{"id":"https://openalex.org/W1876995302","doi":"https://doi.org/10.1186/1471-2105-6-292","title":"SNP-VISTA: An interactive SNP visualization tool","display_name":"SNP-VISTA: An interactive SNP visualization tool","publication_year":2005,"publication_date":"2005-12-08","ids":{"openalex":"https://openalex.org/W1876995302","doi":"https://doi.org/10.1186/1471-2105-6-292","mag":"1876995302","pmid":"https://pubmed.ncbi.nlm.nih.gov/16336665"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-6-292","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-292","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-292","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-292","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031010165","display_name":"Nameeta Shah","orcid":"https://orcid.org/0000-0002-4429-8414"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nameeta Shah","raw_affiliation_strings":["Institute for Data Analysis and Visualization, (IDAV), Department of Computer Science, University of California, Davis, One ShieldsAve., Davis, CA 95616, USA. nyshah@ucdavis.edu","Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, USA","Institute for Data Analysis and Visualization, (IDAV), Department of Computer Science, University of California, Davis, Davis, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Data Analysis and Visualization, (IDAV), Department of Computer Science, University of California, Davis, One ShieldsAve., Davis, CA 95616, USA. nyshah@ucdavis.edu","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, USA","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"Institute for Data Analysis and Visualization, (IDAV), Department of Computer Science, University of California, Davis, Davis, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047511961","display_name":"Michael V. Teplitsky","orcid":null},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael V Teplitsky","raw_affiliation_strings":["Genomics Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA, 94720, USA","Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA, 94720, USA","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048467633","display_name":"Simon Minovitsky","orcid":null},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Simon Minovitsky","raw_affiliation_strings":["Genomics Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA, 94720, USA","Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA, 94720, USA","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031716064","display_name":"L Pennacchio","orcid":"https://orcid.org/0000-0002-8748-3732"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Len A Pennacchio","raw_affiliation_strings":["DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA","Genomics Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA, 94720, USA","DOE Joint Genome Institute, Walnut Creek, USA","Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"Genomics Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA, 94720, USA","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"DOE Joint Genome Institute, Walnut Creek, USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075159561","display_name":"Philip Hugenholtz","orcid":"https://orcid.org/0000-0001-5386-7925"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Philip Hugenholtz","raw_affiliation_strings":["DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA","DOE Joint Genome Institute, Walnut Creek, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"DOE Joint Genome Institute, Walnut Creek, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077191719","display_name":"Bernd Hamann","orcid":"https://orcid.org/0000-0002-3579-5005"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bernd Hamann","raw_affiliation_strings":["Genomics Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA, 94720, USA","Institute for Data Analysis and Visualization, (IDAV), Department of Computer Science, University of California, Davis, One Shields Ave, Davis, CA, 95616, USA","Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, USA","Institute for Data Analysis and Visualization, (IDAV), Department of Computer Science, University of California, Davis, Davis, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA, 94720, USA","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"Institute for Data Analysis and Visualization, (IDAV), Department of Computer Science, University of California, Davis, One Shields Ave, Davis, CA, 95616, USA","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, USA","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"Institute for Data Analysis and Visualization, (IDAV), Department of Computer Science, University of California, Davis, Davis, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5107834893","display_name":"Inna Dubchak","orcid":null},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Inna L Dubchak","raw_affiliation_strings":["DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA","Genomics Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA, 94720, USA","DOE Joint Genome Institute, Walnut Creek, USA","Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"Genomics Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA, 94720, USA","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"DOE Joint Genome Institute, Walnut Creek, USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, USA","institution_ids":["https://openalex.org/I148283060"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5107834893"],"corresponding_institution_ids":["https://openalex.org/I148283060","https://openalex.org/I196679689"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":1.4233,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.80497522,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"6","issue":"1","first_page":"292","last_page":"292"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.07930000126361847,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.07930000126361847,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10733","display_name":"Wheat and Barley Genetics and Pathology","score":0.0502999983727932,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.05000000074505806,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6924988031387329},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.6853282451629639},{"id":"https://openalex.org/keywords/tag-snp","display_name":"Tag SNP","score":0.6117376685142517},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.6101164221763611},{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.5535604357719421},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5493344068527222},{"id":"https://openalex.org/keywords/snp-genotyping","display_name":"SNP genotyping","score":0.49466201663017273},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4630366265773773},{"id":"https://openalex.org/keywords/snp-array","display_name":"SNP array","score":0.44052261114120483},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.32697346806526184},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.1590038239955902}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6924988031387329},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.6853282451629639},{"id":"https://openalex.org/C55060382","wikidata":"https://www.wikidata.org/wiki/Q7675093","display_name":"Tag SNP","level":5,"score":0.6117376685142517},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6101164221763611},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.5535604357719421},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5493344068527222},{"id":"https://openalex.org/C163691529","wikidata":"https://www.wikidata.org/wiki/Q7391886","display_name":"SNP genotyping","level":5,"score":0.49466201663017273},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4630366265773773},{"id":"https://openalex.org/C122060243","wikidata":"https://www.wikidata.org/wiki/Q7391885","display_name":"SNP array","level":5,"score":0.44052261114120483},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.32697346806526184},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.1590038239955902}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004252","descriptor_name":"DNA Mutational Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004252","descriptor_name":"DNA Mutational Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004252","descriptor_name":"DNA Mutational Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015810","descriptor_name":"Linkage Disequilibrium","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015810","descriptor_name":"Linkage Disequilibrium","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015810","descriptor_name":"Linkage Disequilibrium","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1186/1471-2105-6-292","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-292","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-292","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16336665","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16336665","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt3kr7k5tc","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/3kr7k5tc","pdf_url":"https://escholarship.org/uc/item/3kr7k5tc","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, vol 6","raw_type":"article"},{"id":"pmh:oai:osti.gov:1626308","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1626308","pdf_url":"https://www.osti.gov/servlets/purl/1626308","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:qt3kr7k5tc","is_oa":true,"landing_page_url":"http://www.escholarship.org/uc/item/3kr7k5tc","pdf_url":"http://www.escholarship.org/uc/item/3kr7k5tc","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Shah, Nameeta; Teplitsky, Michael V; Minovitsky, Simon; Pennacchio, Len A; Hugenholtz, Philip; Hamann, Bernd; \u00c2\u00a0et al.(2005). SNP-VISTA: An interactive SNP visualization tool. BMC Bioinformatics, 6, 292 - 292. UC Davis: Retrieved from: http://www.escholarship.org/uc/item/3kr7k5tc","raw_type":"article"},{"id":"pmh:oai:doaj.org/article:912579df7eaa45f79b1d71ce870bbf2d","is_oa":true,"landing_page_url":"https://doaj.org/article/912579df7eaa45f79b1d71ce870bbf2d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 6, Iss 1, p 292 (2005)","raw_type":"article"},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:262640","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1325058","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1325058","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-6-292","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-292","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-292","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.6200000047683716,"id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G1143651532","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320338292","funder_display_name":"Lawrence Berkeley National Laboratory"},{"id":"https://openalex.org/G1286236842","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1337544421","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G1581387393","display_name":null,"funder_award_id":"No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G2857863752","display_name":null,"funder_award_id":"No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320338292","funder_display_name":"Lawrence Berkeley National Laboratory"},{"id":"https://openalex.org/G3083819904","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3944918260","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4501827968","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4565140552","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G6348972864","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7148947613","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337547","funder_display_name":"Laboratory Directed Research and Development"},{"id":"https://openalex.org/G7354628648","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320338292","funder_display_name":"Lawrence Berkeley National Laboratory"},{"id":"https://openalex.org/G7538560101","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7629237052","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G7672463193","display_name":null,"funder_award_id":"No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G7787287669","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G8306346728","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320338292","funder_display_name":"Lawrence Berkeley National Laboratory"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320332564","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337509","display_name":"Biological and Environmental Research","ror":"https://ror.org/0114b2m14"},{"id":"https://openalex.org/F4320337547","display_name":"Laboratory Directed Research and Development","ror":"https://ror.org/01e41cf67"},{"id":"https://openalex.org/F4320338292","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1876995302.pdf","grobid_xml":"https://content.openalex.org/works/W1876995302.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1711580613","https://openalex.org/W2008321551","https://openalex.org/W2032445907","https://openalex.org/W2058401000","https://openalex.org/W2061008984","https://openalex.org/W2094289966","https://openalex.org/W2109372707","https://openalex.org/W2113601822","https://openalex.org/W2114053482","https://openalex.org/W2124637227","https://openalex.org/W2126809954","https://openalex.org/W2127230663","https://openalex.org/W2138891742","https://openalex.org/W2141481588","https://openalex.org/W2157276565","https://openalex.org/W2158421363","https://openalex.org/W2165460636","https://openalex.org/W2168909179"],"related_works":["https://openalex.org/W2070581548","https://openalex.org/W1978000554","https://openalex.org/W2583457094","https://openalex.org/W2101398264","https://openalex.org/W2415959690","https://openalex.org/W2168919926","https://openalex.org/W2331649876","https://openalex.org/W2404263145","https://openalex.org/W1504890006","https://openalex.org/W2329144129"],"abstract_inverted_index":{"BACKGROUND:":[0],"Recent":[1],"advances":[2],"in":[3,36,46,70,76,90,143,177,204,210],"sequencing":[4,106],"technologies":[5],"promise":[6],"to":[7,61,79,92,107,141,193],"provide":[8],"a":[9,47,63,73],"better":[10,269],"understanding":[11,270],"of":[12,15,23,39,50,66,96,103,115,135,146,150,156,161,170,186,191,198,208,221,232,240,252,260,271],"the":[13,21,37,94,100,144,147,205,276],"genetics":[14],"human":[16],"disease":[17,45,75],"as":[18,20,225,227],"well":[19,226],"evolution":[22,95],"microbial":[24,97,119,178],"populations.":[25,120],"Single":[26],"Nucleotide":[27],"Polymorphisms":[28],"(SNPs)":[29],"are":[30,246],"established":[31],"genetic":[32],"markers":[33],"that":[34,245],"aid":[35,142],"identification":[38],"loci":[40],"affecting":[41],"quantitative":[42],"traits":[43],"and/or":[44,163],"wide":[48],"variety":[49],"eukaryotic":[51],"species.":[52],"With":[53],"today's":[54],"technological":[55],"capabilities,":[56],"it":[57],"has":[58],"become":[59],"possible":[60],"re-sequence":[62,154],"large":[64],"set":[65],"appropriate":[67],"candidate":[68],"genes":[69,158],"individuals":[71],"with":[72],"given":[74],"an":[77,136],"attempt":[78],"identify":[80],"causative":[81,164],"mutations.":[82],"In":[83],"addition,":[84],"SNPs":[85,192],"have":[86,129],"been":[87],"used":[88],"extensively":[89],"efforts":[91],"study":[93],"populations,":[98],"and":[99,117,131,184,212,237,258,267],"recent":[101],"application":[102],"random":[104],"shotgun":[105],"environmental":[108],"samples":[109,211],"enables":[110],"more":[111],"extensive":[112],"SNP":[113,273],"analysis":[114],"co-occurring":[116],"co-evolving":[118],"The":[121,181,249],"program":[122],"is":[123,254],"available":[124],"at":[125],"http://genome.lbl.gov/vista/snpvista1.":[126],"RESULTS:":[127],"We":[128],"developed":[130],"present":[132],"two":[133],"modifications":[134],"interactive":[137,265],"visualization":[138],"tool,":[139],"SNP-VISTA,":[140],"analyses":[145],"following":[148],"types":[149],"data:":[151],"A.":[152],"Large-scale":[153],"data":[155,172,274],"disease-related":[157],"for":[159,173],"discovery":[160],"associated":[162],"alleles":[165],"(GeneSNP-VISTA).":[166],"B.":[167],"Massive":[168],"amounts":[169],"ecogenomics":[171],"studying":[174],"homologous":[175],"recombination":[176,243],"populations":[179],"(EcoSNP-VISTA).":[180],"main":[182,250],"features":[183],"capabilities":[185],"SNP-VISTA":[187,253],"are:":[188],"1)":[189],"mapping":[190],"gene":[194],"structure;":[195],"2)":[196],"classification":[197],"SNPs,":[199,222],"based":[200,217],"on":[201,218],"their":[202],"location":[203],"gene,":[206],"frequency":[207],"occurrence":[209],"allele":[213],"composition;":[214],"3)":[215],"clustering,":[216],"user-defined":[219],"subsets":[220],"highlighting":[223],"haplotypes":[224],"recombinant":[228],"sequences;":[229],"4)":[230],"integration":[231],"protein":[233],"evolutionary":[234],"conservation":[235],"visualization;":[236],"5)":[238],"display":[239],"automatically":[241],"calculated":[242],"points":[244],"user-editable.":[247],"CONCLUSION:":[248],"strength":[251],"its":[255],"graphical":[256],"interface":[257],"use":[259],"visual":[261],"representations,":[262],"which":[263],"support":[264],"exploration":[266],"hence":[268],"large-scale":[272],"by":[275],"user.":[277]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2012,"cited_by_count":4}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
