{"id":"https://openalex.org/W2139079647","doi":"https://doi.org/10.1186/1471-2105-5-107","title":"STING Millennium Suite: integrated software for extensive analyses of 3d structures of proteins and their complexes","display_name":"STING Millennium Suite: integrated software for extensive analyses of 3d structures of proteins and their complexes","publication_year":2004,"publication_date":"2004-08-09","ids":{"openalex":"https://openalex.org/W2139079647","doi":"https://doi.org/10.1186/1471-2105-5-107","mag":"2139079647","pmid":"https://pubmed.ncbi.nlm.nih.gov/15301693"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-5-107","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-107","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-107","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-107","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113923068","display_name":"R. H. Higa","orcid":null},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Roberto H Higa","raw_affiliation_strings":["N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil. roberto@cnptia.embrapa.br","N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil. roberto@cnptia.embrapa.br","institution_ids":["https://openalex.org/I199691007"]},{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, Brazil","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087789032","display_name":"Roberto Coiti Togawa","orcid":"https://orcid.org/0000-0001-7179-3210"},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Roberto C Togawa","raw_affiliation_strings":["Laborat\u00f3rio de Bioinform\u00e1tica, Embrapa/Recursos Gen\u00e9ticos e Biotecnologia, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Bras\u00edlia, DF, Brazil","Laborat\u00f3rio de Bioinform\u00e1tica, Embrapa/Recursos Gen\u00e9ticos e Biotecnologia, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Bras\u00edlia, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio de Bioinform\u00e1tica, Embrapa/Recursos Gen\u00e9ticos e Biotecnologia, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Bras\u00edlia, DF, Brazil","institution_ids":["https://openalex.org/I199691007"]},{"raw_affiliation_string":"Laborat\u00f3rio de Bioinform\u00e1tica, Embrapa/Recursos Gen\u00e9ticos e Biotecnologia, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Bras\u00edlia, Brazil","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063478567","display_name":"A. J. Montagner","orcid":null},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Arnaldo J Montagner","raw_affiliation_strings":["N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil","N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil","institution_ids":["https://openalex.org/I199691007"]},{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, Brazil","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000638074","display_name":"Juliana CF Palandrani","orcid":null},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Juliana CF Palandrani","raw_affiliation_strings":["N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil","N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil","institution_ids":["https://openalex.org/I199691007"]},{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, Brazil","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086820812","display_name":"Igor KS Okimoto","orcid":null},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Igor KS Okimoto","raw_affiliation_strings":["N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil","N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil","institution_ids":["https://openalex.org/I199691007"]},{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, Brazil","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058040518","display_name":"Paula R. Kuser","orcid":"https://orcid.org/0000-0002-0034-0932"},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Paula R Kuser","raw_affiliation_strings":["N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil","N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil","institution_ids":["https://openalex.org/I199691007"]},{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, Brazil","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113682188","display_name":"Michel EB Yamagishi","orcid":null},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Michel EB Yamagishi","raw_affiliation_strings":["N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil","N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil","institution_ids":["https://openalex.org/I199691007"]},{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, Brazil","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038294401","display_name":"A. L. Mancini","orcid":null},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Adauto L Mancini","raw_affiliation_strings":["N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil","N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil","institution_ids":["https://openalex.org/I199691007"]},{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, Brazil","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076918011","display_name":"Goran Neshich","orcid":"https://orcid.org/0000-0003-4982-0416"},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Goran Neshich","raw_affiliation_strings":["N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil","N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil","institution_ids":["https://openalex.org/I199691007"]},{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, Brazil","institution_ids":["https://openalex.org/I199691007"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5076918011"],"corresponding_institution_ids":["https://openalex.org/I199691007"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.0852,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.75452628,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"5","issue":"1","first_page":"107","last_page":"107"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.3772999942302704,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.3772999942302704,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.08209999650716782,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.07259999960660934,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6819714903831482},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6736838817596436},{"id":"https://openalex.org/keywords/server","display_name":"Server","score":0.5481963753700256},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.529204249382019},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.5267804861068726},{"id":"https://openalex.org/keywords/software-suite","display_name":"Software suite","score":0.47690558433532715},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.47341591119766235},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.4345271587371826},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.4230389893054962},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.32799237966537476},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2368011772632599},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10390710830688477}],"concepts":[{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6819714903831482},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6736838817596436},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.5481963753700256},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.529204249382019},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.5267804861068726},{"id":"https://openalex.org/C2778736646","wikidata":"https://www.wikidata.org/wiki/Q1143070","display_name":"Software suite","level":3,"score":0.47690558433532715},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.47341591119766235},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.4345271587371826},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.4230389893054962},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.32799237966537476},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2368011772632599},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10390710830688477},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020836","descriptor_name":"Protein Structure, Quaternary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020836","descriptor_name":"Protein Structure, Quaternary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020836","descriptor_name":"Protein Structure, Quaternary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020836","descriptor_name":"Protein Structure, Quaternary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/1471-2105-5-107","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-107","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-107","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15301693","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15301693","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:americanae.aecid.es:2095335","is_oa":true,"landing_page_url":"http://www.alice.cnptia.embrapa.br/handle/doc/9093","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:Reposit\u00f3rio Institucional da EMBRAPA","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:41e5ae74f17b47c886060aae1ad702ce","is_oa":true,"landing_page_url":"https://doaj.org/article/41e5ae74f17b47c886060aae1ad702ce","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 5, Iss 1, p 107 (2004)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:103035","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC514601","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:514601","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/514601","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:www.alice.cnptia.embrapa.br:doc/9093","is_oa":true,"landing_page_url":"http://www.alice.cnptia.embrapa.br/alice/handle/doc/9093","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"instacron:EMBRAPA","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-5-107","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-5-107","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-5-107","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.44999998807907104,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"},{"score":0.4099999964237213,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G2531298479","display_name":"Criacao de um centro para a pesquisa e oferta de servicos em bioinformatica (cb).","funder_award_id":"01/08895-0","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"}],"funders":[{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320322904","display_name":"Financiadora de Estudos e Projetos","ror":"https://ror.org/030w99567"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2139079647.pdf","grobid_xml":"https://content.openalex.org/works/W2139079647.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1533208683","https://openalex.org/W1986191025","https://openalex.org/W1987688066","https://openalex.org/W2008708467","https://openalex.org/W2015642465","https://openalex.org/W2049902088","https://openalex.org/W2053961916","https://openalex.org/W2059284454","https://openalex.org/W2099254366","https://openalex.org/W2130479394","https://openalex.org/W2141920771","https://openalex.org/W2152705200","https://openalex.org/W2166233246","https://openalex.org/W2916078022","https://openalex.org/W4239198058"],"related_works":["https://openalex.org/W1516095885","https://openalex.org/W2158573927","https://openalex.org/W2626999804","https://openalex.org/W4231704780","https://openalex.org/W2108921801","https://openalex.org/W4250004941","https://openalex.org/W4206079007","https://openalex.org/W2736202444","https://openalex.org/W2398058485","https://openalex.org/W2049015391"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,134],"integration":[2,82],"of":[3,6,20,60,63,73,81,87,200,216,272],"many":[4,232],"aspects":[5],"protein/DNA":[7],"structure":[8,89,130],"analysis":[9,59,86,309],"is":[10,48,51,115,139,226,254,298,310],"an":[11],"important":[12,186],"requirement":[13,162,320],"for":[14,57,119,128,163,266,321],"software":[15,29,56,75,127,229,237,258],"products":[16],"in":[17,40,263],"general":[18],"area":[19],"structural":[21],"bioinformatics.":[22],"In":[23],"fact,":[24],"there":[25],"are":[26,104],"too":[27],"few":[28],"packages":[30,76],"on":[31,143,313],"the":[32,61,95,158,164,178,181,248,270,295],"internet":[33],"which":[34,114],"can":[35],"be":[36,171],"described":[37],"as":[38,191,195,197,301],"successful":[39],"this":[41],"respect.":[42],"We":[43,103],"might":[44],"say":[45],"that":[46],"what":[47],"still":[49],"missing":[50],"publicly":[52,256],"available,":[53],"web":[54,125],"based":[55,126],"interactive":[58],"sequence/structure/function":[62,132],"proteins":[64],"and":[65,70,83,131,146,188,222,231,236,317],"their":[66,264],"complexes":[67],"with":[68,149,173,289,318],"DNA":[69],"ligands.":[71],"Some":[72],"existing":[74,214],"do":[77,84,240],"have":[78,206],"certain":[79],"level":[80],"offer":[85,241],"several":[88],"related":[90],"parameters,":[91],"however":[92],"not":[93,155],"to":[94,170,193,213,260,278,281],"extent":[96],"generally":[97],"demanded":[98],"by":[99,305],"a":[100,243,279,290,302],"user.":[101],"RESULTS:":[102],"reporting":[105],"here":[106],"about":[107,269],"new":[108,135,182,209],"Sting":[109],"Millennium":[110,252],"Suite":[111],"(SMS)":[112],"version":[113,138],"fully":[116],"accessible":[117],"(including":[118],"local":[120,175,325],"files":[121,153],"at":[122,157],"client":[123,137],"end),":[124],"molecular":[129,284],"analysis.":[133],"SMS":[136,167,183,201,210,218,225,250,276,297,308],"now":[140,311],"operational":[141],"also":[142],"Linux":[144,314],"boxes":[145,316],"it":[147],"works":[148],"non-public":[150],"pdb":[151],"formatted":[152],"(structures":[154],"deposited":[156],"RCSB/PDB),":[159],"eliminating":[160],"earlier":[161],"registration":[165,322],"if":[166],"components":[168],"were":[169],"used":[172,300],"user's":[174],"files.":[176,326],"At":[177],"same":[179],"time":[180],"offers":[184],"some":[185,306],"additions":[187],"improvements":[189],"such":[190],"link":[192,244],"ProTherm":[194],"well":[196],"significant":[198],"re-engineering":[199],"component":[202],"ConSSeq.":[203],"Also,":[204],"we":[205],"added":[207],"3":[208],"mirror":[211],"sites":[212],"network":[215],"global":[217],"servers:":[219],"Argentina,":[220],"Japan":[221],"Spain.":[223],"CONCLUSION:":[224],"already":[227,299],"established":[228],"package":[230],"key":[233],"data":[234],"base":[235],"servers":[238],"worldwide,":[239],"either":[242],"to,":[245],"or":[246],"host":[247],"SMS.":[249],"(Sting":[251],"Suite)":[253],"web-based":[255],"available":[257,293],"developed":[259],"aid":[261],"researches":[262],"quest":[265],"translating":[267],"information":[268,288],"structures":[271],"macromolecules":[273],"into":[274],"knowledge.":[275],"allows":[277],"user":[280],"interactively":[282],"analyze":[283],"structures,":[285],"cross-referencing":[286],"visualized":[287],"correlated":[291],"one,":[292],"across":[294],"internet.":[296],"didactic":[303],"tool":[304],"universities.":[307],"possible":[312],"OS":[315],"no":[319],"when":[323],"using":[324]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":2}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
