{"id":"https://openalex.org/W1976015112","doi":"https://doi.org/10.1186/1471-2105-6-s1-s19","title":"A sentence sliding window approach to extract protein annotations from biomedical articles","display_name":"A sentence sliding window approach to extract protein annotations from biomedical articles","publication_year":2005,"publication_date":"2005-05-01","ids":{"openalex":"https://openalex.org/W1976015112","doi":"https://doi.org/10.1186/1471-2105-6-s1-s19","mag":"1976015112","pmid":"https://pubmed.ncbi.nlm.nih.gov/15960831"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-6-s1-s19","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-s1-s19","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-S1-S19","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-S1-S19","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007203127","display_name":"Martin Krallinger","orcid":"https://orcid.org/0000-0002-2646-8782"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Martin Krallinger","raw_affiliation_strings":["Protein Design Group, National Center of Biotechnology, CNB-CSIC, Cantoblanco, E-28049 Madrid, Spain. martink@cnb.uam.es","Protein Design Group, National Center of Biotechnology, CNB-CSIC, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Protein Design Group, National Center of Biotechnology, CNB-CSIC, Cantoblanco, E-28049 Madrid, Spain. martink@cnb.uam.es","institution_ids":["https://openalex.org/I4210104776"]},{"raw_affiliation_string":"Protein Design Group, National Center of Biotechnology, CNB-CSIC, Madrid, Spain","institution_ids":["https://openalex.org/I134820265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078261758","display_name":"Mar\u00eda Alejandra Barajas Padr\u00f3n","orcid":null},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Maria Padron","raw_affiliation_strings":["Protein Design Group, National Center of Biotechnology, CNB-CSIC, Cantoblanco, E-28049, Madrid, Spain","Protein Design Group, National Center of Biotechnology, CNB-CSIC, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Protein Design Group, National Center of Biotechnology, CNB-CSIC, Cantoblanco, E-28049, Madrid, Spain","institution_ids":["https://openalex.org/I4210104776"]},{"raw_affiliation_string":"Protein Design Group, National Center of Biotechnology, CNB-CSIC, Madrid, Spain","institution_ids":["https://openalex.org/I134820265"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015217651","display_name":"Alfonso Valencia","orcid":"https://orcid.org/0000-0002-8937-6789"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Alfonso Valencia","raw_affiliation_strings":["Protein Design Group, National Center of Biotechnology, CNB-CSIC, Cantoblanco, E-28049, Madrid, Spain","Protein Design Group, National Center of Biotechnology, CNB-CSIC, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Protein Design Group, National Center of Biotechnology, CNB-CSIC, Cantoblanco, E-28049, Madrid, Spain","institution_ids":["https://openalex.org/I4210104776"]},{"raw_affiliation_string":"Protein Design Group, National Center of Biotechnology, CNB-CSIC, Madrid, Spain","institution_ids":["https://openalex.org/I134820265"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5007203127","https://openalex.org/A5015217651"],"corresponding_institution_ids":["https://openalex.org/I134820265","https://openalex.org/I4210104776"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2790},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2790},"fwci":1.4237,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.79069411,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"6","issue":"S1","first_page":"S19","last_page":"S19"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0007999999797903001,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.0005000000237487257,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.7889357805252075},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.784953236579895},{"id":"https://openalex.org/keywords/sentence","display_name":"Sentence","score":0.6801072359085083},{"id":"https://openalex.org/keywords/sliding-window-protocol","display_name":"Sliding window protocol","score":0.6769192218780518},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6742792129516602},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6240310668945312},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5934258699417114},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.5606701374053955},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5296140909194946},{"id":"https://openalex.org/keywords/contest","display_name":"CONTEST","score":0.46682828664779663},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.42995309829711914},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4240495264530182},{"id":"https://openalex.org/keywords/window","display_name":"Window (computing)","score":0.32006144523620605},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.11271211504936218},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08212944865226746}],"concepts":[{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.7889357805252075},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.784953236579895},{"id":"https://openalex.org/C2777530160","wikidata":"https://www.wikidata.org/wiki/Q41796","display_name":"Sentence","level":2,"score":0.6801072359085083},{"id":"https://openalex.org/C102392041","wikidata":"https://www.wikidata.org/wiki/Q592860","display_name":"Sliding window protocol","level":3,"score":0.6769192218780518},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6742792129516602},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6240310668945312},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5934258699417114},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.5606701374053955},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5296140909194946},{"id":"https://openalex.org/C2777582232","wikidata":"https://www.wikidata.org/wiki/Q5013414","display_name":"CONTEST","level":2,"score":0.46682828664779663},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.42995309829711914},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4240495264530182},{"id":"https://openalex.org/C2778751112","wikidata":"https://www.wikidata.org/wiki/Q835016","display_name":"Window (computing)","level":2,"score":0.32006144523620605},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.11271211504936218},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08212944865226746},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-6-s1-s19","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-s1-s19","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-S1-S19","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15960831","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15960831","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:digital.csic.es:10261/1439","is_oa":false,"landing_page_url":"http://hdl.handle.net/10261/1439","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"http://purl.org/coar/resource_type/c_6501"},{"id":"pmh:oai:pubmedcentral.nih.gov:1869011","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1869011","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-6-s1-s19","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-s1-s19","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-S1-S19","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.8399999737739563,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321004","display_name":"\u00d6sterreichischen Akademie der Wissenschaften","ror":"https://ror.org/03anc3s24"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1976015112.pdf","grobid_xml":"https://content.openalex.org/works/W1976015112.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W79684008","https://openalex.org/W1574901103","https://openalex.org/W1983464528","https://openalex.org/W1991570251","https://openalex.org/W2004110412","https://openalex.org/W2004154913","https://openalex.org/W2018874418","https://openalex.org/W2032838501","https://openalex.org/W2056119436","https://openalex.org/W2061166439","https://openalex.org/W2091978351","https://openalex.org/W2097106271","https://openalex.org/W2098162425","https://openalex.org/W2099393019","https://openalex.org/W2103907281","https://openalex.org/W2106093878","https://openalex.org/W2107556259","https://openalex.org/W2108491719","https://openalex.org/W2114049512","https://openalex.org/W2118877284","https://openalex.org/W2123858481","https://openalex.org/W2124354935","https://openalex.org/W2134517171","https://openalex.org/W2137297622","https://openalex.org/W2142063400","https://openalex.org/W2148853951","https://openalex.org/W2152698860","https://openalex.org/W2155042162","https://openalex.org/W2159203162","https://openalex.org/W4240689716"],"related_works":["https://openalex.org/W3004288456","https://openalex.org/W4362496998","https://openalex.org/W2184397297","https://openalex.org/W3185751515","https://openalex.org/W1479703980","https://openalex.org/W2749535755","https://openalex.org/W2810079151","https://openalex.org/W1663435917","https://openalex.org/W1496929818","https://openalex.org/W2094989391"],"abstract_inverted_index":{"BACKGROUND:":[0],"Within":[1],"the":[2,27,41,44,48,59,79,131,139,154,158,164,168,176],"emerging":[3],"field":[4],"of":[5,21,37,40,43,50,62,73,81,134,141,144,167,178,198],"text":[6,82,120,124,221],"mining":[7,83,222],"and":[8,47,98,100,149,206],"statistical":[9,204],"natural":[10],"language":[11],"processing":[12],"(NLP)":[13],"applied":[14,85],"to":[15,77,86,117,214],"biomedical":[16,87,220],"articles,":[17],"a":[18,34,188,212],"broad":[19],"variety":[20],"techniques":[22,209],"have":[23],"been":[24],"developed":[25],"during":[26],"past":[28],"years.":[29],"Nevertheless,":[30],"there":[31],"is":[32,194],"still":[33],"great":[35],"ned":[36],"comparative":[38],"assessment":[39],"performance":[42,80],"proposed":[45,113],"methods":[46],"development":[49],"common":[51],"evaluation":[52],"criteria.":[53],"This":[54],"issue":[55],"was":[56,76,115,160],"addressed":[57],"by":[58],"Critical":[60],"Assessment":[61],"Text":[63],"Mining":[64],"Methods":[65],"in":[66,153,187],"Molecular":[67],"Biology":[68],"(BioCreative)":[69],"contest.":[70],"The":[71,108,196],"aim":[72],"this":[74],"contest":[75],"assess":[78],"systems":[84],"texts":[88],"including":[89],"tools":[90,101],"which":[91,102],"recognize":[92],"named":[93],"entities":[94,146],"such":[95],"as":[96],"genes":[97],"proteins,":[99,129],"automatically":[103],"extract":[104,119],"protein":[105],"annotations.":[106,137],"RESULTS:":[107],"\"sentence":[109],"sliding":[110,181],"window\"":[111],"approach":[112,200],"here":[114],"found":[116],"efficiently":[118],"fragments":[121],"from":[122],"full":[123],"articles":[125],"containing":[126],"annotations":[127,159,170],"on":[128],"providing":[130],"highest":[132],"number":[133,140],"correctly":[135],"predicted":[136],"Moreover,":[138],"correct":[142,165],"extractions":[143,166],"individual":[145],"(i.e.":[147],"proteins":[148],"GO":[150],"terms)":[151],"involved":[152],"relationships":[155],"used":[156],"for":[157,183,218],"significantly":[161],"higher":[162],"than":[163],"complete":[169],"(protein-function":[171],"relations).":[172],"CONCLUSION:":[173],"We":[174],"explored":[175],"use":[177],"averaging":[179],"sentence":[180],"windows":[182],"information":[184],"extraction,":[185],"especially":[186],"context":[189],"where":[190],"conventional":[191],"training":[192],"data":[193],"unavailable.":[195],"combination":[197],"our":[199],"with":[201],"more":[202],"refined":[203],"estimators":[205],"machine":[207],"learning":[208],"might":[210],"be":[211],"way":[213],"improve":[215],"annotation":[216],"extraction":[217],"future":[219],"applications.":[223]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
