{"id":"https://openalex.org/W1562379206","doi":"https://doi.org/10.1186/1471-2105-5-163","title":"TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences","display_name":"TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences","publication_year":2004,"publication_date":"2004-10-26","ids":{"openalex":"https://openalex.org/W1562379206","doi":"https://doi.org/10.1186/1471-2105-5-163","mag":"1562379206","pmid":"https://pubmed.ncbi.nlm.nih.gov/15507136"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-5-163","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-163","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-163","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-163","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108074049","display_name":"Hanno Teeling","orcid":null},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210103014","display_name":"Max Planck Institute for Marine Microbiology","ror":"https://ror.org/02385fa51","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210103014"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hanno Teeling","raw_affiliation_strings":["Microbial Genomics Group, Max Planck Institute for Marine Microbiology, D-28359 Bremen, Germany. hteeling@mpi-bremen.de <hteeling@mpi-bremen.de>","Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Bremen,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microbial Genomics Group, Max Planck Institute for Marine Microbiology, D-28359 Bremen, Germany. hteeling@mpi-bremen.de <hteeling@mpi-bremen.de>","institution_ids":["https://openalex.org/I4210103014"]},{"raw_affiliation_string":"Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Bremen,","institution_ids":["https://openalex.org/I149899117"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026966414","display_name":"Jost Waldmann","orcid":null},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210103014","display_name":"Max Planck Institute for Marine Microbiology","ror":"https://ror.org/02385fa51","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210103014"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jost Waldmann","raw_affiliation_strings":["Microbial Genomics Group, Max Planck Institute for Marine Microbiology, D-28359, Bremen, Germany","Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Bremen,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microbial Genomics Group, Max Planck Institute for Marine Microbiology, D-28359, Bremen, Germany","institution_ids":["https://openalex.org/I4210103014"]},{"raw_affiliation_string":"Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Bremen,","institution_ids":["https://openalex.org/I149899117"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086334945","display_name":"Thierry Lombardot","orcid":"https://orcid.org/0000-0003-4157-0029"},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210103014","display_name":"Max Planck Institute for Marine Microbiology","ror":"https://ror.org/02385fa51","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210103014"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thierry Lombardot","raw_affiliation_strings":["Microbial Genomics Group, Max Planck Institute for Marine Microbiology, D-28359, Bremen, Germany","Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Bremen,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microbial Genomics Group, Max Planck Institute for Marine Microbiology, D-28359, Bremen, Germany","institution_ids":["https://openalex.org/I4210103014"]},{"raw_affiliation_string":"Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Bremen,","institution_ids":["https://openalex.org/I149899117"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006875421","display_name":"Margarete Bauer","orcid":null},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210103014","display_name":"Max Planck Institute for Marine Microbiology","ror":"https://ror.org/02385fa51","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210103014"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Margarete Bauer","raw_affiliation_strings":["Microbial Genomics Group, Max Planck Institute for Marine Microbiology, D-28359, Bremen, Germany","Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Bremen,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microbial Genomics Group, Max Planck Institute for Marine Microbiology, D-28359, Bremen, Germany","institution_ids":["https://openalex.org/I4210103014"]},{"raw_affiliation_string":"Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Bremen,","institution_ids":["https://openalex.org/I149899117"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091470163","display_name":"Frank Oliver Gl\u00f6ckner","orcid":"https://orcid.org/0000-0001-8528-9023"},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I166433441","display_name":"Hochschule Bremen","ror":"https://ror.org/04f7jc139","country_code":"DE","type":"education","lineage":["https://openalex.org/I166433441"]},{"id":"https://openalex.org/I180437899","display_name":"University of Bremen","ror":"https://ror.org/04ers2y35","country_code":"DE","type":"education","lineage":["https://openalex.org/I180437899"]},{"id":"https://openalex.org/I193619901","display_name":"Constructor University","ror":"https://ror.org/02yrs2n53","country_code":"DE","type":"education","lineage":["https://openalex.org/I193619901"]},{"id":"https://openalex.org/I4210103014","display_name":"Max Planck Institute for Marine Microbiology","ror":"https://ror.org/02385fa51","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210103014"]},{"id":"https://openalex.org/I883909435","display_name":"International University","ror":"https://ror.org/02knr1992","country_code":"KH","type":"education","lineage":["https://openalex.org/I883909435"]}],"countries":["DE","KH"],"is_corresponding":true,"raw_author_name":"Frank Oliver Gl\u00f6ckner","raw_affiliation_strings":["International University Bremen, D-28759, Bremen, Germany","Microbial Genomics Group, Max Planck Institute for Marine Microbiology, D-28359, Bremen, Germany","International University Bremen, Bremen, Germany","Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Bremen"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International University Bremen, D-28759, Bremen, Germany","institution_ids":["https://openalex.org/I166433441","https://openalex.org/I180437899","https://openalex.org/I883909435"]},{"raw_affiliation_string":"Microbial Genomics Group, Max Planck Institute for Marine Microbiology, D-28359, Bremen, Germany","institution_ids":["https://openalex.org/I4210103014"]},{"raw_affiliation_string":"International University Bremen, Bremen, Germany","institution_ids":["https://openalex.org/I193619901"]},{"raw_affiliation_string":"Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Bremen","institution_ids":["https://openalex.org/I149899117"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5091470163"],"corresponding_institution_ids":["https://openalex.org/I149899117","https://openalex.org/I166433441","https://openalex.org/I180437899","https://openalex.org/I193619901","https://openalex.org/I4210103014","https://openalex.org/I883909435"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":3.4012,"has_fulltext":true,"cited_by_count":398,"citation_normalized_percentile":{"value":0.92872634,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":"5","issue":"1","first_page":"163","last_page":"163"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.6283000111579895,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.6283000111579895,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.06639999896287918,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11879","display_name":"Protist diversity and phylogeny","score":0.04320000112056732,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5924856066703796},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.4859987199306488},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.46306413412094116},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.45895108580589294},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44868433475494385},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.4400685727596283},{"id":"https://openalex.org/keywords/dna-profiling","display_name":"DNA profiling","score":0.4349818229675293},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4301602244377136},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4059925675392151},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3723973333835602},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.334297776222229},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14186087250709534},{"id":"https://openalex.org/keywords/business","display_name":"Business","score":0.13545405864715576},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.08880993723869324}],"concepts":[{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5924856066703796},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.4859987199306488},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.46306413412094116},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.45895108580589294},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44868433475494385},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.4400685727596283},{"id":"https://openalex.org/C79386861","wikidata":"https://www.wikidata.org/wiki/Q476697","display_name":"DNA profiling","level":3,"score":0.4349818229675293},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4301602244377136},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4059925675392151},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3723973333835602},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.334297776222229},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14186087250709534},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.13545405864715576},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.08880993723869324},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001482","descriptor_name":"Base Composition","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001482","descriptor_name":"Base Composition","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001482","descriptor_name":"Base Composition","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002876","descriptor_name":"Chromosomes, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002876","descriptor_name":"Chromosomes, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002876","descriptor_name":"Chromosomes, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004925","descriptor_name":"Escherichia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004925","descriptor_name":"Escherichia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004925","descriptor_name":"Escherichia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012760","descriptor_name":"Shigella","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012760","descriptor_name":"Shigella","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012760","descriptor_name":"Shigella","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015007","descriptor_name":"Yersinia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015007","descriptor_name":"Yersinia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015007","descriptor_name":"Yersinia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020369","descriptor_name":"Bradyrhizobium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020369","descriptor_name":"Bradyrhizobium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020369","descriptor_name":"Bradyrhizobium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020579","descriptor_name":"Sinorhizobium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020579","descriptor_name":"Sinorhizobium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020579","descriptor_name":"Sinorhizobium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048929","descriptor_name":"Prochlorococcus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048929","descriptor_name":"Prochlorococcus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048929","descriptor_name":"Prochlorococcus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1186/1471-2105-5-163","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-163","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-163","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15507136","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15507136","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:escidoc.org:escidoc:2485832","is_oa":true,"landing_page_url":"http://hdl.handle.net/21.11116/0000-0001-D0F4-0","pdf_url":"http://hdl.handle.net/21.11116/0000-0001-D0F4-0","source":{"id":"https://openalex.org/S7407052962","display_name":"Max Planck Digital Library","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:6c20dbe45cf341199a12a46d62041c0d","is_oa":false,"landing_page_url":"https://doaj.org/article/6c20dbe45cf341199a12a46d62041c0d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 5, Iss 1, p 163 (2004)","raw_type":"article"},{"id":"pmh:oai:edoc.mpg.de:222370","is_oa":false,"landing_page_url":"http://edoc.mpg.de/222370","pdf_url":null,"source":{"id":"https://openalex.org/S4406922265","display_name":"Max Planck Institute for Plasma Physics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, v.5, 1-7 (2004)","raw_type":"Article"},{"id":"pmh:oai:europepmc.org:103312","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC529438","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:529438","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/529438","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.mpg.de:item_2485832","is_oa":true,"landing_page_url":"https://hdl.handle.net/21.11116/0000-0001-D0F4-0","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-5-163","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-163","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-163","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities","score":0.6100000143051147}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322434","display_name":"Max-Planck-Gesellschaft","ror":"https://ror.org/01hhn8329"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1562379206.pdf","grobid_xml":"https://content.openalex.org/works/W1562379206.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1993293753","https://openalex.org/W2031782198","https://openalex.org/W2038399775","https://openalex.org/W2044719651","https://openalex.org/W2058271398","https://openalex.org/W2068308871","https://openalex.org/W2072590703","https://openalex.org/W2081676964","https://openalex.org/W2082521980","https://openalex.org/W2093886776","https://openalex.org/W2099834878","https://openalex.org/W2106104287","https://openalex.org/W2124637227","https://openalex.org/W2129075788","https://openalex.org/W2131988453","https://openalex.org/W2140211206","https://openalex.org/W2140320695","https://openalex.org/W2141524685","https://openalex.org/W2141929300","https://openalex.org/W2165865222","https://openalex.org/W2171777099","https://openalex.org/W4298343290"],"related_works":["https://openalex.org/W2155729138","https://openalex.org/W2415545834","https://openalex.org/W2069695727","https://openalex.org/W2150084125","https://openalex.org/W2118505788","https://openalex.org/W1802639773","https://openalex.org/W2976029994","https://openalex.org/W1972196578","https://openalex.org/W1490878237","https://openalex.org/W1542823905"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1,72],"the":[2,30,46,56,66,75,95,99,110,149,156,169,174,187,245,263,269,288,302],"emerging":[3],"field":[4],"of":[5,12,26,32,39,58,77,107,112,125,151,176,183,218,247,290,305],"environmental":[6],"genomics,":[7],"direct":[8],"cloning":[9],"and":[10,98,200,213,237,266],"sequencing":[11],"genomic":[13,130,152,291],"fragments":[14,48,153,292],"from":[15,65,293],"complex":[16],"microbial":[17],"communities":[18],"has":[19],"proven":[20],"to":[21,63,142,173,243,277,298],"be":[22],"a":[23,122,134,137,160,191,209,216,233,256,281],"valuable":[24,85],"source":[25,238],"new":[27,299],"enzymes,":[28],"expanding":[29],"knowledge":[31],"basic":[33],"biological":[34],"processes.":[35],"The":[36,203],"central":[37],"problem":[38],"this":[40,91],"so":[41],"called":[42],"metagenome-approach":[43],"is":[44,159,171,206,254,271],"that":[45,60],"cloned":[47],"often":[49],"lack":[50],"suitable":[51],"phylogenetic":[52],"marker":[53],"genes,":[54],"rendering":[55],"identification":[57],"clones":[59],"are":[61],"likely":[62],"originate":[64],"same":[67],"genome":[68],"difficult":[69],"or":[70,136],"impossible.":[71],"such":[73,145],"cases,":[74],"analysis":[76,124,147,246],"intrinsic":[78],"DNA-signatures":[79],"like":[80],"tetranucleotide":[81,114,126,180,225],"frequencies":[82],"can":[83,214],"provide":[84],"hints":[86],"on":[87,155],"fragment":[88,166],"affiliation.":[89],"With":[90,140,262],"application":[92],"in":[93,129,274],"mind,":[94],"TETRA":[96,100,120,264],"web-service":[97,135,170,265],"stand-alone":[101,138,188,204,267],"program":[102,189,205],"have":[103],"been":[104],"developed,":[105],"both":[106],"which":[108,158],"automate":[109],"task":[111],"comparative":[113],"frequency":[115],"analysis.":[116],"AVAILABILITY:":[117],"http://www.megx.net/tetra.":[118],"RESULTS:":[119],"provides":[121],"statistical":[123],"usage":[127,181,226],"patterns":[128,182,227],"fragments,":[131],"either":[132],"via":[133,208],"program.":[139],"respect":[141],"discriminatory":[143],"power,":[144],"an":[146,275],"outperforms":[148],"assignment":[150],"based":[154],"(G+C)-content,":[157],"widely-used":[161],"sequence-based":[162],"measure":[163],"for":[164,228,239,280],"assessing":[165],"relatedness.":[167],"While":[168],"restricted":[172],"calculation":[175],"correlation":[177],"coefficients":[178],"between":[179],"submitted":[184],"DNA":[185,252],"sequences,":[186],"generates":[190],"much":[192],"more":[193],"detailed":[194],"output,":[195],"comprising":[196],"all":[197],"raw":[198],"data":[199],"graphical":[201,210],"plots.":[202],"controlled":[207],"user":[211],"interface":[212],"batch-process":[215],"multitude":[217],"sequences.":[219],"Furthermore,":[220],"it":[221],"comes":[222],"with":[223],"pre-computed":[224],"166":[229],"prokaryote":[230],"chromosomes,":[231],"providing":[232],"useful":[234],"reference":[235],"dataset":[236],"data-mining.":[240],"CONCLUSIONS:":[241],"Up":[242],"now,":[244],"skewed":[248],"oligonucleotide":[249],"distributions":[250],"within":[251,260],"sequences":[253],"not":[255],"commonly":[257],"used":[258],"tool":[259],"metagenomics.":[261],"program,":[268],"method":[270],"now":[272],"accessible":[273],"easy":[276],"use":[278],"manner":[279],"broad":[282],"audience.":[283],"This":[284],"will":[285],"hopefully":[286],"facilitate":[287],"interrelation":[289],"metagenome":[294],"libraries,":[295],"ultimately":[296],"leading":[297],"insights":[300],"into":[301],"genetic":[303],"potentials":[304],"yet":[306],"uncultured":[307],"microorganisms.":[308]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":18},{"year":2019,"cited_by_count":21},{"year":2018,"cited_by_count":18},{"year":2017,"cited_by_count":26},{"year":2016,"cited_by_count":24},{"year":2015,"cited_by_count":40},{"year":2014,"cited_by_count":33},{"year":2013,"cited_by_count":29},{"year":2012,"cited_by_count":28}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
