{"id":"https://openalex.org/W1970863518","doi":"https://doi.org/10.1186/1471-2105-6-s1-s23","title":"Data-poor categorization and passage retrieval for Gene Ontology Annotation in Swiss-Prot","display_name":"Data-poor categorization and passage retrieval for Gene Ontology Annotation in Swiss-Prot","publication_year":2005,"publication_date":"2005-05-01","ids":{"openalex":"https://openalex.org/W1970863518","doi":"https://doi.org/10.1186/1471-2105-6-s1-s23","mag":"1970863518","pmid":"https://pubmed.ncbi.nlm.nih.gov/15960836"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-6-s1-s23","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-s1-s23","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-S1-S23","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-S1-S23","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018379596","display_name":"Fr\u00e9d\u00e9ric Ehrler","orcid":"https://orcid.org/0000-0001-9734-3242"},"institutions":[{"id":"https://openalex.org/I114457229","display_name":"University of Geneva","ror":"https://ror.org/01swzsf04","country_code":"CH","type":"education","lineage":["https://openalex.org/I114457229"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Fr\u00e9d\u00e9ric Ehrler","raw_affiliation_strings":["Artificial Intelligence Laboratory, University of Geneva, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Artificial Intelligence Laboratory, University of Geneva, Geneva, Switzerland","institution_ids":["https://openalex.org/I114457229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002030006","display_name":"Antoine Geissb\u00fchler","orcid":"https://orcid.org/0000-0001-5039-3373"},"institutions":[{"id":"https://openalex.org/I4210106256","display_name":"University Hospital of Geneva","ror":"https://ror.org/01m1pv723","country_code":"CH","type":"healthcare","lineage":["https://openalex.org/I4210106256"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Antoine Geissb\u00fchler","raw_affiliation_strings":["Medical Informatics Service, University Hospitals of Geneva, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Informatics Service, University Hospitals of Geneva, Geneva, Switzerland","institution_ids":["https://openalex.org/I4210106256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077681143","display_name":"Antonio Jimeno Yepes","orcid":"https://orcid.org/0000-0002-6581-094X"},"institutions":[{"id":"https://openalex.org/I114457229","display_name":"University of Geneva","ror":"https://ror.org/01swzsf04","country_code":"CH","type":"education","lineage":["https://openalex.org/I114457229"]},{"id":"https://openalex.org/I67311998","display_name":"European Organization for Nuclear Research","ror":"https://ror.org/01ggx4157","country_code":"CH","type":"facility","lineage":["https://openalex.org/I67311998"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Antonio Jimeno","raw_affiliation_strings":["Artificial Intelligence Laboratory, University of Geneva, Geneva, Switzerland","CERN, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Artificial Intelligence Laboratory, University of Geneva, Geneva, Switzerland","institution_ids":["https://openalex.org/I114457229"]},{"raw_affiliation_string":"CERN, Geneva, Switzerland","institution_ids":["https://openalex.org/I67311998"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042384742","display_name":"Patrick Ruch","orcid":"https://orcid.org/0000-0002-3374-2962"},"institutions":[{"id":"https://openalex.org/I4210106256","display_name":"University Hospital of Geneva","ror":"https://ror.org/01m1pv723","country_code":"CH","type":"healthcare","lineage":["https://openalex.org/I4210106256"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Patrick Ruch","raw_affiliation_strings":["Medical Informatics Service, University Hospitals of Geneva, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Informatics Service, University Hospitals of Geneva, Geneva, Switzerland","institution_ids":["https://openalex.org/I4210106256"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.2867,"has_fulltext":true,"cited_by_count":39,"citation_normalized_percentile":{"value":0.92224048,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"6","issue":"S1","first_page":"S23","last_page":"S23"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9805999994277954,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9805999994277954,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11550","display_name":"Text and Document Classification Technologies","score":0.00419999985024333,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.002899999963119626,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7706927061080933},{"id":"https://openalex.org/keywords/categorization","display_name":"Categorization","score":0.6862702369689941},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6234514117240906},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5994991064071655},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5282002091407776},{"id":"https://openalex.org/keywords/sentence","display_name":"Sentence","score":0.5197110176086426},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.5012199878692627},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4751460552215576},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.43121740221977234},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.4239603281021118}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7706927061080933},{"id":"https://openalex.org/C94124525","wikidata":"https://www.wikidata.org/wiki/Q912550","display_name":"Categorization","level":2,"score":0.6862702369689941},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6234514117240906},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5994991064071655},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5282002091407776},{"id":"https://openalex.org/C2777530160","wikidata":"https://www.wikidata.org/wiki/Q41796","display_name":"Sentence","level":2,"score":0.5197110176086426},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.5012199878692627},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4751460552215576},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.43121740221977234},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.4239603281021118},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-6-s1-s23","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-s1-s23","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-S1-S23","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15960836","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15960836","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:jupiter.its.unimelb.edu.au:11343/259050","is_oa":true,"landing_page_url":"http://hdl.handle.net/11343/259050","pdf_url":"http://hdl.handle.net/11343/259050","source":{"id":"https://openalex.org/S4377196259","display_name":"Minerva Access (University of Melbourne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165779595","host_organization_name":"The University of Melbourne","host_organization_lineage":["https://openalex.org/I165779595"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:b98cc82e184e43459fe6a04b8b8a8ba5","is_oa":false,"landing_page_url":"https://doaj.org/article/b98cc82e184e43459fe6a04b8b8a8ba5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 6, Iss Suppl 1, p S23 (2005)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1869016","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1869016","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-6-s1-s23","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-s1-s23","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-S1-S23","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6499999761581421,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320313288","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1970863518.pdf","grobid_xml":"https://content.openalex.org/works/W1970863518.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W27344939","https://openalex.org/W69295931","https://openalex.org/W121221959","https://openalex.org/W143317831","https://openalex.org/W296127572","https://openalex.org/W1482504747","https://openalex.org/W1534995736","https://openalex.org/W1550206324","https://openalex.org/W1567882785","https://openalex.org/W1576520375","https://openalex.org/W1604938182","https://openalex.org/W1646278814","https://openalex.org/W1760082936","https://openalex.org/W1907380269","https://openalex.org/W1956559956","https://openalex.org/W1968518252","https://openalex.org/W1970026646","https://openalex.org/W1978280458","https://openalex.org/W1984291951","https://openalex.org/W1989568037","https://openalex.org/W1994610196","https://openalex.org/W2000569744","https://openalex.org/W2003144438","https://openalex.org/W2018560257","https://openalex.org/W2020695518","https://openalex.org/W2027875450","https://openalex.org/W2044602212","https://openalex.org/W2053463056","https://openalex.org/W2066066594","https://openalex.org/W2072099238","https://openalex.org/W2092616252","https://openalex.org/W2092795373","https://openalex.org/W2094934653","https://openalex.org/W2103017472","https://openalex.org/W2105157020","https://openalex.org/W2111640074","https://openalex.org/W2152183901","https://openalex.org/W2159053585","https://openalex.org/W2170339378","https://openalex.org/W2325227998","https://openalex.org/W2340777861","https://openalex.org/W2413372017","https://openalex.org/W2915677652","https://openalex.org/W4211088184","https://openalex.org/W4213149192","https://openalex.org/W4234200495","https://openalex.org/W4238183243","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2165912799","https://openalex.org/W2735662278","https://openalex.org/W2361861616","https://openalex.org/W2382615723","https://openalex.org/W4311804456","https://openalex.org/W1987484445","https://openalex.org/W2623658258","https://openalex.org/W2143413548","https://openalex.org/W1969219540","https://openalex.org/W2405355225"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1],"the":[2,5,43,69,82,87,101,104,117,137,190,204,213,230,260],"context":[3],"of":[4,37,61,64,103,131,179,217,232,268],"BioCreative":[6],"competition,":[7],"where":[8],"training":[9,274],"data":[10,275],"were":[11,159,249,284],"very":[12,242],"sparse,":[13],"we":[14,194,239],"investigated":[15],"two":[16],"complementary":[17],"tasks:":[18],"1)":[19],"given":[20,48],"a":[21,25,27,33,38,49,53,56,62,76,94,128,227,265,280],"Swiss-Prot":[22,50,88],"triplet,":[23],"containing":[24,52],"protein,":[26],"GO":[28,44,83,98],"(Gene":[29],"Ontology)":[30],"term":[31,99,172],"and":[32,55,81,100,119,140,147,234],"relevant":[34,57,174],"article,":[35,58],"extraction":[36,270],"short":[39],"passage":[40,145],"that":[41,177,203,253,259],"justifies":[42],"category":[45,84],"assignment;":[46],"2)":[47],"pair,":[51],"protein":[54],"automatic":[59],"assignment":[60],"set":[63],"categories.":[65],"METHODS:":[66],"Sentence":[67],"is":[68,173],"basic":[70],"retrieval":[71,146,214,233],"unit.":[72],"Our":[73,134],"classifier":[74],"computes":[75,93],"distance":[77,95],"between":[78,96],"each":[79,97],"sentence":[80],"provided":[85],"with":[86,183],"entry.":[89],"The":[90,169],"Text":[91],"Categorizer":[92],"text":[102,148,156,166,294],"article.":[105],"Evaluations":[106],"are":[107,276,288],"reported":[108],"both":[109,143],"based":[110,120,211],"on":[111,121,212],"annotator":[112],"judgements":[113],"as":[114,150,189],"established":[115],"by":[116,152],"competition":[118],"mean":[122],"average":[123],"precision":[124,141],"measures":[125],"computed":[126],"using":[127],"curated":[129],"sample":[130],"Swiss-Prot.":[132],"RESULTS:":[133],"system":[135],"achieved":[136,195,241],"best":[138],"recall":[139],"combination":[142,231],"for":[144,297],"categorization":[149,157,167,182],"evaluated":[151],"official":[153],"evaluators.":[154],"However,":[155,278],"results":[158,257,283],"far":[160],"below":[161],"those":[162],"in":[163,175,208],"other":[164,184],"data-poor":[165],"experiments":[168],"top":[170],"proposed":[171],"less":[176,251],"20%":[178],"cases,":[180],"while":[181],"biomedical":[185],"controlled":[186],"vocabulary,":[187],"such":[188],"Medical":[191],"Subject":[192],"Headings,":[193],"more":[196],"than":[197],"90%":[198],"precision.":[199],"We":[200],"also":[201],"observe":[202],"scoring":[205],"methods":[206,238],"used":[207],"our":[209,218,247],"experiments,":[210],"status":[215],"value":[216],"engines,":[219],"exhibits":[220],"effective":[221,252],"confidence":[222],"estimation":[223],"capabilities.":[224],"CONCLUSION:":[225],"From":[226],"comparative":[228],"perspective,":[229,282],"natural":[235],"language":[236],"processing":[237],"designed,":[240],"competitive":[243],"performances.":[244],"Largely":[245],"data-independent,":[246],"systems":[248],"no":[250],"data-intensive":[254],"approaches.":[255],"These":[256],"suggests":[258],"overall":[261],"strategy":[262],"could":[263],"benefit":[264],"large":[266],"class":[267],"information":[269],"tasks,":[271],"especially":[272],"when":[273],"missing.":[277],"from":[279],"user":[281],"disappointing.":[285],"Further":[286],"investigations":[287],"needed":[289],"to":[290],"design":[291],"applicable":[292],"end-user":[293],"mining":[295],"tools":[296],"biologists.":[298]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-18T10:00:31.954636","created_date":"2025-10-10T00:00:00"}
