{"id":"https://openalex.org/W2140390159","doi":"https://doi.org/10.1186/1471-2105-6-47","title":"JAtlasView: a Java atlas-viewer for browsing biomedical 3D images and atlases","display_name":"JAtlasView: a Java atlas-viewer for browsing biomedical 3D images and atlases","publication_year":2005,"publication_date":"2005-03-09","ids":{"openalex":"https://openalex.org/W2140390159","doi":"https://doi.org/10.1186/1471-2105-6-47","mag":"2140390159","pmid":"https://pubmed.ncbi.nlm.nih.gov/15757508"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-6-47","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-47","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-47","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-47","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002020690","display_name":"Guangjie Feng","orcid":null},"institutions":[{"id":"https://openalex.org/I2800150677","display_name":"Western General Hospital","ror":"https://ror.org/009kr6r15","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1324252669","https://openalex.org/I2800150677"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Guangjie Feng","raw_affiliation_strings":["MRC Human Genetics Unit, Western General Hospital, Crewe Road, EH4 2XU, Edinburgh, UK. Guangjie.Feng@hgu.mrc.ac.uk <Guangjie.Feng@hgu.mrc.ac.uk>","MRC, Human Genetics Unit, Western General Hospital, Edinburgh, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Human Genetics Unit, Western General Hospital, Crewe Road, EH4 2XU, Edinburgh, UK. Guangjie.Feng@hgu.mrc.ac.uk <Guangjie.Feng@hgu.mrc.ac.uk>","institution_ids":["https://openalex.org/I2800150677"]},{"raw_affiliation_string":"MRC, Human Genetics Unit, Western General Hospital, Edinburgh, UK","institution_ids":["https://openalex.org/I2800150677"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079049557","display_name":"Nick Burton","orcid":"https://orcid.org/0000-0002-5495-3988"},"institutions":[{"id":"https://openalex.org/I2800150677","display_name":"Western General Hospital","ror":"https://ror.org/009kr6r15","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1324252669","https://openalex.org/I2800150677"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nick Burton","raw_affiliation_strings":["MRC Human Genetics Unit, Western General Hospital, Crewe Road, EH4 2XU, Edinburgh, UK","MRC, Human Genetics Unit, Western General Hospital, Edinburgh, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Human Genetics Unit, Western General Hospital, Crewe Road, EH4 2XU, Edinburgh, UK","institution_ids":["https://openalex.org/I2800150677"]},{"raw_affiliation_string":"MRC, Human Genetics Unit, Western General Hospital, Edinburgh, UK","institution_ids":["https://openalex.org/I2800150677"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074966091","display_name":"Bill Hill","orcid":"https://orcid.org/0000-0002-8988-0627"},"institutions":[{"id":"https://openalex.org/I2800150677","display_name":"Western General Hospital","ror":"https://ror.org/009kr6r15","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1324252669","https://openalex.org/I2800150677"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Bill Hill","raw_affiliation_strings":["MRC Human Genetics Unit, Western General Hospital, Crewe Road, EH4 2XU, Edinburgh, UK","MRC, Human Genetics Unit, Western General Hospital, Edinburgh, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Human Genetics Unit, Western General Hospital, Crewe Road, EH4 2XU, Edinburgh, UK","institution_ids":["https://openalex.org/I2800150677"]},{"raw_affiliation_string":"MRC, Human Genetics Unit, Western General Hospital, Edinburgh, UK","institution_ids":["https://openalex.org/I2800150677"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110600428","display_name":"Duncan Davidson","orcid":null},"institutions":[{"id":"https://openalex.org/I2800150677","display_name":"Western General Hospital","ror":"https://ror.org/009kr6r15","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1324252669","https://openalex.org/I2800150677"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Duncan Davidson","raw_affiliation_strings":["MRC Human Genetics Unit, Western General Hospital, Crewe Road, EH4 2XU, Edinburgh, UK","MRC, Human Genetics Unit, Western General Hospital, Edinburgh, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Human Genetics Unit, Western General Hospital, Crewe Road, EH4 2XU, Edinburgh, UK","institution_ids":["https://openalex.org/I2800150677"]},{"raw_affiliation_string":"MRC, Human Genetics Unit, Western General Hospital, Edinburgh, UK","institution_ids":["https://openalex.org/I2800150677"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108433217","display_name":"Janet Kerwin","orcid":"https://orcid.org/0009-0006-5163-2405"},"institutions":[{"id":"https://openalex.org/I2802983449","display_name":"Centre for Life","ror":"https://ror.org/027tbp210","country_code":"GB","type":"other","lineage":["https://openalex.org/I2802983449"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Janet Kerwin","raw_affiliation_strings":["The Institute of Human Genetics, University of Newcastle, International Centre for Life, Central Parkway, Newcastle-upon-Tyne, NE1 3BZ, UK","The Institute of Human Genetics, University of Newcastle, International Centre for Life, Newcastle-upon-Tyne, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Institute of Human Genetics, University of Newcastle, International Centre for Life, Central Parkway, Newcastle-upon-Tyne, NE1 3BZ, UK","institution_ids":["https://openalex.org/I2802983449"]},{"raw_affiliation_string":"The Institute of Human Genetics, University of Newcastle, International Centre for Life, Newcastle-upon-Tyne, UK","institution_ids":["https://openalex.org/I2802983449"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006269410","display_name":"Mark D. Scott","orcid":"https://orcid.org/0000-0002-2882-156X"},"institutions":[{"id":"https://openalex.org/I2802983449","display_name":"Centre for Life","ror":"https://ror.org/027tbp210","country_code":"GB","type":"other","lineage":["https://openalex.org/I2802983449"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mark Scott","raw_affiliation_strings":["The Institute of Human Genetics, University of Newcastle, International Centre for Life, Central Parkway, Newcastle-upon-Tyne, NE1 3BZ, UK","The Institute of Human Genetics, University of Newcastle, International Centre for Life, Newcastle-upon-Tyne, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Institute of Human Genetics, University of Newcastle, International Centre for Life, Central Parkway, Newcastle-upon-Tyne, NE1 3BZ, UK","institution_ids":["https://openalex.org/I2802983449"]},{"raw_affiliation_string":"The Institute of Human Genetics, University of Newcastle, International Centre for Life, Newcastle-upon-Tyne, UK","institution_ids":["https://openalex.org/I2802983449"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030323322","display_name":"Susan Lindsay","orcid":"https://orcid.org/0000-0003-2980-4582"},"institutions":[{"id":"https://openalex.org/I2802983449","display_name":"Centre for Life","ror":"https://ror.org/027tbp210","country_code":"GB","type":"other","lineage":["https://openalex.org/I2802983449"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Susan Lindsay","raw_affiliation_strings":["The Institute of Human Genetics, University of Newcastle, International Centre for Life, Central Parkway, Newcastle-upon-Tyne, NE1 3BZ, UK","The Institute of Human Genetics, University of Newcastle, International Centre for Life, Newcastle-upon-Tyne, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Institute of Human Genetics, University of Newcastle, International Centre for Life, Central Parkway, Newcastle-upon-Tyne, NE1 3BZ, UK","institution_ids":["https://openalex.org/I2802983449"]},{"raw_affiliation_string":"The Institute of Human Genetics, University of Newcastle, International Centre for Life, Newcastle-upon-Tyne, UK","institution_ids":["https://openalex.org/I2802983449"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057893272","display_name":"Richard Baldock","orcid":"https://orcid.org/0000-0003-0332-6877"},"institutions":[{"id":"https://openalex.org/I2800150677","display_name":"Western General Hospital","ror":"https://ror.org/009kr6r15","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1324252669","https://openalex.org/I2800150677"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Richard Baldock","raw_affiliation_strings":["MRC Human Genetics Unit, Western General Hospital, Crewe Road, EH4 2XU, Edinburgh, UK","MRC, Human Genetics Unit, Western General Hospital, Edinburgh, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Human Genetics Unit, Western General Hospital, Crewe Road, EH4 2XU, Edinburgh, UK","institution_ids":["https://openalex.org/I2800150677"]},{"raw_affiliation_string":"MRC, Human Genetics Unit, Western General Hospital, Edinburgh, UK","institution_ids":["https://openalex.org/I2800150677"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5002020690"],"corresponding_institution_ids":["https://openalex.org/I2800150677"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.4955,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.82647566,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"6","issue":"1","first_page":"47","last_page":"47"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11984","display_name":"Anatomy and Medical Technology","score":0.3043999969959259,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11984","display_name":"Anatomy and Medical Technology","score":0.3043999969959259,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.07349999994039536,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.042899999767541885,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.871030330657959},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.783541738986969},{"id":"https://openalex.org/keywords/rendering","display_name":"Rendering (computer graphics)","score":0.6282802224159241},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6021760702133179},{"id":"https://openalex.org/keywords/java-annotation","display_name":"Java annotation","score":0.5482304096221924},{"id":"https://openalex.org/keywords/application-programming-interface","display_name":"Application programming interface","score":0.5253264904022217},{"id":"https://openalex.org/keywords/workstation","display_name":"Workstation","score":0.5099500417709351},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.4872550070285797},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4803805947303772},{"id":"https://openalex.org/keywords/volume-rendering","display_name":"Volume rendering","score":0.47933945059776306},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.41867926716804504},{"id":"https://openalex.org/keywords/java-applet","display_name":"Java applet","score":0.4084131717681885},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2714359164237976},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1694604754447937},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.16108182072639465}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.871030330657959},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.783541738986969},{"id":"https://openalex.org/C205711294","wikidata":"https://www.wikidata.org/wiki/Q176953","display_name":"Rendering (computer graphics)","level":2,"score":0.6282802224159241},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6021760702133179},{"id":"https://openalex.org/C168702491","wikidata":"https://www.wikidata.org/wiki/Q567345","display_name":"Java annotation","level":4,"score":0.5482304096221924},{"id":"https://openalex.org/C99613125","wikidata":"https://www.wikidata.org/wiki/Q165194","display_name":"Application programming interface","level":2,"score":0.5253264904022217},{"id":"https://openalex.org/C67953723","wikidata":"https://www.wikidata.org/wiki/Q192525","display_name":"Workstation","level":2,"score":0.5099500417709351},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.4872550070285797},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4803805947303772},{"id":"https://openalex.org/C30769735","wikidata":"https://www.wikidata.org/wiki/Q2165951","display_name":"Volume rendering","level":3,"score":0.47933945059776306},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.41867926716804504},{"id":"https://openalex.org/C15524039","wikidata":"https://www.wikidata.org/wiki/Q865817","display_name":"Java applet","level":3,"score":0.4084131717681885},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2714359164237976},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1694604754447937},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.16108182072639465},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000715","descriptor_name":"Anatomy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000715","descriptor_name":"Anatomy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000715","descriptor_name":"Anatomy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000715","descriptor_name":"Anatomy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001270","descriptor_name":"Cervical Atlas","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001270","descriptor_name":"Cervical Atlas","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001270","descriptor_name":"Cervical Atlas","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001270","descriptor_name":"Cervical Atlas","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D003194","descriptor_name":"Computer-Assisted Instruction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003194","descriptor_name":"Computer-Assisted Instruction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003194","descriptor_name":"Computer-Assisted Instruction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003194","descriptor_name":"Computer-Assisted Instruction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003626","descriptor_name":"Data Display","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003626","descriptor_name":"Data Display","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003626","descriptor_name":"Data Display","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003626","descriptor_name":"Data Display","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008953","descriptor_name":"Models, Anatomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008953","descriptor_name":"Models, Anatomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008953","descriptor_name":"Models, Anatomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008953","descriptor_name":"Models, Anatomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019412","descriptor_name":"Anatomy, Cross-Sectional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019412","descriptor_name":"Anatomy, Cross-Sectional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019412","descriptor_name":"Anatomy, Cross-Sectional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019412","descriptor_name":"Anatomy, Cross-Sectional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/1471-2105-6-47","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-47","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-47","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15757508","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15757508","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pure.ed.ac.uk:openaire/c59ada80-828a-4927-a0fd-d1faa5495485","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/c59ada80-828a-4927-a0fd-d1faa5495485","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Feng, G, Burton, N, Hill, B, Davidson, D, Kerwin, J, Scott, M, Lindsay, S & Baldock, R 2005, 'JAtlasView : a Java atlas-viewer for browsing biomedical 3D images and atlases', BMC Bioinformatics, vol. 6, 47. https://doi.org/10.1186/1471-2105-6-47","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:c1b4b8a4c588400aa1c518885a7ef11b","is_oa":false,"landing_page_url":"https://doaj.org/article/c1b4b8a4c588400aa1c518885a7ef11b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 6, Iss 1, p 47 (2005)","raw_type":"article"},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:b3e4035","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:555758","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/555758","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.ed.ac.uk:publications/c59ada80-828a-4927-a0fd-d1faa5495485","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11820/c59ada80-828a-4927-a0fd-d1faa5495485","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.1186/1471-2105-6-47","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-47","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-47","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5600000023841858,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2140390159.pdf","grobid_xml":"https://content.openalex.org/works/W2140390159.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W87124356","https://openalex.org/W1536800228","https://openalex.org/W1575504122","https://openalex.org/W1982441710","https://openalex.org/W1988418842","https://openalex.org/W2014946063","https://openalex.org/W2036314401","https://openalex.org/W2040529976","https://openalex.org/W2118579925","https://openalex.org/W2152722232","https://openalex.org/W2622427009","https://openalex.org/W3038698521"],"related_works":["https://openalex.org/W1487686959","https://openalex.org/W1584410446","https://openalex.org/W197458610","https://openalex.org/W2066931381","https://openalex.org/W2610728208","https://openalex.org/W2186199411","https://openalex.org/W2384200338","https://openalex.org/W3021714562","https://openalex.org/W2064285201","https://openalex.org/W2948473269"],"abstract_inverted_index":{"BACKGROUND:":[0],"Many":[1],"three-dimensional":[2],"(3D)":[3],"images":[4],"are":[5,30],"routinely":[6],"collected":[7],"in":[8,150],"biomedical":[9],"research":[10],"and":[11,20,87,92,114,141,195],"a":[12,74,137,172],"number":[13,27],"of":[14,28,73,89,111,132,192],"digital":[15],"atlases":[16],"with":[17,152],"associated":[18],"anatomical":[19,142],"other":[21],"information":[22],"have":[23],"been":[24],"published.":[25],"A":[26],"tools":[29,95,194],"available":[31,76],"for":[32,80,124,128,176,189],"viewing":[33],"this":[34],"data":[35,113,162],"ranging":[36],"from":[37],"commercial":[38],"visualization":[39],"packages":[40],"to":[41,56,99,198,204],"freely":[42,75],"available,":[43],"typically":[44],"system":[45],"architecture":[46,63],"dependent,":[47],"solutions.":[48],"Here":[49],"we":[50],"discuss":[51],"an":[52,186],"atlas":[53],"viewer":[54,79,91,107],"implemented":[55],"run":[57],"on":[58],"any":[59],"workstation":[60],"using":[61,165],"the":[62,71,85,90,101,112,118,129,133,155,160,166],"neutral":[64],"Java":[65,77,102,151,184],"programming":[66],"language.":[67],"RESULTS:":[68],"We":[69,181],"report":[70],"development":[72,191],"based":[78],"3D":[81,138,156],"image":[82,161],"data,":[83,123],"descibe":[84],"structure":[86],"functionality":[88],"how":[93],"automated":[94],"can":[96],"be":[97,205],"developed":[98,149],"manage":[100],"Native":[103],"Interface":[104],"code.":[105],"The":[106,146],"allows":[108],"arbitrary":[109],"re-sectioning":[110],"interactive":[115],"browsing":[116,143],"through":[117],"volume.":[119],"With":[120],"appropriately":[121],"formatted":[122],"example":[125],"as":[126,171],"provided":[127,170],"Electronic":[130],"Atlas":[131],"Developing":[134],"Human":[135],"Brain,":[136],"surface":[139],"view":[140],"is":[144,148,163],"available.":[145],"interface":[147],"Java3D":[153],"providing":[154],"rendering.":[157],"For":[158],"efficiency":[159],"manipulated":[164],"Woolz":[167],"image-processing":[168,202],"library":[169],"dynamically":[173],"linked":[174],"module":[175],"each":[177],"machine":[178],"architecture.":[179],"CONCLUSION:":[180],"conclude":[182],"that":[183],"provides":[185],"appropriate":[187],"environment":[188],"efficient":[190,201],"these":[193],"techniques":[196],"exist":[197],"allow":[199],"computationally":[200],"libraries":[203],"integrated":[206],"relatively":[207],"easily.":[208]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
