{"id":"https://openalex.org/W2123493534","doi":"https://doi.org/10.1186/1471-2105-5-19","title":"The tissue microarray data exchange specification: implementation by the Cooperative Prostate Cancer Tissue Resource","display_name":"The tissue microarray data exchange specification: implementation by the Cooperative Prostate Cancer Tissue Resource","publication_year":2004,"publication_date":"2004-02-27","ids":{"openalex":"https://openalex.org/W2123493534","doi":"https://doi.org/10.1186/1471-2105-5-19","mag":"2123493534","pmid":"https://pubmed.ncbi.nlm.nih.gov/15040818"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-5-19","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-19","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-19","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-19","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064983883","display_name":"Jules J. Berman","orcid":null},"institutions":[{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jules J Berman","raw_affiliation_strings":["Cancer Diagnosis Program, National Cancer Institute, National Institutes of Health, Bethesda, USA. bermanj@mail.nih.gov","Cancer Diagnosis Program, National Cancer Institute, National Institutes of Health, Bethesda, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Diagnosis Program, National Cancer Institute, National Institutes of Health, Bethesda, USA. bermanj@mail.nih.gov","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210140884"]},{"raw_affiliation_string":"Cancer Diagnosis Program, National Cancer Institute, National Institutes of Health, Bethesda, USA","institution_ids":["https://openalex.org/I4210140884","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080342341","display_name":"Milton W. Datta","orcid":null},"institutions":[{"id":"https://openalex.org/I43579087","display_name":"University of Wisconsin\u2013Milwaukee","ror":"https://ror.org/031q21x57","country_code":"US","type":"education","lineage":["https://openalex.org/I43579087"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Milton Datta","raw_affiliation_strings":["Department of Pathology, University of Wisconsin, Milwaukee, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, University of Wisconsin, Milwaukee, USA","institution_ids":["https://openalex.org/I43579087"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082851014","display_name":"Andre Kajdacsy\u2010Balla","orcid":"https://orcid.org/0000-0001-8699-762X"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andre Kajdacsy-Balla","raw_affiliation_strings":["Department of Pathology, University of Illinois Medical Center, Chicago, USA","Department of Pathology, University of Illinois Medical Center Chicago, , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, University of Illinois Medical Center, Chicago, USA","institution_ids":["https://openalex.org/I39422238"]},{"raw_affiliation_string":"Department of Pathology, University of Illinois Medical Center Chicago, , USA","institution_ids":["https://openalex.org/I157725225","https://openalex.org/I39422238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011447518","display_name":"Jonathan Melamed","orcid":"https://orcid.org/0000-0003-2844-7990"},"institutions":[{"id":"https://openalex.org/I181190671","display_name":"New York Medical College","ror":"https://ror.org/03dkvy735","country_code":"US","type":"education","lineage":["https://openalex.org/I181190671"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jonathan Melamed","raw_affiliation_strings":["Department of Pathology, New York Medical Center, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, New York Medical Center, New York, USA","institution_ids":["https://openalex.org/I181190671"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110915402","display_name":"Jan M. Orenstein","orcid":null},"institutions":[{"id":"https://openalex.org/I4210135078","display_name":"Washington University Medical Center","ror":"https://ror.org/036c27j91","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210135078"]},{"id":"https://openalex.org/I193531525","display_name":"George Washington University","ror":"https://ror.org/00y4zzh67","country_code":"US","type":"education","lineage":["https://openalex.org/I193531525"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jan Orenstein","raw_affiliation_strings":["Department of Pathology, George Washington University Medical Center, Washington, D.C., USA","Department of Pathology, George Washington University Medical Center, Washington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, George Washington University Medical Center, Washington, D.C., USA","institution_ids":["https://openalex.org/I4210135078","https://openalex.org/I193531525"]},{"raw_affiliation_string":"Department of Pathology, George Washington University Medical Center, Washington, USA","institution_ids":["https://openalex.org/I4210135078","https://openalex.org/I193531525"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029468094","display_name":"Kevin K. Dobbin","orcid":"https://orcid.org/0000-0001-7264-7055"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kevin Dobbin","raw_affiliation_strings":["Cancer Diagnosis Program, National Cancer Institute, National Institutes of Health, Bethesda, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Diagnosis Program, National Cancer Institute, National Institutes of Health, Bethesda, USA","institution_ids":["https://openalex.org/I4210140884","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111876824","display_name":"Ashok A. Patel","orcid":null},"institutions":[{"id":"https://openalex.org/I4210134769","display_name":"University of Pittsburgh Medical Center","ror":"https://ror.org/04ehecz88","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210098814","https://openalex.org/I4210134769"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ashok Patel","raw_affiliation_strings":["Center for Pathology Informatics and Benedum Oncology Informatics Center, University of Pittsburgh Medical Center, Pittsburgh, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Pathology Informatics and Benedum Oncology Informatics Center, University of Pittsburgh Medical Center, Pittsburgh, USA","institution_ids":["https://openalex.org/I4210134769"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026903972","display_name":"Rajiv Dhir","orcid":"https://orcid.org/0000-0001-6424-6112"},"institutions":[{"id":"https://openalex.org/I4210134769","display_name":"University of Pittsburgh Medical Center","ror":"https://ror.org/04ehecz88","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210098814","https://openalex.org/I4210134769"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rajiv Dhir","raw_affiliation_strings":["Center for Pathology Informatics and Benedum Oncology Informatics Center, University of Pittsburgh Medical Center, Pittsburgh, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Pathology Informatics and Benedum Oncology Informatics Center, University of Pittsburgh Medical Center, Pittsburgh, USA","institution_ids":["https://openalex.org/I4210134769"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085379143","display_name":"Michael J. Becich","orcid":"https://orcid.org/0000-0001-5998-8074"},"institutions":[{"id":"https://openalex.org/I4210134769","display_name":"University of Pittsburgh Medical Center","ror":"https://ror.org/04ehecz88","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210098814","https://openalex.org/I4210134769"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael J Becich","raw_affiliation_strings":["Center for Pathology Informatics and Benedum Oncology Informatics Center, University of Pittsburgh Medical Center, Pittsburgh, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Pathology Informatics and Benedum Oncology Informatics Center, University of Pittsburgh Medical Center, Pittsburgh, USA","institution_ids":["https://openalex.org/I4210134769"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5064983883"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210140884"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.134,"has_fulltext":true,"cited_by_count":46,"citation_normalized_percentile":{"value":0.92021089,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"5","issue":"1","first_page":"19","last_page":"19"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.7218000292778015,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.7218000292778015,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12867","display_name":"Advanced Biosensing Techniques and Applications","score":0.11550000309944153,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10755","display_name":"HER2/EGFR in Cancer Research","score":0.09600000083446503,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.8104337453842163},{"id":"https://openalex.org/keywords/tissue-microarray","display_name":"Tissue microarray","score":0.7330225706100464},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.679516077041626},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5386426448822021},{"id":"https://openalex.org/keywords/prostate-cancer","display_name":"Prostate cancer","score":0.4995894432067871},{"id":"https://openalex.org/keywords/data-exchange","display_name":"Data exchange","score":0.4544064402580261},{"id":"https://openalex.org/keywords/relational-database","display_name":"Relational database","score":0.42482790350914},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33757835626602173},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.31852078437805176},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1486382782459259},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12903645634651184}],"concepts":[{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.8104337453842163},{"id":"https://openalex.org/C193270364","wikidata":"https://www.wikidata.org/wiki/Q17141925","display_name":"Tissue microarray","level":3,"score":0.7330225706100464},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.679516077041626},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5386426448822021},{"id":"https://openalex.org/C2780192828","wikidata":"https://www.wikidata.org/wiki/Q181257","display_name":"Prostate cancer","level":3,"score":0.4995894432067871},{"id":"https://openalex.org/C15845906","wikidata":"https://www.wikidata.org/wiki/Q1172338","display_name":"Data exchange","level":2,"score":0.4544064402580261},{"id":"https://openalex.org/C5655090","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database","level":2,"score":0.42482790350914},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33757835626602173},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.31852078437805176},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1486382782459259},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12903645634651184},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003219","descriptor_name":"Confidentiality","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D003219","descriptor_name":"Confidentiality","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D003219","descriptor_name":"Confidentiality","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D003219","descriptor_name":"Confidentiality","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D003219","descriptor_name":"Confidentiality","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D003219","descriptor_name":"Confidentiality","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D019451","descriptor_name":"Information Management","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019451","descriptor_name":"Information Management","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019451","descriptor_name":"Information Management","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019451","descriptor_name":"Information Management","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019451","descriptor_name":"Information Management","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019451","descriptor_name":"Information Management","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019451","descriptor_name":"Information Management","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019451","descriptor_name":"Information Management","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019451","descriptor_name":"Information Management","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000331","qualifier_name":"legislation & jurisprudence","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000331","qualifier_name":"legislation & jurisprudence","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000331","qualifier_name":"legislation & jurisprudence","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000331","qualifier_name":"legislation & jurisprudence","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000331","qualifier_name":"legislation & jurisprudence","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000331","qualifier_name":"legislation & jurisprudence","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-5-19","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-19","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-19","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15040818","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15040818","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:f1adf39d26564b6a9a92d34089505760","is_oa":true,"landing_page_url":"https://doaj.org/article/f1adf39d26564b6a9a92d34089505760","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 5, Iss 1, p 19 (2004)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:1314671","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/373442","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-5-19","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-19","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-19","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5799999833106995,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2123493534.pdf","grobid_xml":"https://content.openalex.org/works/W2123493534.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1786726265","https://openalex.org/W1988336550","https://openalex.org/W2060992995","https://openalex.org/W2069726734","https://openalex.org/W2087810003","https://openalex.org/W2125577269","https://openalex.org/W2139211733","https://openalex.org/W2167846026","https://openalex.org/W2168032309","https://openalex.org/W2471089546"],"related_works":["https://openalex.org/W2480056510","https://openalex.org/W2412623563","https://openalex.org/W190299232","https://openalex.org/W1521481095","https://openalex.org/W594361471","https://openalex.org/W2604964690","https://openalex.org/W2417897055","https://openalex.org/W2613359208","https://openalex.org/W2291334382","https://openalex.org/W1484205720"],"abstract_inverted_index":{"BACKGROUND:":[0],"Tissue":[1,62,149,192,249],"Microarrays":[2],"(TMAs)":[3],"have":[4,28,120],"emerged":[5],"as":[6],"a":[7,24,78,140,183,224],"powerful":[8],"tool":[9],"for":[10,94,210],"examining":[11],"the":[12,95,98,132,155,188,200,232,248,263,285,300],"distribution":[13],"of":[14,19,97,113,125,164,199,204,265,284],"marker":[15],"molecules":[16,35],"in":[17,37,77,139,273],"hundreds":[18],"different":[20],"tissues":[21],"displayed":[22],"on":[23],"single":[25],"slide.":[26],"TMAs":[27,179],"been":[29,68,121],"used":[30],"successfully":[31],"to":[32,53,74,129,159,187,247,270,294,298],"validate":[33],"candidate":[34],"discovered":[36],"gene":[38,42],"array":[39],"experiments.":[40],"Like":[41],"expression":[43],"studies,":[44],"TMA":[45,72,133,184,201,233,244,259,286],"experiments":[46],"are":[47,235],"data":[48,73,86,208,215,266,271],"intensive,":[49],"requiring":[50],"substantial":[51],"information":[52,93],"interpret,":[54],"replicate":[55],"or":[56,111,268],"validate.":[57],"Recently,":[58],"an":[59,220,280],"open":[60,190,236,281],"access":[61,191,237,282],"Microarray":[63,193,250],"Data":[64,134,194,251,287],"Exchange":[65,135,195,252,288],"Specification":[66,136,253,289],"has":[67,181],"released":[69],"that":[70],"allows":[71],"be":[75,255],"organized":[76],"self-describing":[79],"XML":[80],"document":[81],"annotated":[82,167],"with":[83,162,168,240,257],"well-defined":[84],"common":[85],"elements.":[87],"While":[88],"this":[89,126,241],"specification":[90],"provides":[91,291],"sufficient":[92],"reproduction":[96],"experiment":[99],"by":[100,154],"outside":[101],"research":[102],"groups,":[103],"its":[104],"initial":[105],"description":[106],"did":[107],"not":[108],"contain":[109],"instructions":[110],"examples":[112],"actual":[114],"implementations,":[115],"and":[116,170,180,206,231,290],"no":[117],"implementation":[118,283],"studies":[119],"published.":[122],"The":[123,145,173,197,228],"purpose":[124],"paper":[127],"is":[128,137,152],"demonstrate":[130],"how":[131],"implemented":[138,182],"prostate":[141,165,177],"cancer":[142,166,178],"TMA.":[143],"RESULTS:":[144],"Cooperative":[146],"Prostate":[147],"Cancer":[148,157],"Resource":[150],"(CPCTR)":[151],"funded":[153],"National":[156],"Institute":[158],"provide":[160],"researchers":[161,295],"samples":[163],"demographic":[169,207],"clinical":[171,205],"data.":[172],"CPCTR":[174],"now":[175],"offers":[176],"database":[185,202,222,234],"conforming":[186,246],"new":[189],"Specification.":[196,301],"bulk":[198],"consists":[203],"elements":[209,216],"299":[211],"patient":[212],"samples.":[213],"These":[214],"were":[217],"extracted":[218],"from":[219],"Excel":[221],"using":[223],"transformative":[225],"Perl":[226,229],"script.":[227],"script":[230],"documents":[238],"distributed":[239],"manuscript.":[242],"CONCLUSIONS:":[243],"databases":[245],"can":[254],"merged":[256],"other":[258],"files,":[260],"expanded":[261],"through":[262],"addition":[264],"elements,":[267],"linked":[269],"contained":[272],"external":[274],"biological":[275],"databases.":[276],"This":[277],"article":[278],"describes":[279],"detailed":[292],"guidance":[293],"who":[296],"wish":[297],"use":[299]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
