{"id":"https://openalex.org/W2096960798","doi":"https://doi.org/10.1186/1471-2105-6-223","title":"SUPERFICIAL \u2013 Surface mapping of proteins via structure-based peptide library design","display_name":"SUPERFICIAL \u2013 Surface mapping of proteins via structure-based peptide library design","publication_year":2005,"publication_date":"2005-09-09","ids":{"openalex":"https://openalex.org/W2096960798","doi":"https://doi.org/10.1186/1471-2105-6-223","mag":"2096960798","pmid":"https://pubmed.ncbi.nlm.nih.gov/16153304"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-6-223","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-223","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-223","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-223","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062823306","display_name":"Andrean Goede","orcid":"https://orcid.org/0000-0002-9044-9869"},"institutions":[{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"funder","lineage":["https://openalex.org/I7877124"]},{"id":"https://openalex.org/I4210139777","display_name":"Berlin Institute of Health at Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/0493xsw21","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210139777","https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Andrean Goede","raw_affiliation_strings":["Berlin Center for Genome Based Bioinformatics, 3D Data Mining Group, Institute of Biochemistry, Charit\u00e9, Monbijoustr. 2, 10117 Berlin, Germany. Andrean.Goede@charite.de","Berlin Center for Genome Based Bioinformatics, 3D Data Mining Group, Institute of Biochemistry, Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Berlin Center for Genome Based Bioinformatics, 3D Data Mining Group, Institute of Biochemistry, Charit\u00e9, Monbijoustr. 2, 10117 Berlin, Germany. Andrean.Goede@charite.de","institution_ids":["https://openalex.org/I7877124","https://openalex.org/I4210139777"]},{"raw_affiliation_string":"Berlin Center for Genome Based Bioinformatics, 3D Data Mining Group, Institute of Biochemistry, Berlin, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017506936","display_name":"Ines Jaeger","orcid":null},"institutions":[{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"funder","lineage":["https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ines S Jaeger","raw_affiliation_strings":["Berlin Center for Genome Based Bioinformatics, 3D Data Mining Group, Institute of Biochemistry, Charit\u00e9, Monbijoustr.2, 10117, Berlin, Germany","Berlin Center for Genome Based Bioinformatics, 3D Data Mining Group, Institute of Biochemistry, Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Berlin Center for Genome Based Bioinformatics, 3D Data Mining Group, Institute of Biochemistry, Charit\u00e9, Monbijoustr.2, 10117, Berlin, Germany","institution_ids":["https://openalex.org/I7877124"]},{"raw_affiliation_string":"Berlin Center for Genome Based Bioinformatics, 3D Data Mining Group, Institute of Biochemistry, Berlin, Germany","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043414157","display_name":"Robert Prei\u00dfner","orcid":"https://orcid.org/0000-0002-2407-1087"},"institutions":[{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"funder","lineage":["https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Robert Preissner","raw_affiliation_strings":["Berlin Center for Genome Based Bioinformatics, 3D Data Mining Group, Institute of Biochemistry, Charit\u00e9, Monbijoustr.2, 10117, Berlin, Germany","Berlin Center for Genome Based Bioinformatics, 3D Data Mining Group, Institute of Biochemistry, Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Berlin Center for Genome Based Bioinformatics, 3D Data Mining Group, Institute of Biochemistry, Charit\u00e9, Monbijoustr.2, 10117, Berlin, Germany","institution_ids":["https://openalex.org/I7877124"]},{"raw_affiliation_string":"Berlin Center for Genome Based Bioinformatics, 3D Data Mining Group, Institute of Biochemistry, Berlin, Germany","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5062823306"],"corresponding_institution_ids":["https://openalex.org/I4210139777","https://openalex.org/I7877124"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.2521,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.56337795,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"6","issue":"1","first_page":"223","last_page":"223"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.525058925151825},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5086868405342102},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.498227596282959},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.46464869379997253},{"id":"https://openalex.org/keywords/protein-array-analysis","display_name":"Protein Array Analysis","score":0.4164234697818756},{"id":"https://openalex.org/keywords/surface","display_name":"Surface (topology)","score":0.4161979854106903},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.39741256833076477},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24984312057495117},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14132314920425415},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13244059681892395},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.11071795225143433},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.09906190633773804},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08639734983444214}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.525058925151825},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5086868405342102},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.498227596282959},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.46464869379997253},{"id":"https://openalex.org/C2910703447","wikidata":"https://www.wikidata.org/wiki/Q494918","display_name":"Protein Array Analysis","level":5,"score":0.4164234697818756},{"id":"https://openalex.org/C2776799497","wikidata":"https://www.wikidata.org/wiki/Q484298","display_name":"Surface (topology)","level":2,"score":0.4161979854106903},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.39741256833076477},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24984312057495117},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14132314920425415},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13244059681892395},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.11071795225143433},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.09906190633773804},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08639734983444214},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010449","descriptor_name":"Peptide Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010449","descriptor_name":"Peptide Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010449","descriptor_name":"Peptide Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019151","descriptor_name":"Peptide Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019151","descriptor_name":"Peptide Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019151","descriptor_name":"Peptide Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-6-223","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-223","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-223","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16153304","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16153304","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:b5265411e6844fb8a5bbe66805b7a0b0","is_oa":true,"landing_page_url":"https://doaj.org/article/b5265411e6844fb8a5bbe66805b7a0b0","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 6, Iss 1, p 223 (2005)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1242346","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1242346","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-6-223","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-223","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-223","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7225624288","display_name":null,"funder_award_id":"This work was","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2096960798.pdf","grobid_xml":"https://content.openalex.org/works/W2096960798.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W922823","https://openalex.org/W70790455","https://openalex.org/W1566208794","https://openalex.org/W1964048941","https://openalex.org/W1974256928","https://openalex.org/W1976801077","https://openalex.org/W1984259239","https://openalex.org/W2002435489","https://openalex.org/W2008708467","https://openalex.org/W2038893903","https://openalex.org/W2080584551","https://openalex.org/W2087230890","https://openalex.org/W2094320255","https://openalex.org/W2129593708","https://openalex.org/W2159400443","https://openalex.org/W2160690759","https://openalex.org/W2314143926","https://openalex.org/W2949370773"],"related_works":["https://openalex.org/W2007390442","https://openalex.org/W2016470259","https://openalex.org/W2169918901","https://openalex.org/W2384737449","https://openalex.org/W2035812229","https://openalex.org/W4250142241","https://openalex.org/W2076275400","https://openalex.org/W1969541360","https://openalex.org/W1999577806","https://openalex.org/W138917419"],"abstract_inverted_index":{"Based":[0],"on":[1],"3D":[2],"structures,":[3],"SUPERFICIAL":[4],"may":[5],"help":[6],"to":[7],"negotiate":[8],"some":[9],"of":[10,18],"the":[11],"existing":[12],"limitations,":[13],"since":[14],"binding":[15],"sites":[16],"consisting":[17],"several":[19],"linear":[20],"pieces":[21],"can":[22],"now":[23],"be":[24],"detected.":[25]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
