{"id":"https://openalex.org/W2168850637","doi":"https://doi.org/10.1186/1471-2105-6-s2-s9","title":"CLPM: A Cross-Linked Peptide Mapping Algorithm for Mass Spectrometric Analysis","display_name":"CLPM: A Cross-Linked Peptide Mapping Algorithm for Mass Spectrometric Analysis","publication_year":2005,"publication_date":"2005-07-01","ids":{"openalex":"https://openalex.org/W2168850637","doi":"https://doi.org/10.1186/1471-2105-6-s2-s9","mag":"2168850637","pmid":"https://pubmed.ncbi.nlm.nih.gov/16026606"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-6-s2-s9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-s2-s9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-S2-S9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-S2-S9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103079210","display_name":"Yong Tang","orcid":"https://orcid.org/0009-0005-2021-0093"},"institutions":[{"id":"https://openalex.org/I102401767","display_name":"University of Arkansas at Little Rock","ror":"https://ror.org/04fttyv97","country_code":"US","type":"education","lineage":["https://openalex.org/I102401767"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yong Tang","raw_affiliation_strings":["Department of Applied Science, University of Arkansas at Little Rock, Little Rock, Arkansas 72204, USA. YxTang2@UALR.edu","Department of Applied Science, University of Arkansas at Little Rock, Little Rock, Arkansas, 72204, USA"],"affiliations":[{"raw_affiliation_string":"Department of Applied Science, University of Arkansas at Little Rock, Little Rock, Arkansas 72204, USA. YxTang2@UALR.edu","institution_ids":["https://openalex.org/I102401767"]},{"raw_affiliation_string":"Department of Applied Science, University of Arkansas at Little Rock, Little Rock, Arkansas, 72204, USA","institution_ids":["https://openalex.org/I102401767"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065987766","display_name":"Yingfeng Chen","orcid":"https://orcid.org/0000-0002-7995-2113"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yingfeng Chen","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, Arkansas, 72205, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, Arkansas, 72205, USA","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046034812","display_name":"Cheryl F. Lichti","orcid":"https://orcid.org/0000-0003-4099-4954"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cheryl F Lichti","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, Arkansas, 72205, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, Arkansas, 72205, USA","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077421127","display_name":"Roger A. Hall","orcid":null},"institutions":[{"id":"https://openalex.org/I102401767","display_name":"University of Arkansas at Little Rock","ror":"https://ror.org/04fttyv97","country_code":"US","type":"education","lineage":["https://openalex.org/I102401767"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Roger A Hall","raw_affiliation_strings":["MidSouth Bioinformatics Center, University of Arkansas at Little Rock, Little Rock, Arkansas, 72204, USA"],"affiliations":[{"raw_affiliation_string":"MidSouth Bioinformatics Center, University of Arkansas at Little Rock, Little Rock, Arkansas, 72204, USA","institution_ids":["https://openalex.org/I102401767"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008476359","display_name":"Kevin D. Raney","orcid":"https://orcid.org/0000-0002-7290-0206"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kevin D Raney","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, Arkansas, 72205, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, Arkansas, 72205, USA","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049165980","display_name":"Steven Jennings","orcid":null},"institutions":[{"id":"https://openalex.org/I102401767","display_name":"University of Arkansas at Little Rock","ror":"https://ror.org/04fttyv97","country_code":"US","type":"education","lineage":["https://openalex.org/I102401767"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven F Jennings","raw_affiliation_strings":["Department of Applied Science, University of Arkansas at Little Rock, Little Rock, Arkansas, 72204, USA","MidSouth Bioinformatics Center, University of Arkansas at Little Rock, Little Rock, Arkansas, 72204, USA"],"affiliations":[{"raw_affiliation_string":"Department of Applied Science, University of Arkansas at Little Rock, Little Rock, Arkansas, 72204, USA","institution_ids":["https://openalex.org/I102401767"]},{"raw_affiliation_string":"MidSouth Bioinformatics Center, University of Arkansas at Little Rock, Little Rock, Arkansas, 72204, USA","institution_ids":["https://openalex.org/I102401767"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5103079210"],"corresponding_institution_ids":["https://openalex.org/I102401767"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.0611,"has_fulltext":true,"cited_by_count":40,"citation_normalized_percentile":{"value":0.86820679,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"6","issue":"S2","first_page":"S9","last_page":"S9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5023903846740723},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.4852716624736786},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4655137062072754},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.39890438318252563},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.34854140877723694},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.18333590030670166}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5023903846740723},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.4852716624736786},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4655137062072754},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.39890438318252563},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34854140877723694},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.18333590030670166}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010449","descriptor_name":"Peptide Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010449","descriptor_name":"Peptide Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010449","descriptor_name":"Peptide Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019032","descriptor_name":"Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019032","descriptor_name":"Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019032","descriptor_name":"Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-6-s2-s9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-s2-s9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-S2-S9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16026606","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16026606","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:1637035","is_oa":true,"landing_page_url":"http://doi.org/10.1186/1471-2105-6-S2-S9","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-6-s2-s9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-s2-s9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-S2-S9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2294964640","display_name":null,"funder_award_id":"50 and","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5548406835","display_name":null,"funder_award_id":"P20 RR-16460","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7231000722","display_name":null,"funder_award_id":"P20 RR-16460","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"}],"funders":[{"id":"https://openalex.org/F4320319804","display_name":"Badan Riset dan Inovasi Nasional","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2168850637.pdf","grobid_xml":"https://content.openalex.org/works/W2168850637.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1582195464","https://openalex.org/W1585817997","https://openalex.org/W1963704941","https://openalex.org/W1978642300","https://openalex.org/W1979357311","https://openalex.org/W1979692315","https://openalex.org/W1980885258","https://openalex.org/W1981593008","https://openalex.org/W1985219728","https://openalex.org/W1992180542","https://openalex.org/W1995050941","https://openalex.org/W1997874752","https://openalex.org/W1998857178","https://openalex.org/W1999211388","https://openalex.org/W2003441999","https://openalex.org/W2012534919","https://openalex.org/W2014288761","https://openalex.org/W2016441306","https://openalex.org/W2028529543","https://openalex.org/W2029318495","https://openalex.org/W2030928323","https://openalex.org/W2031315451","https://openalex.org/W2037036397","https://openalex.org/W2050310724","https://openalex.org/W2059651000","https://openalex.org/W2069790213","https://openalex.org/W2073035613","https://openalex.org/W2075122404","https://openalex.org/W2088248172","https://openalex.org/W2092233154","https://openalex.org/W2094141960","https://openalex.org/W2101522386","https://openalex.org/W2113217091","https://openalex.org/W2124713565","https://openalex.org/W2124961362","https://openalex.org/W2125572210","https://openalex.org/W2131271276","https://openalex.org/W2150999725","https://openalex.org/W2161574105","https://openalex.org/W2163615153","https://openalex.org/W2171345795","https://openalex.org/W2465178199"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W2117258802"],"abstract_inverted_index":{"Identifying":[0],"peptides":[1],"by":[2],"their":[3],"masses":[4],"can":[5,42],"be":[6],"an":[7],"efficient":[8],"starting":[9],"point":[10],"for":[11],"direct":[12],"sequence":[13],"confirmation.":[14],"The":[15],"CLPM":[16],"algorithm":[17],"provides":[18],"a":[19],"powerful":[20],"tool":[21],"in":[22,28],"identifying":[23],"these":[24,48],"potential":[25],"interaction":[26,50],"sites":[27],"combination":[29],"with":[30],"chemical":[31],"crosslinking":[32],"and":[33],"mass":[34],"spectrometry.":[35],"Through":[36],"this":[37],"cost-effective":[38],"approach,":[39],"subsequent":[40],"efforts":[41],"quickly":[43],"focus":[44],"attention":[45],"on":[46],"investigating":[47],"specific":[49],"sites.":[51]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
