{"id":"https://openalex.org/W2138195246","doi":"https://doi.org/10.1186/1471-2105-5-55","title":"eL-DASionator: an LDAS upload file generator","display_name":"eL-DASionator: an LDAS upload file generator","publication_year":2004,"publication_date":"2004-05-07","ids":{"openalex":"https://openalex.org/W2138195246","doi":"https://doi.org/10.1186/1471-2105-5-55","mag":"2138195246","pmid":"https://pubmed.ncbi.nlm.nih.gov/15132760"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-5-55","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-55","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-55","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-55","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083930386","display_name":"Vincent N\u00e8gre","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210163339","display_name":"Institut de G\u00e9n\u00e9tique Humaine","ror":"https://ror.org/05ee10k25","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210096427","https://openalex.org/I4210163339"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Vincent Negre","raw_affiliation_strings":["Institut de G\u00e9n\u00e9tique Humaine, CNRS UPR 1142, 141 rue de la Cardonille, 34396 Montpellier, France. developer@methdb.net","Institut de g\u00e9n\u00e9tique humaine (CNRS UPR 1142), Montpellier, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut de G\u00e9n\u00e9tique Humaine, CNRS UPR 1142, 141 rue de la Cardonille, 34396 Montpellier, France. developer@methdb.net","institution_ids":["https://openalex.org/I4210163339","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Institut de g\u00e9n\u00e9tique humaine (CNRS UPR 1142), Montpellier, France","institution_ids":["https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049390487","display_name":"Christoph Grunau","orcid":"https://orcid.org/0000-0002-2161-412X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210163339","display_name":"Institut de G\u00e9n\u00e9tique Humaine","ror":"https://ror.org/05ee10k25","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210096427","https://openalex.org/I4210163339"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Christoph Grunau","raw_affiliation_strings":["Institut de G\u00e9n\u00e9tique Humaine, CNRS UPR 1142, 141 rue de la Cardonille, 34396, Montpellier, France","Institut de g\u00e9n\u00e9tique humaine (CNRS UPR 1142), Montpellier, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut de G\u00e9n\u00e9tique Humaine, CNRS UPR 1142, 141 rue de la Cardonille, 34396, Montpellier, France","institution_ids":["https://openalex.org/I4210163339","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Institut de g\u00e9n\u00e9tique humaine (CNRS UPR 1142), Montpellier, France","institution_ids":["https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5049390487"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210163339"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.1206,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.4991806,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"5","issue":"1","first_page":"55","last_page":"55"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.17880000174045563,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.17880000174045563,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.17170000076293945,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.06300000101327896,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6892633438110352},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6478780508041382},{"id":"https://openalex.org/keywords/generator","display_name":"Generator (circuit theory)","score":0.4547403156757355},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.4247281551361084},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3392995595932007},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3391292095184326},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3085850477218628},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22948899865150452}],"concepts":[{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6892633438110352},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6478780508041382},{"id":"https://openalex.org/C2780992000","wikidata":"https://www.wikidata.org/wiki/Q17016113","display_name":"Generator (circuit theory)","level":3,"score":0.4547403156757355},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.4247281551361084},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3392995595932007},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3391292095184326},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3085850477218628},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22948899865150452},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-5-55","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-55","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-55","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15132760","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15132760","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:241885e5b2234663ac7f587fd2b19638","is_oa":true,"landing_page_url":"https://doaj.org/article/241885e5b2234663ac7f587fd2b19638","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 5, Iss 1, p 55 (2004)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:416658","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/416658","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-5-55","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-55","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-55","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4099999964237213,"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2138195246.pdf","grobid_xml":"https://content.openalex.org/works/W2138195246.grobid-xml"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W2028170564","https://openalex.org/W2042545888","https://openalex.org/W2055043387","https://openalex.org/W2131581981","https://openalex.org/W2158304452"],"related_works":["https://openalex.org/W2944823289","https://openalex.org/W3037018281","https://openalex.org/W2972592048","https://openalex.org/W2358319515","https://openalex.org/W4321854979","https://openalex.org/W2003209439","https://openalex.org/W2497626292","https://openalex.org/W4312214821","https://openalex.org/W4361862506","https://openalex.org/W2951882034"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,55,154],"Distributed":[2],"Annotation":[3],"System":[4],"(DAS)":[5],"allows":[6],"merging":[7],"of":[8,41,69,99,111,119,191],"DNA":[9,97],"sequence":[10,121],"annotations":[11,43,182],"from":[12],"multiple":[13],"sources":[14],"and":[15,67,116,126,176],"provides":[16],"a":[17,26,52,83,90,129,184],"single":[18],"annotation":[19,28,131,142],"view.":[20],"A":[21],"straightforward":[22],"way":[23],"to":[24,31,75,107,138,149,180],"establish":[25],"DAS":[27],"server":[29,36,143],"is":[30,87,156,161],"use":[32],"the":[33,60,64,108,123,150],"\"Lightweight":[34],"DAS\"":[35],"(LDAS).":[37],"Onto":[38],"this":[39,192],"type":[40],"server,":[42],"can":[44,94,135,146],"be":[45,136,147],"uploaded":[46,148],"as":[47],"flat":[48],"text":[49],"files":[50,80],"in":[51,183],"defined":[53],"format.":[54],"popular":[56],"Ensembl":[57,151],"ContigView":[58],"uses":[59],"same":[61],"format":[62,186],"for":[63,163],"transient":[65],"upload":[66,79,174],"display":[68],"user":[70],"data.":[71,193],"RESULTS:":[72],"In":[73],"order":[74],"easily":[76],"generate":[77,181],"LDAS":[78,141,173],"we":[81],"developed":[82],"software":[84],"tool":[85,159],"that":[86,160,187],"accessible":[88],"via":[89],"web-interface":[91],"http://atgc.lirmm.fr/eldasionator.html.":[92],"Users":[93],"submit":[95],"their":[96],"sequences":[98,106,110],"interest.":[100],"Our":[101],"program":[102],"(i)":[103],"aligns":[104],"these":[105],"reference":[109,124],"Ensembl,":[112],"(ii)":[113],"determines":[114],"start":[115],"end":[117],"positions":[118],"each":[120],"on":[122],"sequence,":[125],"(iii)":[127],"generates":[128,172],"formatted":[130],"file.":[132],"This":[133],"file":[134],"used":[137],"load":[139],"any":[140],"or":[144],"it":[145,178],"ContigView.":[152],"CONCLUSION:":[153],"eL-DASionator":[155],"an":[157],"on-line":[158],"intended":[162],"life-science":[164],"researchers":[165],"with":[166],"little":[167],"bioinformatics":[168],"background.":[169],"It":[170],"conveniently":[171],"files,":[175],"makes":[177],"possible":[179],"standard":[185],"permits":[188],"comfortable":[189],"sharing":[190]},"counts_by_year":[],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}