{"id":"https://openalex.org/W2128562871","doi":"https://doi.org/10.1186/1471-2105-5-25","title":"A web services choreography scenario for interoperating bioinformatics applications","display_name":"A web services choreography scenario for interoperating bioinformatics applications","publication_year":2004,"publication_date":"2004-03-10","ids":{"openalex":"https://openalex.org/W2128562871","doi":"https://doi.org/10.1186/1471-2105-5-25","mag":"2128562871","pmid":"https://pubmed.ncbi.nlm.nih.gov/15113410"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-5-25","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-25","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-25","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-25","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005680333","display_name":"Remko de Knikker","orcid":null},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Remko de Knikker","raw_affiliation_strings":["Center for Medical Informatics, Department of Anesthesiology, Yale University School of Medicine, PO Box 208009, New Haven, CT 06520, USA. remkodeknikker@hotmail.com","Center for Medical Informatics, Department of Anesthesiology, Yale University School of Medicine, PO Box 208009, New Haven, CT, 06520, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Medical Informatics, Department of Anesthesiology, Yale University School of Medicine, PO Box 208009, New Haven, CT 06520, USA. remkodeknikker@hotmail.com","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"Center for Medical Informatics, Department of Anesthesiology, Yale University School of Medicine, PO Box 208009, New Haven, CT, 06520, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059272000","display_name":"Youjun Guo","orcid":"https://orcid.org/0000-0001-7073-0410"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Youjun Guo","raw_affiliation_strings":["Center for Medical Informatics, Department of Anesthesiology, Yale University School of Medicine, PO Box 208009, New Haven, CT, 06520, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Medical Informatics, Department of Anesthesiology, Yale University School of Medicine, PO Box 208009, New Haven, CT, 06520, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100454987","display_name":"Jinlong Li","orcid":"https://orcid.org/0000-0003-0276-8796"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jin-long Li","raw_affiliation_strings":["Center for Medical Informatics, Department of Anesthesiology, Yale University School of Medicine, PO Box 208009, New Haven, CT, 06520, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Medical Informatics, Department of Anesthesiology, Yale University School of Medicine, PO Box 208009, New Haven, CT, 06520, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109228934","display_name":"A Kwan","orcid":null},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Albert KH Kwan","raw_affiliation_strings":["Department of Computer Science and Information Systems, University of Hong Kong, Pokfulam Road, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Systems, University of Hong Kong, Pokfulam Road, Hong Kong","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066417693","display_name":"Kevin Y. Yip","orcid":"https://orcid.org/0000-0001-5516-9944"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Kevin Y Yip","raw_affiliation_strings":["Department of Computer Science and Information Systems, University of Hong Kong, Pokfulam Road, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Systems, University of Hong Kong, Pokfulam Road, Hong Kong","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030458470","display_name":"David W. Cheung","orcid":"https://orcid.org/0000-0002-8343-8440"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"David W Cheung","raw_affiliation_strings":["Department of Computer Science and Information Systems, University of Hong Kong, Pokfulam Road, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Systems, University of Hong Kong, Pokfulam Road, Hong Kong","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110209950","display_name":"Kei\u2010Hoi Cheung","orcid":null},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kei-Hoi Cheung","raw_affiliation_strings":["Center for Medical Informatics, Department of Anesthesiology, Yale University School of Medicine, PO Box 208009, New Haven, CT, 06520, USA","Department of Genetics, Yale University School of Medicine, PO Box 208005, New Haven, CT, 06520, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Medical Informatics, Department of Anesthesiology, Yale University School of Medicine, PO Box 208009, New Haven, CT, 06520, USA","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"Department of Genetics, Yale University School of Medicine, PO Box 208005, New Haven, CT, 06520, USA","institution_ids":["https://openalex.org/I32971472"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5110209950"],"corresponding_institution_ids":["https://openalex.org/I32971472"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2790},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2790},"fwci":1.5871,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.81964912,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"5","issue":"1","first_page":"25","last_page":"25"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.4765999913215637,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.4765999913215637,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.18359999358654022,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.07240000367164612,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8334625959396362},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.6866629123687744},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.532082736492157},{"id":"https://openalex.org/keywords/soap","display_name":"SOAP","score":0.5033990740776062},{"id":"https://openalex.org/keywords/web-modeling","display_name":"Web modeling","score":0.4827934503555298},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.48128265142440796},{"id":"https://openalex.org/keywords/interoperation","display_name":"Interoperation","score":0.478208065032959},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.44564521312713623},{"id":"https://openalex.org/keywords/data-web","display_name":"Data Web","score":0.43943464756011963},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.41059610247612},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3869222402572632},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.24037334322929382}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8334625959396362},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.6866629123687744},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.532082736492157},{"id":"https://openalex.org/C17881449","wikidata":"https://www.wikidata.org/wiki/Q189620","display_name":"SOAP","level":2,"score":0.5033990740776062},{"id":"https://openalex.org/C130436687","wikidata":"https://www.wikidata.org/wiki/Q7978591","display_name":"Web modeling","level":3,"score":0.4827934503555298},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.48128265142440796},{"id":"https://openalex.org/C139458680","wikidata":"https://www.wikidata.org/wiki/Q12184942","display_name":"Interoperation","level":3,"score":0.478208065032959},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.44564521312713623},{"id":"https://openalex.org/C162005631","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Data Web","level":3,"score":0.43943464756011963},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.41059610247612},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3869222402572632},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.24037334322929382}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-5-25","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-25","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-25","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15113410","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15113410","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:25dbf64b1e6d487db7e64f00c5af02b5","is_oa":true,"landing_page_url":"https://doaj.org/article/25dbf64b1e6d487db7e64f00c5af02b5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 5, Iss 1, p 25 (2004)","raw_type":"article"},{"id":"pmh:oai:hub.hku.hk:10722/43671","is_oa":false,"landing_page_url":"http://hdl.handle.net/10722/43671","pdf_url":null,"source":{"id":"https://openalex.org/S4377196271","display_name":"The HKU Scholars Hub (University of Hong Kong)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I889458895","host_organization_name":"University of Hong Kong","host_organization_lineage":["https://openalex.org/I889458895"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:394315","is_oa":true,"landing_page_url":"http://doi.org/10.1186/1471-2105-5-25","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-5-25","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-25","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-25","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.550000011920929,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G2574865383","display_name":null,"funder_award_id":"K25 HG02378","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G2689026750","display_name":null,"funder_award_id":"K25 HG002378","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G3844385788","display_name":"Exploring Approaches for Microarray Databases That Enable Flexible Design and Integrative Analysis","funder_award_id":"0135442","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320313288","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332603","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2128562871.pdf","grobid_xml":"https://content.openalex.org/works/W2128562871.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1239375374","https://openalex.org/W1486283310","https://openalex.org/W1996902131","https://openalex.org/W2045340002","https://openalex.org/W2054251921","https://openalex.org/W2100702185","https://openalex.org/W2107523227","https://openalex.org/W2116155802","https://openalex.org/W2166667584","https://openalex.org/W2197056051"],"related_works":["https://openalex.org/W2371332745","https://openalex.org/W2400131657","https://openalex.org/W2377642117","https://openalex.org/W841372248","https://openalex.org/W2357076788","https://openalex.org/W2361932324","https://openalex.org/W2246426672","https://openalex.org/W2958990022","https://openalex.org/W2391424449","https://openalex.org/W2385148056"],"abstract_inverted_index":{"BACKGROUND:":[0],"Very":[1],"often":[2,86],"genome-wide":[3],"data":[4,61],"analysis":[5,148],"requires":[6],"the":[7,27,38,42,116,128,140,152,171,195,207,227,243,267,318,342,357,380,391],"interoperation":[8,35],"of":[9,18,120,130,143,154,163,167,179,189,229,237,269,320,344,359],"multiple":[10],"databases":[11,20],"and":[12,21,63,75,78,118,185,197,281,293,314,333,398],"analytic":[13],"tools.":[14],"A":[15],"large":[16],"number":[17],"genome":[19],"bioinformatics":[22,353],"applications":[23,43,221],"are":[24,45,85,256],"available":[25,361],"through":[26],"web,":[28],"but":[29],"it":[30,216,308,365],"is":[31,51,198,210,217,309,325,339,366],"difficult":[32,218],"to":[33,71,114,194,214,222,266,312,350,356,370],"automate":[34],"because:":[36],"1)":[37],"platforms":[39],"on":[40,170],"which":[41,252],"run":[44],"heterogeneous,":[46],"2)":[47],"their":[48],"web":[49,93,122,132,136,239,247,290,297,301,316,321,336,348,362,388],"interface":[50,74],"not":[52,68,87],"machine-friendly,":[53],"3)":[54],"they":[55,66],"use":[56,249,319],"a":[57,98,121,145,177,187,235,273,289,300,372,383,396],"non-standard":[58],"format":[59],"for":[60,82,102,212,219,335],"input":[62,184,196],"output,":[64],"4)":[65],"do":[67],"exploit":[69],"standards":[70,338],"define":[72],"application":[73],"message":[76,103],"exchange,":[77],"5)":[79],"existing":[80],"protocols":[81],"remote":[83],"messaging":[84],"firewall-friendly.":[88],"To":[89,126,225],"overcome":[90],"these":[91,296],"issues,":[92],"services":[94,109,123,133,240,248,291,298,302,322,337,349,363],"have":[95,111,233],"emerged":[96],"as":[97,183,288,382],"standard":[99],"XML-based":[100,260,271,375,405],"model":[101],"exchange":[104],"between":[105],"heterogeneous":[106,352],"applications.":[107,354],"Web":[108],"engines":[110,324],"been":[112],"developed":[113,150],"manage":[115],"configuration":[117,397],"execution":[119],"workflow.":[124,406],"RESULTS:":[125],"demonstrate":[127],"benefit":[129],"using":[131,299,347],"over":[134],"traditional":[135],"interfaces,":[137],"we":[138,232],"compare":[139],"two":[141],"implementations":[142],"HAPI,":[144],"gene":[146],"expression":[147],"utility":[149,175],"by":[151,200,377],"University":[153],"California":[155],"San":[156],"Diego":[157],"(UCSD)":[158],"that":[159,192,241,254,401],"allows":[160],"visual":[161],"characterization":[162],"groups":[164],"or":[165],"clusters":[166],"genes":[168],"based":[169],"biomedical":[172],"literature.":[173],"This":[174],"takes":[176],"set":[178],"microarray":[180],"spot":[181],"IDs":[182],"outputs":[186],"hierarchy":[188],"MeSH":[190],"Keywords":[191],"correlates":[193],"grouped":[199],"Medical":[201],"Subject":[202],"Heading":[203],"(MeSH)":[204],"category.":[205],"While":[206,307],"HTML":[208],"output":[209],"easy":[211],"humans":[213],"visualize,":[215],"computer":[220],"interpret":[223],"semantically.":[224],"facilitate":[226],"capability":[228],"machine":[230],"processing,":[231],"created":[234],"workflow":[236,376,381],"three":[238,264],"replicates":[242],"HAPI":[244],"functionality.":[245],"These":[246],"document-style":[250],"messages,":[251],"means":[253],"messages":[255],"encoded":[257],"in":[258,327,346],"an":[259,270],"format.":[261],"We":[262],"compared":[263],"approaches":[265],"implementation":[268],"workflow:":[272],"hard":[274,378],"coded":[275],"Java":[276,285,384],"application,":[277],"Collaxa":[278,392],"BPEL":[279,393],"Server":[280],"Taverna":[282],"Workbench.":[283],"The":[284],"program":[286],"functions":[287],"engine":[292,394],"interoperates":[294],"with":[295],"choreography":[303,323],"language":[304],"(BPEL4WS).":[305],"CONCLUSION:":[306],"relatively":[310],"straightforward":[311],"implement":[313,371],"publish":[315],"services,":[317],"still":[326,367],"its":[328],"infancy.":[329],"However,":[330],"industry-wide":[331],"support":[332],"push":[334],"quickly":[340],"increasing":[341],"chance":[343],"success":[345],"unify":[351],"Due":[355],"immaturity":[358],"currently":[360],"engines,":[364],"most":[368],"practical":[369],"simple,":[373],"ad-hoc":[374],"coding":[379],"application.":[385],"For":[386],"advanced":[387],"service":[389],"users":[390],"facilitates":[395],"management":[399],"environment":[400],"can":[402],"fully":[403],"handle":[404]},"counts_by_year":[{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
