{"id":"https://openalex.org/W1868795664","doi":"https://doi.org/10.1186/1471-2105-5-41","title":"No statistical support for correlation between the positions of protein interaction sites and alternatively spliced regions","display_name":"No statistical support for correlation between the positions of protein interaction sites and alternatively spliced regions","publication_year":2004,"publication_date":"2004-04-19","ids":{"openalex":"https://openalex.org/W1868795664","doi":"https://doi.org/10.1186/1471-2105-5-41","mag":"1868795664","pmid":"https://pubmed.ncbi.nlm.nih.gov/15096275"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-5-41","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-41","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-41","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-41","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030137174","display_name":"Marc N. Offman","orcid":null},"institutions":[{"id":"https://openalex.org/I309496635","display_name":"Weihenstephan-Triesdorf University of Applied Sciences","ror":"https://ror.org/00gzkxz88","country_code":"DE","type":"education","lineage":["https://openalex.org/I309496635"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marc N Offman","raw_affiliation_strings":["Department of Genome Oriented Bioinformatics, Technical University of Munich, Wissenschaftszentrum Weihenstephan, 85350 Freising, Germany. offman@in.tum.de","Department of Genome Oriented Bioinformatics, Technical University of Munich, Wissenschaftszentrum Weihenstephan, 85350, Freising, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genome Oriented Bioinformatics, Technical University of Munich, Wissenschaftszentrum Weihenstephan, 85350 Freising, Germany. offman@in.tum.de","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Department of Genome Oriented Bioinformatics, Technical University of Munich, Wissenschaftszentrum Weihenstephan, 85350, Freising, Germany","institution_ids":["https://openalex.org/I309496635","https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056443509","display_name":"Ramil Nurtdinov","orcid":"https://orcid.org/0000-0002-9753-6287"},"institutions":[{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Ramil N Nurtdinov","raw_affiliation_strings":["Department of Bioengineering and Bioinformatics, Moscow State University, Lab. Bldg. B, Leninskie Gory 1-73, Moscow, 119992, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering and Bioinformatics, Moscow State University, Lab. Bldg. B, Leninskie Gory 1-73, Moscow, 119992, Russia","institution_ids":["https://openalex.org/I19880235"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016957787","display_name":"Mikhail S. Gelfand","orcid":"https://orcid.org/0000-0003-4181-0846"},"institutions":[{"id":"https://openalex.org/I4210090610","display_name":"State Scientific Center of Coloproctology","ror":"https://ror.org/00c5s4m23","country_code":"RU","type":"healthcare","lineage":["https://openalex.org/I4210090610"]},{"id":"https://openalex.org/I4210107660","display_name":"Institute for Information Transmission Problems","ror":"https://ror.org/013w2d378","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210107660"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Mikhail S Gelfand","raw_affiliation_strings":["Institute for Problems of Information Transmission, Russian Academy of Sciences, Bolshoy Karetny per. 19, Moscow, 127994, Russia","State Scientific Center GosNIIGenetika, 1st Dorozhny pr. 1, Moscow, 117545, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Problems of Information Transmission, Russian Academy of Sciences, Bolshoy Karetny per. 19, Moscow, 127994, Russia","institution_ids":["https://openalex.org/I4210107660"]},{"raw_affiliation_string":"State Scientific Center GosNIIGenetika, 1st Dorozhny pr. 1, Moscow, 117545, Russia","institution_ids":["https://openalex.org/I4210090610"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060795824","display_name":"Dmitrij Frishman","orcid":"https://orcid.org/0000-0002-9006-4707"},"institutions":[{"id":"https://openalex.org/I309496635","display_name":"Weihenstephan-Triesdorf University of Applied Sciences","ror":"https://ror.org/00gzkxz88","country_code":"DE","type":"education","lineage":["https://openalex.org/I309496635"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Dmitrij Frishman","raw_affiliation_strings":["Department of Genome Oriented Bioinformatics, Technical University of Munich, Wissenschaftszentrum Weihenstephan, 85350, Freising, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genome Oriented Bioinformatics, Technical University of Munich, Wissenschaftszentrum Weihenstephan, 85350, Freising, Germany","institution_ids":["https://openalex.org/I309496635","https://openalex.org/I62916508"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5060795824"],"corresponding_institution_ids":["https://openalex.org/I309496635","https://openalex.org/I62916508"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.7235,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.66614915,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"5","issue":"1","first_page":"41","last_page":"41"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.296099990606308,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.296099990606308,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.15880000591278076,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.08150000125169754,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/alternative-splicing","display_name":"Alternative splicing","score":0.6994032263755798},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5810409784317017},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.5730804800987244},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5636969804763794},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.4879316985607147},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4705260992050171},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4683648347854614},{"id":"https://openalex.org/keywords/protein-domain","display_name":"Protein domain","score":0.4601941406726837},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.45943257212638855},{"id":"https://openalex.org/keywords/gene-isoform","display_name":"Gene isoform","score":0.4559183716773987},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.42225849628448486},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.42107194662094116},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.3503328263759613},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15864425897598267},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.09543934464454651},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.07751351594924927}],"concepts":[{"id":"https://openalex.org/C194583182","wikidata":"https://www.wikidata.org/wiki/Q21114084","display_name":"Alternative splicing","level":4,"score":0.6994032263755798},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5810409784317017},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.5730804800987244},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5636969804763794},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.4879316985607147},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4705260992050171},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4683648347854614},{"id":"https://openalex.org/C144292202","wikidata":"https://www.wikidata.org/wiki/Q898273","display_name":"Protein domain","level":3,"score":0.4601941406726837},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.45943257212638855},{"id":"https://openalex.org/C53345823","wikidata":"https://www.wikidata.org/wiki/Q5531554","display_name":"Gene isoform","level":3,"score":0.4559183716773987},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.42225849628448486},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.42107194662094116},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.3503328263759613},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15864425897598267},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.09543934464454651},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.07751351594924927}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005136","descriptor_name":"Eye Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005136","descriptor_name":"Eye Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005136","descriptor_name":"Eye Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005136","descriptor_name":"Eye Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020555","descriptor_name":"GTP-Binding Protein Regulators","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020555","descriptor_name":"GTP-Binding Protein Regulators","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020555","descriptor_name":"GTP-Binding Protein Regulators","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020555","descriptor_name":"GTP-Binding Protein Regulators","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020742","descriptor_name":"rhoA GTP-Binding Protein","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020742","descriptor_name":"rhoA GTP-Binding Protein","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020742","descriptor_name":"rhoA GTP-Binding Protein","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020742","descriptor_name":"rhoA GTP-Binding Protein","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020836","descriptor_name":"Protein Structure, Quaternary","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020836","descriptor_name":"Protein Structure, Quaternary","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020836","descriptor_name":"Protein Structure, Quaternary","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020836","descriptor_name":"Protein Structure, Quaternary","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D028961","descriptor_name":"beta Karyopherins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D028961","descriptor_name":"beta Karyopherins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D028961","descriptor_name":"beta Karyopherins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D028961","descriptor_name":"beta Karyopherins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D042846","descriptor_name":"CDC2-CDC28 Kinases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D042846","descriptor_name":"CDC2-CDC28 Kinases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D042846","descriptor_name":"CDC2-CDC28 Kinases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D042846","descriptor_name":"CDC2-CDC28 Kinases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D051357","descriptor_name":"Cyclin-Dependent Kinase 2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051357","descriptor_name":"Cyclin-Dependent Kinase 2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051357","descriptor_name":"Cyclin-Dependent Kinase 2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051357","descriptor_name":"Cyclin-Dependent Kinase 2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-5-41","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-41","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-41","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15096275","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15096275","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:60d4ed6d5f504595bb55dd2a153a833f","is_oa":true,"landing_page_url":"https://doaj.org/article/60d4ed6d5f504595bb55dd2a153a833f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 5, Iss 1, p 41 (2004)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:102675","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC419334","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:419334","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/419334","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-5-41","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-41","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-41","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306082","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90"},{"id":"https://openalex.org/F4320334801","display_name":"Russian Academy of Sciences","ror":"https://ror.org/05qrfxd25"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1868795664.pdf","grobid_xml":"https://content.openalex.org/works/W1868795664.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1963793607","https://openalex.org/W1969939692","https://openalex.org/W1994154030","https://openalex.org/W1999399446","https://openalex.org/W2002199416","https://openalex.org/W2013340095","https://openalex.org/W2028279880","https://openalex.org/W2028540122","https://openalex.org/W2033310094","https://openalex.org/W2043647387","https://openalex.org/W2047544230","https://openalex.org/W2055043387","https://openalex.org/W2063176993","https://openalex.org/W2067415570","https://openalex.org/W2067501355","https://openalex.org/W2078302553","https://openalex.org/W2084494997","https://openalex.org/W2090612802","https://openalex.org/W2103619713","https://openalex.org/W2113267877","https://openalex.org/W2114049512","https://openalex.org/W2130368032","https://openalex.org/W2130479394","https://openalex.org/W2139455449","https://openalex.org/W2155853199","https://openalex.org/W2168909179","https://openalex.org/W2169361401","https://openalex.org/W2297165308","https://openalex.org/W2413424377"],"related_works":["https://openalex.org/W1965444063","https://openalex.org/W2081495471","https://openalex.org/W2045131140","https://openalex.org/W2001319824","https://openalex.org/W2010825547","https://openalex.org/W2914490533","https://openalex.org/W2135103820","https://openalex.org/W4253826539","https://openalex.org/W1963793607","https://openalex.org/W2095910716"],"abstract_inverted_index":{"BACKGROUND:":[0],"Alternative":[1],"splicing":[2,49,172,209],"is":[3,50,190],"an":[4,66],"efficient":[5],"mechanism":[6],"for":[7,165],"increasing":[8],"the":[9,45,81,135,175,179,194,200],"variety":[10,119],"of":[11,39,55,74,83,97,120,137,160,178,197,202,215,224,229],"functions":[12],"fulfilled":[13],"by":[14,88,193,207],"proteins":[15,216],"in":[16,63,104,110,199],"a":[17,118,130,149,183],"living":[18],"cell.":[19],"It":[20],"has":[21],"been":[22],"previously":[23],"demonstrated":[24],"that":[25,47,152,166,169],"alternatively":[26,84,99,142,153],"spliced":[27,85,93,100,143,154],"regions":[28,54,86,155,205],"often":[29],"comprise":[30],"functionally":[31],"important":[32],"and":[33,78,92,117,141,210],"conserved":[34],"sequence":[35,60],"motifs.":[36],"The":[37,95],"objective":[38],"this":[40,114,236],"work":[41],"was":[42],"to":[43,128,182,186,234],"test":[44,235],"hypothesis":[46,151],"alternative":[48,171,208,230],"correlated":[51],"with":[52,65,80,158],"contact":[53],"protein-protein":[56],"interactions.":[57,112],"RESULTS:":[58],"Protein":[59],"spans":[61],"involved":[62,109],"contacts":[64],"interaction":[67,76,139],"partner":[68],"were":[69,102,125],"delineated":[70],"from":[71],"atomic":[72],"structures":[73,228],"transient":[75],"complexes":[77,223],"juxtaposed":[79],"location":[82],"detected":[87],"comparative":[89],"genome":[90],"analysis":[91],"alignment.":[94],"total":[96],"42":[98],"isoforms":[101],"identified":[103],"21":[105],"amino":[106],"acid":[107],"chains":[108],"biomolecular":[111],"Using":[113],"limited":[115],"dataset":[116],"sophisticated":[121],"counting":[122],"procedures":[123],"we":[124],"not":[126],"able":[127],"establish":[129],"statistically":[131],"significant":[132],"correlation":[133],"between":[134],"positions":[136],"protein":[138],"sites":[140],"regions.":[144],"CONCLUSIONS:":[145],"This":[146,189],"finding":[147],"contradicts":[148],"na\u00efve":[150],"would":[156],"correlate":[157],"points":[159],"contact.":[161],"One":[162],"possible":[163],"explanation":[164],"could":[167],"be":[168],"all":[170],"events":[173],"change":[174],"spatial":[176],"structure":[177],"interacting":[180,225],"domain":[181],"sufficient":[184],"degree":[185],"preclude":[187],"interaction.":[188],"indirectly":[191],"supported":[192],"observed":[195],"lack":[196],"difference":[198],"behaviour":[201],"relatively":[203],"short":[204],"affected":[206],"cases":[211],"when":[212],"large":[213],"portions":[214],"are":[217,232],"removed.":[218],"More":[219],"structural":[220],"data":[221],"on":[222],"proteins,":[226],"including":[227],"isoforms,":[231],"needed":[233],"conjecture.":[237]},"counts_by_year":[{"year":2013,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
