{"id":"https://openalex.org/W1869957243","doi":"https://doi.org/10.1186/1471-2105-6-183","title":"Inconsistencies over time in 5% of NetAffx probe-to-gene annotations","display_name":"Inconsistencies over time in 5% of NetAffx probe-to-gene annotations","publication_year":2005,"publication_date":"2005-07-20","ids":{"openalex":"https://openalex.org/W1869957243","doi":"https://doi.org/10.1186/1471-2105-6-183","mag":"1869957243","pmid":"https://pubmed.ncbi.nlm.nih.gov/16033654"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-6-183","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-183","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-183","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-183","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111654428","display_name":"Carolina Perez\u2010Iratxeta","orcid":null},"institutions":[{"id":"https://openalex.org/I2802127592","display_name":"Ontario Genomics","ror":"https://ror.org/00c68jz96","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I2802127592"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Carolina Perez-Iratxeta","raw_affiliation_strings":["Ontario Genomics Innovation Centre, Ottawa Health Research Institute, 501 Smyth Rd, Ottawa, Ontario, K1H 8L6, Canada","Ontario Genomics Innovation Centre, Ottawa Health Research Institute, Ottawa, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ontario Genomics Innovation Centre, Ottawa Health Research Institute, 501 Smyth Rd, Ottawa, Ontario, K1H 8L6, Canada","institution_ids":["https://openalex.org/I2802127592"]},{"raw_affiliation_string":"Ontario Genomics Innovation Centre, Ottawa Health Research Institute, Ottawa, Canada","institution_ids":["https://openalex.org/I2802127592"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010178662","display_name":"Miguel A. Andrade\u2010Navarro","orcid":"https://orcid.org/0000-0001-6650-1711"},"institutions":[{"id":"https://openalex.org/I2802127592","display_name":"Ontario Genomics","ror":"https://ror.org/00c68jz96","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I2802127592"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Miguel A Andrade","raw_affiliation_strings":["Ontario Genomics Innovation Centre, Ottawa Health Research Institute, 501 Smyth Rd, Ottawa, Ontario, K1H 8L6, Canada","Ontario Genomics Innovation Centre, Ottawa Health Research Institute, Ottawa, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ontario Genomics Innovation Centre, Ottawa Health Research Institute, 501 Smyth Rd, Ottawa, Ontario, K1H 8L6, Canada","institution_ids":["https://openalex.org/I2802127592"]},{"raw_affiliation_string":"Ontario Genomics Innovation Centre, Ottawa Health Research Institute, Ottawa, Canada","institution_ids":["https://openalex.org/I2802127592"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I2802127592"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":2.0169,"has_fulltext":true,"cited_by_count":27,"citation_normalized_percentile":{"value":0.85320709,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"6","issue":"1","first_page":"183","last_page":"183"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9470000267028809,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9470000267028809,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.005799999926239252,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.004800000227987766,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.7460188269615173},{"id":"https://openalex.org/keywords/microarray","display_name":"Microarray","score":0.701322078704834},{"id":"https://openalex.org/keywords/microarray-databases","display_name":"Microarray databases","score":0.6952062845230103},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6863645315170288},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.598545253276825},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5349411368370056},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5020763874053955},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4992787837982178},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.49586495757102966},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.44718751311302185},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4427221417427063},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3668583929538727},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32879793643951416},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3166159987449646},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.16561591625213623}],"concepts":[{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.7460188269615173},{"id":"https://openalex.org/C186836561","wikidata":"https://www.wikidata.org/wiki/Q1931516","display_name":"Microarray","level":4,"score":0.701322078704834},{"id":"https://openalex.org/C548314002","wikidata":"https://www.wikidata.org/wiki/Q6839218","display_name":"Microarray databases","level":5,"score":0.6952062845230103},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6863645315170288},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.598545253276825},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5349411368370056},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5020763874053955},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4992787837982178},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.49586495757102966},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.44718751311302185},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4427221417427063},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3668583929538727},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32879793643951416},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3166159987449646},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.16561591625213623},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004867","descriptor_name":"Equipment Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004867","descriptor_name":"Equipment Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004867","descriptor_name":"Equipment Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-6-183","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-183","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-183","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16033654","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16033654","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:b8e4e804c02740e480bd0800c8a7529a","is_oa":false,"landing_page_url":"https://doaj.org/article/b8e4e804c02740e480bd0800c8a7529a","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 6, Iss 1, p 183 (2005)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1188054","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1188054","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-6-183","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-6-183","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-6-183","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322724","display_name":"Ministry of Education, India","ror":"https://ror.org/048xjjh50"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1869957243.pdf","grobid_xml":"https://content.openalex.org/works/W1869957243.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W1583792241","https://openalex.org/W2035610240","https://openalex.org/W2091446754","https://openalex.org/W2096525273","https://openalex.org/W2100639130","https://openalex.org/W2131657764","https://openalex.org/W2148911704","https://openalex.org/W4245803912"],"related_works":["https://openalex.org/W3152114242","https://openalex.org/W2796636403","https://openalex.org/W170658859","https://openalex.org/W1547158732","https://openalex.org/W2151007749","https://openalex.org/W2028324514","https://openalex.org/W2074092657","https://openalex.org/W2490137852","https://openalex.org/W1483316219","https://openalex.org/W3023720143"],"abstract_inverted_index":{"BACKGROUND:":[0],"DNA":[1],"microarray":[2,49,72,116,124],"probes":[3,29,78],"are":[4,38,51],"designed":[5],"to":[6,61,80,109,119,123,127],"match":[7],"particular":[8,70],"mRNA":[9],"transcripts,":[10],"often":[11],"based":[12],"on":[13],"expressed":[14],"sequences":[15],"like":[16],"ESTs,":[17],"or":[18],"cDNAs,":[19],"many":[20],"times":[21],"incomplete.":[22],"As":[23],"a":[24,69,102],"result,":[25],"the":[26,35,45,62,75,92,96,130,133,138],"relations":[27],"between":[28],"and":[30,118],"genes":[31,57,82],"can":[32],"change":[33,83],"as":[34,54],"sequence":[36],"data":[37,134],"updated.":[39],"However,":[40],"it":[41],"is":[42,135],"frequent":[43],"that":[44,74,129],"reported":[46],"results":[47],"of":[48,56,77,91,98,132,141],"analyses":[50,122],"given":[52],"just":[53],"lists":[55],"without":[58],"any":[59],"reference":[60],"underlying":[63],"probes.":[64],"RESULTS:":[65],"We":[66,107],"show":[67],"for":[68],"commercial":[71],"design":[73],"number":[76],"associated":[79],"some":[81],"with":[84,137],"time.":[85],"These":[86],"changes":[87],"concern":[88],"approximately":[89],"5%":[90],"probe":[93,111],"sets":[94],"across":[95],"history":[97],"annotation":[99],"releases":[100],"over":[101],"two":[103],"year":[104],"span.":[105],"CONCLUSION:":[106],"recommend":[108],"report":[110],"set":[112,140],"identifiers":[113],"when":[114],"publishing":[115],"results,":[117],"submit":[120],"those":[121],"public":[125],"databases":[126],"ensure":[128],"interpretation":[131],"updated":[136],"latest":[139],"annotations.":[142]},"counts_by_year":[{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
