{"id":"https://openalex.org/W1591139320","doi":"https://doi.org/10.1186/1471-2105-5-181","title":"Discriminative topological features reveal biological network mechanisms","display_name":"Discriminative topological features reveal biological network mechanisms","publication_year":2004,"publication_date":"2004-11-22","ids":{"openalex":"https://openalex.org/W1591139320","doi":"https://doi.org/10.1186/1471-2105-5-181","mag":"1591139320","pmid":"https://pubmed.ncbi.nlm.nih.gov/15555081"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-5-181","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-181","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-181","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-181","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060328938","display_name":"Manuel Middendorf","orcid":null},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Manuel Middendorf","raw_affiliation_strings":["Department of Physics, Columbia University, New York, USA. mjm2007@columbia.edu","Department of Physics, Columbia University, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics, Columbia University, New York, USA. mjm2007@columbia.edu","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Department of Physics, Columbia University, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038023778","display_name":"Etay Ziv","orcid":"https://orcid.org/0000-0002-3188-0085"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Etay Ziv","raw_affiliation_strings":["College of Physicians and Surgeons, Columbia University, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Physicians and Surgeons, Columbia University, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021383025","display_name":"Carter Adams","orcid":null},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carter Adams","raw_affiliation_strings":["Columbia College, Columbia University, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Columbia College, Columbia University, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078965783","display_name":"Jen Hom","orcid":null},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jen Hom","raw_affiliation_strings":["Fu Foundation School of Engineering and Applied Sciences, Columbia University, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fu Foundation School of Engineering and Applied Sciences, Columbia University, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033591000","display_name":"Robin Koytcheff","orcid":"https://orcid.org/0000-0002-1056-5318"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robin Koytcheff","raw_affiliation_strings":["Fu Foundation School of Engineering and Applied Sciences, Columbia University, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fu Foundation School of Engineering and Applied Sciences, Columbia University, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059223297","display_name":"Chaya Levovitz","orcid":"https://orcid.org/0000-0002-9251-2294"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]},{"id":"https://openalex.org/I98540497","display_name":"Barnard College","ror":"https://ror.org/04rt94r53","country_code":"US","type":"education","lineage":["https://openalex.org/I98540497"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chaya Levovitz","raw_affiliation_strings":["Barnard College, Columbia University, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Barnard College, Columbia University, New York, USA","institution_ids":["https://openalex.org/I78577930","https://openalex.org/I98540497"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047661187","display_name":"Gregory Woods","orcid":null},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gregory Woods","raw_affiliation_strings":["Columbia College, Columbia University, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Columbia College, Columbia University, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105412622","display_name":"Linda Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Linda Chen","raw_affiliation_strings":["Department of Mathematics, Columbia University, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Columbia University, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085649470","display_name":"Chris H. Wiggins","orcid":null},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris Wiggins","raw_affiliation_strings":["Center for Computational Biology and Bioinformatics, Columbia University, New York, USA","Department of Applied Physics and Applied Mathematics, Columbia University, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics, Columbia University, New York, USA","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Department of Applied Physics and Applied Mathematics, Columbia University, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5060328938"],"corresponding_institution_ids":["https://openalex.org/I78577930"],"apc_list":{"value":2990,"currency":"USD","value_usd":2990},"apc_paid":{"value":2990,"currency":"USD","value_usd":2990},"fwci":1.4838,"has_fulltext":true,"cited_by_count":30,"citation_normalized_percentile":{"value":0.795831,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"5","issue":"1","first_page":"181","last_page":"181"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.4618000090122223,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.4618000090122223,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12417","display_name":"Morphological variations and asymmetry","score":0.08640000224113464,"subfield":{"id":"https://openalex.org/subfields/2608","display_name":"Geometry and Topology"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10676","display_name":"Genetics, Aging, and Longevity in Model Organisms","score":0.05169999971985817,"subfield":{"id":"https://openalex.org/subfields/1302","display_name":"Aging"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/discriminative-model","display_name":"Discriminative model","score":0.709141731262207},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6779305934906006},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.6377127766609192},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5363724231719971},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.49810075759887695},{"id":"https://openalex.org/keywords/network-model","display_name":"Network model","score":0.4464534819126129},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.42679935693740845},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.42611029744148254},{"id":"https://openalex.org/keywords/network-analysis","display_name":"Network analysis","score":0.4192487597465515},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.372302383184433},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3663274049758911},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.13237515091896057},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10026538372039795}],"concepts":[{"id":"https://openalex.org/C97931131","wikidata":"https://www.wikidata.org/wiki/Q5282087","display_name":"Discriminative model","level":2,"score":0.709141731262207},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6779305934906006},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.6377127766609192},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5363724231719971},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.49810075759887695},{"id":"https://openalex.org/C104122410","wikidata":"https://www.wikidata.org/wiki/Q1416406","display_name":"Network model","level":2,"score":0.4464534819126129},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.42679935693740845},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.42611029744148254},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.4192487597465515},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.372302383184433},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3663274049758911},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.13237515091896057},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10026538372039795},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009415","descriptor_name":"Nerve Net","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009415","descriptor_name":"Nerve Net","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009415","descriptor_name":"Nerve Net","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009415","descriptor_name":"Nerve Net","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D048168","descriptor_name":"Escherichia coli K12","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048168","descriptor_name":"Escherichia coli K12","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048168","descriptor_name":"Escherichia coli K12","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048168","descriptor_name":"Escherichia coli K12","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/1471-2105-5-181","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-181","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-181","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15555081","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15555081","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:103407","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC535926","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:535926","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/535926","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.86.426","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.86.426","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.columbia.edu/itc/applied/wiggins/netclass/netclass.pdf","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:1adbb850412d4820b318a472a81e0971","is_oa":false,"landing_page_url":"https://doaj.org/article/1adbb850412d4820b318a472a81e0971","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 5, Iss 1, p 181 (2004)","raw_type":"article"},{"id":"doi:10.7916/d8vd6wkk","is_oa":true,"landing_page_url":"https://doi.org/10.7916/d8vd6wkk","pdf_url":null,"source":{"id":"https://openalex.org/S4306402601","display_name":"Columbia Academic Commons (Columbia University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I78577930","host_organization_name":"Columbia University","host_organization_lineage":["https://openalex.org/I78577930"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-5-181","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-181","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-181","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7599999904632568,"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320338304","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1591139320.pdf","grobid_xml":"https://content.openalex.org/works/W1591139320.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1576520375","https://openalex.org/W1604938182","https://openalex.org/W1647964278","https://openalex.org/W1699386116","https://openalex.org/W1809086278","https://openalex.org/W1974672547","https://openalex.org/W1976969221","https://openalex.org/W1994491374","https://openalex.org/W1995907191","https://openalex.org/W2006038621","https://openalex.org/W2008620264","https://openalex.org/W2011986160","https://openalex.org/W2033488646","https://openalex.org/W2042693705","https://openalex.org/W2048451896","https://openalex.org/W2051578424","https://openalex.org/W2052468365","https://openalex.org/W2053248591","https://openalex.org/W2059480311","https://openalex.org/W2062215476","https://openalex.org/W2066235893","https://openalex.org/W2080450835","https://openalex.org/W2084668512","https://openalex.org/W2088209891","https://openalex.org/W2104977387","https://openalex.org/W2110699703","https://openalex.org/W2112090702","https://openalex.org/W2115579680","https://openalex.org/W2130790725","https://openalex.org/W2136495744","https://openalex.org/W2148606196","https://openalex.org/W2153624566","https://openalex.org/W2156909104","https://openalex.org/W2160938187","https://openalex.org/W2769133055","https://openalex.org/W2997134027","https://openalex.org/W3015571647","https://openalex.org/W3124111263","https://openalex.org/W4312512934"],"related_works":["https://openalex.org/W2901655697","https://openalex.org/W2727283706","https://openalex.org/W1525985997","https://openalex.org/W108107911","https://openalex.org/W118100147","https://openalex.org/W2952963846","https://openalex.org/W2161626927","https://openalex.org/W2135602072","https://openalex.org/W2013286793","https://openalex.org/W2023465156"],"abstract_inverted_index":{"BACKGROUND:":[0],"Recent":[1],"genomic":[2],"and":[3,21,55,237,256,271,275],"bioinformatic":[4],"advances":[5],"have":[6],"motivated":[7],"the":[8,27,45,89,109,120,142,160,211,226,231,238],"development":[9],"of":[10,18,29,44,60,88,97,108,119,133,136,146,162,193,197,244,247,283],"numerous":[11],"network":[12,113,138,196,248,269],"models":[13,61,91,189,207,249,270],"intending":[14],"to":[15,85,129,165,185],"describe":[16,225],"graphs":[17,164],"biological,":[19],"technological,":[20],"sociological":[22],"origin.":[23],"In":[24,76],"most":[25,143,191],"cases":[26],"success":[28],"a":[30,40,104,116,127,134,147,157,166,194,245,251,257,264,281],"model":[31,255],"has":[32],"been":[33],"evaluated":[34],"by":[35,72],"how":[36],"well":[37],"it":[38,100],"reproduces":[39],"few":[41,80],"key":[42],"features":[43,65,82],"real-world":[46],"data,":[47],"such":[48,77],"as":[49],"degree":[50],"distributions,":[51],"mean":[52],"geodesic":[53],"lengths,":[54],"clustering":[56],"coefficients.":[57],"Often":[58],"pairs":[59],"can":[62],"reproduce":[63],"these":[64,79],"with":[66],"indistinguishable":[67],"fidelity":[68],"despite":[69],"being":[70],"generated":[71,204],"vastly":[73],"different":[74,90,221],"mechanisms.":[75],"cases,":[78],"target":[81],"are":[83,190],"insufficient":[84],"distinguish":[86],"which":[87,132,182,188],"best":[92,224],"describes":[93],"real":[94],"world":[95],"networks":[96,121,203],"interest;":[98],"moreover,":[99],"is":[101,263],"not":[102],"clear":[103],"priori":[105],"that":[106,220],"any":[107],"presently-existing":[110],"algorithms":[111,140],"for":[112,179,280],"generation":[114,139],"offers":[115],"predictive":[117],"description":[118,145],"inspiring":[122],"them.":[123],"RESULTS:":[124],"We":[125,218],"present":[126],"method":[128,262],"assess":[130],"systematically":[131],"set":[135,161,246],"proposed":[137],"gives":[141],"accurate":[144],"given":[148,195],"biological":[149],"network.":[150],"To":[151],"derive":[152],"discriminative":[153],"classifiers,":[154],"we":[155,276],"construct":[156],"mapping":[158],"from":[159,205,210],"all":[163],"high-dimensional":[167],"(in":[168],"principle":[169],"infinite-dimensional)":[170],"\"word":[171],"space\".":[172],"This":[173],"map":[174],"defines":[175],"an":[176],"input":[177],"space":[178],"classification":[180],"schemes":[181,223],"allow":[183],"us":[184],"state":[186],"unambiguously":[187],"descriptive":[192],"interest.":[198],"Our":[199,261],"training":[200],"sets":[201],"include":[202],"17":[206],"either":[208],"drawn":[209],"literature":[212],"or":[213],"introduced":[214],"in":[215],"this":[216],"work.":[217],"show":[219],"duplication-mutation":[222],"E.":[227],"coli":[228],"genetic":[229],"network,":[230,236,242],"S.":[232],"cerevisiae":[233],"protein":[234],"interaction":[235],"C.":[239],"elegans":[240],"neuronal":[241],"out":[243],"including":[250],"linear":[252],"preferential":[253],"attachment":[254],"small-world":[258],"model.":[259],"CONCLUSIONS:":[260],"first":[265],"step":[266],"towards":[267],"systematizing":[268],"assessing":[272],"their":[273],"predictability,":[274],"anticipate":[277],"its":[278],"usefulness":[279],"number":[282],"communities.":[284]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-08-27T14:10:00.468798","created_date":"2025-10-10T00:00:00"}
