{"id":"https://openalex.org/W1625699506","doi":"https://doi.org/10.1186/1471-2105-5-88","title":"RAG: RNA-As-Graphs web resource","display_name":"RAG: RNA-As-Graphs web resource","publication_year":2004,"publication_date":"2004-07-06","ids":{"openalex":"https://openalex.org/W1625699506","doi":"https://doi.org/10.1186/1471-2105-5-88","mag":"1625699506","pmid":"https://pubmed.ncbi.nlm.nih.gov/15238163"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-5-88","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-88","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-88","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-88","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016756693","display_name":"Daniela Fera","orcid":null},"institutions":[{"id":"https://openalex.org/I36672615","display_name":"Courant Institute of Mathematical Sciences","ror":"https://ror.org/037tm7f56","country_code":"US","type":"education","lineage":["https://openalex.org/I36672615","https://openalex.org/I57206974"]},{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniela Fera","raw_affiliation_strings":["Department of Chemistry, New York University, New York, NY 10003, USA. df448@nyu.edu","Courant Institute of Mathematical Sciences, New York University, New York, USA","Department of Chemistry, New York University, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, New York University, New York, NY 10003, USA. df448@nyu.edu","institution_ids":["https://openalex.org/I57206974"]},{"raw_affiliation_string":"Courant Institute of Mathematical Sciences, New York University, New York, USA","institution_ids":["https://openalex.org/I36672615","https://openalex.org/I57206974"]},{"raw_affiliation_string":"Department of Chemistry, New York University, New York, USA","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100349912","display_name":"Namhee Kim","orcid":"https://orcid.org/0000-0001-9828-9540"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Namhee Kim","raw_affiliation_strings":["Department of Chemistry, New York University, 100 Washington Square East, Room 1001, New York, NY, 10003, USA","Department of Chemistry , New York University , New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, New York University, 100 Washington Square East, Room 1001, New York, NY, 10003, USA","institution_ids":["https://openalex.org/I57206974"]},{"raw_affiliation_string":"Department of Chemistry , New York University , New York, USA","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063477630","display_name":"Nahum Shiffeldrim","orcid":null},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nahum Shiffeldrim","raw_affiliation_strings":["Department of Chemistry, New York University, 100 Washington Square East, Room 1001, New York, NY, 10003, USA","Department of Chemistry , New York University , New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, New York University, 100 Washington Square East, Room 1001, New York, NY, 10003, USA","institution_ids":["https://openalex.org/I57206974"]},{"raw_affiliation_string":"Department of Chemistry , New York University , New York, USA","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045644512","display_name":"Julie A. Zorn","orcid":"https://orcid.org/0000-0001-5398-7089"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Julie Zorn","raw_affiliation_strings":["Department of Chemistry, New York University, 100 Washington Square East, Room 1001, New York, NY, 10003, USA","Department of Chemistry , New York University , New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, New York University, 100 Washington Square East, Room 1001, New York, NY, 10003, USA","institution_ids":["https://openalex.org/I57206974"]},{"raw_affiliation_string":"Department of Chemistry , New York University , New York, USA","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025626996","display_name":"Uri Laserson","orcid":"https://orcid.org/0000-0002-8429-7686"},"institutions":[{"id":"https://openalex.org/I36672615","display_name":"Courant Institute of Mathematical Sciences","ror":"https://ror.org/037tm7f56","country_code":"US","type":"education","lineage":["https://openalex.org/I36672615","https://openalex.org/I57206974"]},{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Uri Laserson","raw_affiliation_strings":["Courant Institute of Mathematical Sciences, New York University, 251 Mercer Street, New York, NY, 10012, USA","Department of Chemistry, New York University, 100 Washington Square East, Room 1001, New York, NY, 10003, USA","Courant Institute of Mathematical Sciences, New York University, New York, USA","Department of Chemistry, New York University, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Courant Institute of Mathematical Sciences, New York University, 251 Mercer Street, New York, NY, 10012, USA","institution_ids":["https://openalex.org/I36672615","https://openalex.org/I57206974"]},{"raw_affiliation_string":"Department of Chemistry, New York University, 100 Washington Square East, Room 1001, New York, NY, 10003, USA","institution_ids":["https://openalex.org/I57206974"]},{"raw_affiliation_string":"Courant Institute of Mathematical Sciences, New York University, New York, USA","institution_ids":["https://openalex.org/I36672615","https://openalex.org/I57206974"]},{"raw_affiliation_string":"Department of Chemistry, New York University, New York, USA","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009852878","display_name":"Hin Hark Gan","orcid":"https://orcid.org/0000-0002-0952-1780"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hin Hark Gan","raw_affiliation_strings":["Department of Chemistry, New York University, 100 Washington Square East, Room 1001, New York, NY, 10003, USA","Department of Chemistry , New York University , New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, New York University, 100 Washington Square East, Room 1001, New York, NY, 10003, USA","institution_ids":["https://openalex.org/I57206974"]},{"raw_affiliation_string":"Department of Chemistry , New York University , New York, USA","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046513501","display_name":"Tamar Schlick","orcid":"https://orcid.org/0000-0002-2392-2062"},"institutions":[{"id":"https://openalex.org/I36672615","display_name":"Courant Institute of Mathematical Sciences","ror":"https://ror.org/037tm7f56","country_code":"US","type":"education","lineage":["https://openalex.org/I36672615","https://openalex.org/I57206974"]},{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Tamar Schlick","raw_affiliation_strings":["Courant Institute of Mathematical Sciences, New York University, 251 Mercer Street, New York, NY, 10012, USA","Department of Chemistry, New York University, 100 Washington Square East, Room 1001, New York, NY, 10003, USA","Courant Institute of Mathematical Sciences, New York University, New York, USA","Department of Chemistry, New York University, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Courant Institute of Mathematical Sciences, New York University, 251 Mercer Street, New York, NY, 10012, USA","institution_ids":["https://openalex.org/I36672615","https://openalex.org/I57206974"]},{"raw_affiliation_string":"Department of Chemistry, New York University, 100 Washington Square East, Room 1001, New York, NY, 10003, USA","institution_ids":["https://openalex.org/I57206974"]},{"raw_affiliation_string":"Courant Institute of Mathematical Sciences, New York University, New York, USA","institution_ids":["https://openalex.org/I36672615","https://openalex.org/I57206974"]},{"raw_affiliation_string":"Department of Chemistry, New York University, New York, USA","institution_ids":["https://openalex.org/I57206974"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5046513501"],"corresponding_institution_ids":["https://openalex.org/I36672615","https://openalex.org/I57206974"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":1.5892,"has_fulltext":true,"cited_by_count":75,"citation_normalized_percentile":{"value":0.80962368,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"5","issue":"1","first_page":"88","last_page":"88"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9264000058174133,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9264000058174133,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11445","display_name":"Origins and Evolution of Life","score":0.011800000444054604,"subfield":{"id":"https://openalex.org/subfields/3103","display_name":"Astronomy and Astrophysics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.005400000140070915,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.7840700149536133},{"id":"https://openalex.org/keywords/structural-motif","display_name":"Structural motif","score":0.5575361847877502},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5454538464546204},{"id":"https://openalex.org/keywords/non-coding-rna","display_name":"Non-coding RNA","score":0.49457618594169617},{"id":"https://openalex.org/keywords/intron","display_name":"Intron","score":0.4230264127254486},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3887372314929962},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3097144663333893},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.27274641394615173},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18660926818847656}],"concepts":[{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.7840700149536133},{"id":"https://openalex.org/C132677234","wikidata":"https://www.wikidata.org/wiki/Q3273544","display_name":"Structural motif","level":2,"score":0.5575361847877502},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5454538464546204},{"id":"https://openalex.org/C194993378","wikidata":"https://www.wikidata.org/wiki/Q427087","display_name":"Non-coding RNA","level":4,"score":0.49457618594169617},{"id":"https://openalex.org/C94671646","wikidata":"https://www.wikidata.org/wiki/Q207551","display_name":"Intron","level":3,"score":0.4230264127254486},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3887372314929962},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3097144663333893},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.27274641394615173},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18660926818847656},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-5-88","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-88","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-88","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15238163","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15238163","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:102922","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC471545","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:471545","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/471545","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:d838b0a9cace4548bf839fd07b4d9887","is_oa":true,"landing_page_url":"https://doaj.org/article/d838b0a9cace4548bf839fd07b4d9887","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 5, Iss 1, p 88 (2004)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-5-88","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-88","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-88","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3955686405","display_name":"Toward RNA Genomics: A Pilot Study in the Analysis, Design, and Prediction of RNA Structures","funder_award_id":"0201160","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6425629822","display_name":null,"funder_award_id":"DMS-0201160","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1625699506.pdf","grobid_xml":"https://content.openalex.org/works/W1625699506.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1493454437","https://openalex.org/W1519185585","https://openalex.org/W1542426682","https://openalex.org/W1964400019","https://openalex.org/W1984882637","https://openalex.org/W2003122343","https://openalex.org/W2073865971","https://openalex.org/W2075167911","https://openalex.org/W2096327663","https://openalex.org/W2103250001","https://openalex.org/W2108927984","https://openalex.org/W2117552736","https://openalex.org/W2121289117","https://openalex.org/W2135373808","https://openalex.org/W2142056356","https://openalex.org/W2149005864","https://openalex.org/W2151417892","https://openalex.org/W2158381555","https://openalex.org/W2172206224","https://openalex.org/W2773462233","https://openalex.org/W2799004609","https://openalex.org/W2999729612","https://openalex.org/W3021299718","https://openalex.org/W4213214460"],"related_works":["https://openalex.org/W1673034862","https://openalex.org/W2058984380","https://openalex.org/W1988125422","https://openalex.org/W2900182103","https://openalex.org/W3183769948","https://openalex.org/W3184762873","https://openalex.org/W2010385783","https://openalex.org/W4229003933","https://openalex.org/W2147128567","https://openalex.org/W2600828970"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,80],"proliferation":[2],"of":[3,8,15,22,25,35,123,126,132,137],"structural":[4,17,27,133],"and":[5,46,67,75,95,111,134,141],"functional":[6,135],"studies":[7],"RNA":[9,41,54,77,91,99,127,139],"has":[10],"revealed":[11],"an":[12,53],"increasing":[13],"range":[14],"RNA's":[16,26],"repertoire.":[18],"Toward":[19],"the":[20,33,144],"objective":[21],"systematic":[23],"cataloguing":[24,119],"repertoire,":[28],"we":[29],"have":[30],"recently":[31],"described":[32],"basis":[34],"a":[36,86],"graphical":[37],"approach":[38],"for":[39,63,146],"organizing":[40],"secondary":[42,78,128],"structures,":[43],"including":[44,72],"existing":[45],"hypothetical":[47],"motifs.":[48,79,153],"DESCRIPTION:":[49],"We":[50],"now":[51],"present":[52],"motif":[55],"database":[56],"based":[57,149],"on":[58,150],"graph":[59,106],"theory,":[60],"termed":[61],"RAG":[62],"RNA-As-Graphs,":[64],"to":[65,104],"catalogue":[66],"rank":[68],"all":[69,124],"theoretically":[70],"possible,":[71],"existing,":[73],"candidate":[74,81,152],"hypothetical,":[76],"motifs":[82,100],"are":[83,101],"predicted":[84,151],"using":[85],"clustering":[87],"algorithm":[88],"that":[89],"classifies":[90],"graphs":[92],"into":[93],"RNA-like":[94],"non-RNA":[96],"groups.":[97],"All":[98],"filed":[102],"according":[103],"their":[105],"vertex":[107],"number":[108],"(RNA":[109],"length)":[110],"ranked":[112],"by":[113],"topological":[114],"complexity.":[115],"CONCLUSIONS:":[116],"RAG's":[117],"quantitative":[118],"allows":[120],"facile":[121],"retrieval":[122],"classes":[125],"motifs,":[129],"assists":[130],"identification":[131],"properties":[136],"user-supplied":[138],"sequences,":[140],"helps":[142],"stimulate":[143],"search":[145],"novel":[147],"RNAs":[148]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
