{"id":"https://openalex.org/W2056119436","doi":"https://doi.org/10.1186/1471-2105-6-s1-s16","title":"Evaluation of BioCreAtIvE assessment of task 2","display_name":"Evaluation of BioCreAtIvE assessment of task 2","publication_year":2005,"publication_date":"2005-05-01","ids":{"openalex":"https://openalex.org/W2056119436","doi":"https://doi.org/10.1186/1471-2105-6-s1-s16","mag":"2056119436","pmid":"https://pubmed.ncbi.nlm.nih.gov/15960828"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-6-s1-s16","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-s1-s16","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-S1-S16","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-S1-S16","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017361070","display_name":"Christian Blaschke","orcid":null},"institutions":[{"id":"https://openalex.org/I4210096080","display_name":"Palobiofarma (Spain)","ror":"https://ror.org/00r0qcs48","country_code":"ES","type":"company","lineage":["https://openalex.org/I4210096080"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Christian Blaschke","raw_affiliation_strings":["Bioalma SL, Ronda de Poniente 4- 2nd floor, Tres Cantos, E-28760, Madrid, Spain. blaschke@almabioinfo.com","Bioalma SL, Tres Cantos, Spain"],"affiliations":[{"raw_affiliation_string":"Bioalma SL, Ronda de Poniente 4- 2nd floor, Tres Cantos, E-28760, Madrid, Spain. blaschke@almabioinfo.com","institution_ids":["https://openalex.org/I4210096080"]},{"raw_affiliation_string":"Bioalma SL, Tres Cantos, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077523141","display_name":"Eduardo Andr\u00e9s\u2010Le\u00f3n","orcid":"https://orcid.org/0000-0002-0621-9914"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"funder","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Eduardo Andres Leon","raw_affiliation_strings":["Protein Design Group, National Center of Biotechnology, CNB-CSIC, Cantoblanco, E-28049, Madrid, Spain","Protein Design Group, National Center of Biotechnology, CNB-CSIC, Cantoblanco, Spain"],"affiliations":[{"raw_affiliation_string":"Protein Design Group, National Center of Biotechnology, CNB-CSIC, Cantoblanco, E-28049, Madrid, Spain","institution_ids":["https://openalex.org/I4210104776"]},{"raw_affiliation_string":"Protein Design Group, National Center of Biotechnology, CNB-CSIC, Cantoblanco, Spain","institution_ids":["https://openalex.org/I134820265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007203127","display_name":"Martin Krallinger","orcid":"https://orcid.org/0000-0002-2646-8782"},"institutions":[{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]},{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"funder","lineage":["https://openalex.org/I134820265"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Martin Krallinger","raw_affiliation_strings":["Protein Design Group, National Center of Biotechnology, CNB-CSIC, Cantoblanco, E-28049, Madrid, Spain","Protein Design Group, National Center of Biotechnology, CNB-CSIC, Cantoblanco, Spain"],"affiliations":[{"raw_affiliation_string":"Protein Design Group, National Center of Biotechnology, CNB-CSIC, Cantoblanco, E-28049, Madrid, Spain","institution_ids":["https://openalex.org/I4210104776"]},{"raw_affiliation_string":"Protein Design Group, National Center of Biotechnology, CNB-CSIC, Cantoblanco, Spain","institution_ids":["https://openalex.org/I134820265"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015217651","display_name":"Alfonso Valencia","orcid":"https://orcid.org/0000-0002-8937-6789"},"institutions":[{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]},{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"funder","lineage":["https://openalex.org/I134820265"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alfonso Valencia","raw_affiliation_strings":["Protein Design Group, National Center of Biotechnology, CNB-CSIC, Cantoblanco, E-28049, Madrid, Spain","Protein Design Group, National Center of Biotechnology, CNB-CSIC, Cantoblanco, Spain"],"affiliations":[{"raw_affiliation_string":"Protein Design Group, National Center of Biotechnology, CNB-CSIC, Cantoblanco, E-28049, Madrid, Spain","institution_ids":["https://openalex.org/I4210104776"]},{"raw_affiliation_string":"Protein Design Group, National Center of Biotechnology, CNB-CSIC, Cantoblanco, Spain","institution_ids":["https://openalex.org/I134820265"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5017361070"],"corresponding_institution_ids":["https://openalex.org/I4210096080"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":7.814,"has_fulltext":true,"cited_by_count":140,"citation_normalized_percentile":{"value":0.98255985,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"6","issue":"S1","first_page":"S16","last_page":"S16"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9394000172615051,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9394000172615051,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5475663542747498},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5118018984794617},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.44929635524749756},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3656911551952362},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32979846000671387},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1914774775505066},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11887356638908386}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5475663542747498},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5118018984794617},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.44929635524749756},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3656911551952362},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32979846000671387},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1914774775505066},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11887356638908386},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-6-s1-s16","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-s1-s16","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-S1-S16","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15960828","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15960828","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:digital.csic.es:10261/3473","is_oa":false,"landing_page_url":"http://hdl.handle.net/10261/3473","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"art\u00edculo"},{"id":"pmh:oai:doaj.org/article:b538b34742a64cfd8d2180002a621ab0","is_oa":true,"landing_page_url":"https://doaj.org/article/b538b34742a64cfd8d2180002a621ab0","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 6, Iss Suppl 1, p S16 (2005)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1869008","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1869008","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-6-s1-s16","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-s1-s16","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-S1-S16","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321004","display_name":"\u00d6sterreichischen Akademie der Wissenschaften","ror":"https://ror.org/03anc3s24"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2056119436.pdf","grobid_xml":"https://content.openalex.org/works/W2056119436.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W107544894","https://openalex.org/W1491978778","https://openalex.org/W1527927437","https://openalex.org/W1969679124","https://openalex.org/W1970863518","https://openalex.org/W1976015112","https://openalex.org/W1985051351","https://openalex.org/W2018874418","https://openalex.org/W2040778567","https://openalex.org/W2056576456","https://openalex.org/W2061166439","https://openalex.org/W2091978351","https://openalex.org/W2092795373","https://openalex.org/W2097106271","https://openalex.org/W2099100406","https://openalex.org/W2108491719","https://openalex.org/W2114049512","https://openalex.org/W2117858546","https://openalex.org/W2142582455","https://openalex.org/W2159053585","https://openalex.org/W2159799774","https://openalex.org/W2161616234","https://openalex.org/W2165625418","https://openalex.org/W2166711445"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W3204019825"],"abstract_inverted_index":{"Concepts":[0],"provided":[1],"by":[2,51],"GO":[3,71,89],"are":[4,28,39,42,82],"currently":[5],"the":[6,36,47,56,62,66,70,95,120,137],"most":[7],"extended":[8],"set":[9],"of":[10,69,79,97,104,139],"terms":[11,72,90],"used":[12,83,109],"for":[13,131],"annotating":[14],"gene":[15],"products,":[16],"thus":[17],"they":[18,41],"were":[19,65,108],"explored":[20],"to":[21,30,60,84,110],"assess":[22],"how":[23],"effectively":[24],"text":[25],"mining":[26],"tools":[27],"able":[29],"extract":[31],"those":[32],"annotations":[33],"automatically.":[34],"Although":[35],"obtained":[37],"results":[38],"promising,":[40],"still":[43],"far":[44],"from":[45],"reaching":[46],"required":[48],"performance":[49],"demanded":[50],"real":[52],"world":[53],"applications.":[54],"Among":[55],"principal":[57],"difficulties":[58],"encountered":[59],"address":[61],"proposed":[63],"task,":[64],"complex":[67],"nature":[68],"and":[73,87,94,126],"protein":[74],"names":[75],"(the":[76],"large":[77],"range":[78,103],"variants":[80],"which":[81],"express":[85],"proteins":[86],"especially":[88],"in":[91,117,136],"free":[92],"text),":[93],"lack":[96],"a":[98],"standard":[99],"training":[100,132],"set.":[101],"A":[102],"very":[105],"different":[106],"strategies":[107],"tackle":[111],"this":[112],"task.":[113],"The":[114],"dataset":[115],"generated":[116],"line":[118],"with":[119],"BioCreative":[121],"challenge":[122],"is":[123],"publicly":[124],"available":[125],"will":[127],"allow":[128],"new":[129],"possibilities":[130],"information":[133],"extraction":[134],"methods":[135],"domain":[138],"molecular":[140],"biology.":[141]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":13}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
