{"id":"https://openalex.org/W2142938164","doi":"https://doi.org/10.1186/1471-2105-5-67","title":"Genome SEGE: A database for 'intronless' genes in eukaryotic genomes","display_name":"Genome SEGE: A database for 'intronless' genes in eukaryotic genomes","publication_year":2004,"publication_date":"2004-06-02","ids":{"openalex":"https://openalex.org/W2142938164","doi":"https://doi.org/10.1186/1471-2105-5-67","mag":"2142938164","pmid":"https://pubmed.ncbi.nlm.nih.gov/15175116"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-5-67","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-67","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-67","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-67","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043323519","display_name":"Meena Kishore Sakharkar","orcid":"https://orcid.org/0000-0002-9289-3314"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Meena Kishore Sakharkar","raw_affiliation_strings":["Nanyang Centre for Supercomputing and Visualization, School of Mechanical and Production Engineering, Nanyang Technological University, Singapore 639798. mmeena@ntu.edu.sg","Nanyang Centre for Supercomputing and Visualization, School of Mechanical and Production Engineering, Nanyang Technological University, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nanyang Centre for Supercomputing and Visualization, School of Mechanical and Production Engineering, Nanyang Technological University, Singapore 639798. mmeena@ntu.edu.sg","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Nanyang Centre for Supercomputing and Visualization, School of Mechanical and Production Engineering, Nanyang Technological University, Singapore","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087825593","display_name":"Pandjassarame Kangueane","orcid":"https://orcid.org/0000-0001-8978-4136"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Pandjassarame Kangueane","raw_affiliation_strings":["Nanyang Centre for Supercomputing and Visualization, School of Mechanical and Production Engineering, Nanyang Technological University, 639798, Singapore","Nanyang Centre for Supercomputing and Visualization, School of Mechanical and Production Engineering, Nanyang Technological University, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nanyang Centre for Supercomputing and Visualization, School of Mechanical and Production Engineering, Nanyang Technological University, 639798, Singapore","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Nanyang Centre for Supercomputing and Visualization, School of Mechanical and Production Engineering, Nanyang Technological University, Singapore","institution_ids":["https://openalex.org/I172675005"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5087825593"],"corresponding_institution_ids":["https://openalex.org/I172675005"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":2.0407,"has_fulltext":true,"cited_by_count":52,"citation_normalized_percentile":{"value":0.8630426,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"5","issue":"1","first_page":"67","last_page":"67"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.4884999990463257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.4884999990463257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.23919999599456787,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12610","display_name":"RNA regulation and disease","score":0.03310000151395798,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.8193036317825317},{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.8009078502655029},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6961953639984131},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6359619498252869},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5174458622932434},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.5164673328399658},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5049322247505188},{"id":"https://openalex.org/keywords/refseq","display_name":"RefSeq","score":0.49454137682914734},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4660443067550659},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3387332558631897},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.10160622000694275}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.8193036317825317},{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.8009078502655029},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6961953639984131},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6359619498252869},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5174458622932434},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.5164673328399658},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5049322247505188},{"id":"https://openalex.org/C151810110","wikidata":"https://www.wikidata.org/wiki/Q7307074","display_name":"RefSeq","level":4,"score":0.49454137682914734},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4660443067550659},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3387332558631897},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.10160622000694275}],"mesh":[{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007438","descriptor_name":"Introns","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007438","descriptor_name":"Introns","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007438","descriptor_name":"Introns","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-5-67","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-67","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-67","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15175116","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15175116","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:6008aafe14504aa98c5944f54ce3a354","is_oa":false,"landing_page_url":"https://doaj.org/article/6008aafe14504aa98c5944f54ce3a354","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 5, Iss 1, p 67 (2004)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:102788","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC434494","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:434494","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/434494","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-5-67","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-67","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-67","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.4000000059604645,"id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320335846","display_name":"Biomedical Research Council","ror":"https://ror.org/03xy0wx88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2142938164.pdf","grobid_xml":"https://content.openalex.org/works/W2142938164.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1544832590","https://openalex.org/W2007444724","https://openalex.org/W2012911917","https://openalex.org/W2028486645","https://openalex.org/W2033114461","https://openalex.org/W2044042298","https://openalex.org/W2046845850","https://openalex.org/W2098433852","https://openalex.org/W2108401170","https://openalex.org/W2117019496","https://openalex.org/W2127230663","https://openalex.org/W2143173841","https://openalex.org/W2165405562","https://openalex.org/W2165460636","https://openalex.org/W4239699228"],"related_works":["https://openalex.org/W2990171052","https://openalex.org/W3028206028","https://openalex.org/W3206675662","https://openalex.org/W4386774076","https://openalex.org/W3028050938","https://openalex.org/W2124685016","https://openalex.org/W2414506155","https://openalex.org/W2752117239","https://openalex.org/W1493660383","https://openalex.org/W2160142494"],"abstract_inverted_index":{"BACKGROUND:":[0],"A":[1,194],"number":[2],"of":[3,41,60,129,135,161,234],"completely":[4,95,108,125,222],"sequenced":[5,96,109,126,223],"eukaryotic":[6,42,110],"genome":[7,84,97,254],"data":[8,62,255],"are":[9,17,26,63,121,131,137,148],"available":[10,143,150,199,228],"in":[11,69,107,164,172,186,229,240],"the":[12,159,176,187,201,215,252],"public":[13],"domain.":[14],"Eukaryotic":[15,23,118],"genes":[16,25,45,106,120,163],"either":[18],"'intron":[19],"containing'":[20],"or":[21],"'intronless'.":[22],"'intronless'":[24,105,119,152,162,219],"interesting":[27],"datasets":[28,93,220],"for":[29,66,104,144,151,183,221,236,256],"comparative":[30,70,241],"genomics":[31,71,242],"and":[32,57,72,85,133,243,258],"evolutionary":[33,73,244],"studies.":[34,74,245],"The":[35,54,139,154,205],"SEGE":[36,49,211,213],"database":[37,103,155,188,231],"containing":[38],"a":[39,64,102],"collection":[40],"single":[43],"exon":[44],"is":[46,50,87,142,197,214],"available.":[47],"However,":[48],"derived":[51],"using":[52],"GenBank.":[53],"redundant,":[55],"incomplete":[56],"heterogeneous":[58],"qualities":[59],"GenBank":[61],"bottleneck":[65],"biological":[67],"investigation":[68],"Such":[75,246],"studies":[76],"often":[77],"require":[78],"representative":[79,218],"gene":[80,226],"sets":[81,227],"from":[82,94,123,212],"each":[83,173,184],"this":[86,230],"possible":[88],"only":[89],"by":[90],"deriving":[91],"specific":[92],"data.":[98],"Thus":[99],"Genome":[100,210],"SEGE,":[101],"genomes,":[111],"has":[112],"been":[113],"constructed.":[114],"AVAILABILITY:":[115],"http://sege.ntu.edu.sg/wester/intronless":[116],"DESCRIPTION:":[117],"extracted":[122],"nine":[124],"genomes":[127,166],"(four":[128],"which":[130,136],"unicellular":[132],"five":[134],"multi-cellular).":[138],"complete":[140],"dataset":[141],"download.":[145],"Data":[146],"subsets":[147],"also":[149,198],"pseudo-genes.":[153],"provides":[156,179],"information":[157],"on":[158],"distribution":[160],"different":[165],"together":[167],"with":[168,189],"their":[169],"length":[170],"distributions":[171],"genome.":[174],"Additionally,":[175],"search":[177,195],"tool":[178],"pre-computed":[180],"PROSITE":[181],"motifs":[182],"sequence":[185],"appropriate":[190],"hyperlinks":[191],"to":[192,250],"InterPro.":[193],"facility":[196],"through":[200],"web":[202],"server.":[203],"CONCLUSIONS:":[204],"unique":[206],"features":[207],"that":[208],"distinguish":[209],"service":[216],"providing":[217],"genomes.":[224],"'Intronless'":[225],"will":[232],"be":[233],"use":[235],"subsequent":[237],"bio-computational":[238],"analysis":[239,247],"may":[248],"help":[249],"revisit":[251],"original":[253],"re-examination":[257],"re-annotation.":[259]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
