15 University Gardens, University of Glasgow, Glasgow, G12 8QQ, UK","Department of Statistics, 15 University Gardens, University of Glasgow, Glasgow, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics, 15 University Gardens, University of Glasgow, Glasgow, G12 8QQ, UK","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"Department of Statistics, 15 University Gardens, University of Glasgow, Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048072558","display_name":"Veronica Vinciotti","orcid":"https://orcid.org/0000-0002-2625-7977"},"institutions":[{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Veronica Vinciotti","raw_affiliation_strings":["School of Information Systems, Computing and Mathematics, Brunel University, Uxbridge, UB8 3PH, UK","School of Information Systems, Computing & Mathematics , Brunel University , Uxbridge , UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Systems, Computing and Mathematics, Brunel University, Uxbridge, UB8 3PH, UK","institution_ids":["https://openalex.org/I59433898"]},{"raw_affiliation_string":"School of Information Systems, Computing & Mathematics , Brunel University , Uxbridge , UK","institution_ids":["https://openalex.org/I59433898"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004395628","display_name":"Vassilis Mersinias","orcid":null},"institutions":[{"id":"https://openalex.org/I28290843","display_name":"University of Surrey","ror":"https://ror.org/00ks66431","country_code":"GB","type":"education","lineage":["https://openalex.org/I28290843"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Vassilis Mersinias","raw_affiliation_strings":["School of Biomedical and Molecular Sciences, University of Surrey, Guildford, GU2 7XH, UK","School of Biomedical and Molecular Sciences, University of Surrey, Guildford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical and Molecular Sciences, University of Surrey, Guildford, GU2 7XH, UK","institution_ids":["https://openalex.org/I28290843"]},{"raw_affiliation_string":"School of Biomedical and Molecular Sciences, University of Surrey, Guildford, UK","institution_ids":["https://openalex.org/I28290843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002779798","display_name":"Colin P. Smith","orcid":"https://orcid.org/0000-0001-9042-2263"},"institutions":[{"id":"https://openalex.org/I28290843","display_name":"University of Surrey","ror":"https://ror.org/00ks66431","country_code":"GB","type":"education","lineage":["https://openalex.org/I28290843"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Colin Smith","raw_affiliation_strings":["School of Biomedical and Molecular Sciences, University of Surrey, Guildford, GU2 7XH, UK","School of Biomedical and Molecular Sciences, University of Surrey, Guildford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical and Molecular Sciences, University of Surrey, Guildford, GU2 7XH, UK","institution_ids":["https://openalex.org/I28290843"]},{"raw_affiliation_string":"School of Biomedical and Molecular Sciences, University of Surrey, Guildford, UK","institution_ids":["https://openalex.org/I28290843"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068403840","display_name":"Ernst C. Wit","orcid":"https://orcid.org/0000-0002-3671-9610"},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ernst Wit","raw_affiliation_strings":["Department of Statistics, 15 University Gardens, University of Glasgow, Glasgow, G12 8QQ, UK","Department of Statistics, 15 University Gardens, University of Glasgow, Glasgow, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics, 15 University Gardens, University of Glasgow, Glasgow, G12 8QQ, UK","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"Department of Statistics, 15 University Gardens, University of Glasgow, Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5081767603"],"corresponding_institution_ids":["https://openalex.org/I7882870"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.0,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.07785707,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"6","issue":"S3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9769999980926514,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9769999980926514,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9370999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/regulator","display_name":"Regulator","score":0.7190685272216797},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.7133779525756836},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6817383766174316},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6570363640785217},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.615852952003479},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.5456030368804932},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.49316781759262085},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.48005375266075134},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.4771125614643097},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.4758598208427429},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.43345656991004944},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3429241180419922},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33008241653442383},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18970587849617004}],"concepts":[{"id":"https://openalex.org/C6929976","wikidata":"https://www.wikidata.org/wiki/Q3771881","display_name":"Regulator","level":3,"score":0.7190685272216797},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.7133779525756836},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6817383766174316},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6570363640785217},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.615852952003479},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.5456030368804932},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.49316781759262085},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.48005375266075134},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.4771125614643097},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.4758598208427429},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.43345656991004944},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3429241180419922},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33008241653442383},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18970587849617004},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-6-s3-s7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-s3-s7","pdf_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-6-S3-S7.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:bura.brunel.ac.uk:2438/9241","is_oa":false,"landing_page_url":"http://bura.brunel.ac.uk/handle/2438/9241","pdf_url":null,"source":{"id":"https://openalex.org/S4306401473","display_name":"Brunel University Research Archive (BURA) (Brunel University London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I59433898","host_organization_name":"Brunel University of London","host_organization_lineage":["https://openalex.org/I59433898"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioSysBio: Bioinformatics and Systems Biology Conference","raw_type":"Article"},{"id":"pmh:oai:pure.rug.nl:openaire_cris_publications/14f2e401-cc65-4a9f-834d-d244e1d5e486","is_oa":true,"landing_page_url":"https://research.rug.nl/en/publications/14f2e401-cc65-4a9f-834d-d244e1d5e486","pdf_url":null,"source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Khanin , R , Vinciotti , V , Mersinias , V , Smith , C &amp; Wit , E 2005 , ' Computational inference of regulator activity in a single input motif from gene expression data ' , Bmc Bioinformatics , vol. 6 Suppl 3 , no. 57 . https://doi.org/10.1186/1471-2105-6-S3-S7","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-6-s3-s7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-s3-s7","pdf_url":"https://link.springer.com/content/pdf/10.1186/1471-2105-6-S3-S7.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2002711687.pdf","grobid_xml":"https://content.openalex.org/works/W2002711687.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2069695727","https://openalex.org/W1996185163","https://openalex.org/W2084813257","https://openalex.org/W2045929470","https://openalex.org/W2081127504","https://openalex.org/W2122223946","https://openalex.org/W4233500668","https://openalex.org/W1974145978","https://openalex.org/W1977867163","https://openalex.org/W2393426762"],"abstract_inverted_index":null,"counts_by_year":[{"year":2018,"cited_by_count":2}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
