{"id":"https://openalex.org/W2143836724","doi":"https://doi.org/10.1186/1471-2105-4-38","title":"Genome-wide prediction, display and refinement of binding sites with information theory-based models","display_name":"Genome-wide prediction, display and refinement of binding sites with information theory-based models","publication_year":2003,"publication_date":"2003-09-08","ids":{"openalex":"https://openalex.org/W2143836724","doi":"https://doi.org/10.1186/1471-2105-4-38","mag":"2143836724","pmid":"https://pubmed.ncbi.nlm.nih.gov/12962546"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-4-38","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-4-38","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-4-38","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-4-38","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021785128","display_name":"Sashidhar Gadiraju","orcid":null},"institutions":[{"id":"https://openalex.org/I1328594524","display_name":"Children's Mercy Hospital","ror":"https://ror.org/04zfmcq84","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1328594524"]},{"id":"https://openalex.org/I75421653","display_name":"University of Missouri\u2013Kansas City","ror":"https://ror.org/01w0d5g70","country_code":"US","type":"education","lineage":["https://openalex.org/I75421653"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sashidhar Gadiraju","raw_affiliation_strings":["Laboratory of Human Molecular Genetics, Children's Mercy Hospital and Clinics, School of Medicine, and School of Interdisciplinary Computer Science and Engineering University of Missouri-Kansas City, Kansas City, MO 64108 USA. sashidharg@yahoo.com","School of Interdisciplinary Computer Science and Engineering, University of Missouri-Kansas City, Kansas City, USA","Laboratory of Human Molecular Genetics, Children's Mercy Hospital and Clinics, School of Medicine, Belgium"],"affiliations":[{"raw_affiliation_string":"Laboratory of Human Molecular Genetics, Children's Mercy Hospital and Clinics, School of Medicine, and School of Interdisciplinary Computer Science and Engineering University of Missouri-Kansas City, Kansas City, MO 64108 USA. sashidharg@yahoo.com","institution_ids":["https://openalex.org/I1328594524","https://openalex.org/I75421653"]},{"raw_affiliation_string":"School of Interdisciplinary Computer Science and Engineering, University of Missouri-Kansas City, Kansas City, USA","institution_ids":["https://openalex.org/I75421653"]},{"raw_affiliation_string":"Laboratory of Human Molecular Genetics, Children's Mercy Hospital and Clinics, School of Medicine, Belgium","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007114974","display_name":"Carrie A. Vyhlidal","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Carrie A Vyhlidal","raw_affiliation_strings":["Section of Developmental and Experimental Pharmacology and Therapeutics, Children's Mercy Hospital and Clinics. School of Medicine, Belgium"],"affiliations":[{"raw_affiliation_string":"Section of Developmental and Experimental Pharmacology and Therapeutics, Children's Mercy Hospital and Clinics. School of Medicine, Belgium","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005624600","display_name":"J. Steven Leeder","orcid":"https://orcid.org/0000-0001-6688-0504"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J Steven Leeder","raw_affiliation_strings":["Section of Developmental and Experimental Pharmacology and Therapeutics, Children's Mercy Hospital and Clinics. School of Medicine, Belgium"],"affiliations":[{"raw_affiliation_string":"Section of Developmental and Experimental Pharmacology and Therapeutics, Children's Mercy Hospital and Clinics. School of Medicine, Belgium","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010680275","display_name":"Peter K. Rogan","orcid":"https://orcid.org/0000-0003-2070-5254"},"institutions":[{"id":"https://openalex.org/I75421653","display_name":"University of Missouri\u2013Kansas City","ror":"https://ror.org/01w0d5g70","country_code":"US","type":"education","lineage":["https://openalex.org/I75421653"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter K Rogan","raw_affiliation_strings":["Laboratory of Human Molecular Genetics, Children's Mercy Hospital and Clinics, School of Medicine, Belgium","School of Interdisciplinary Computer Science and Engineering, University of Missouri-Kansas City, Kansas City, MO, 64108, USA","School of Interdisciplinary Computer Science and Engineering, University of Missouri-Kansas City, Kansas City, USA"],"affiliations":[{"raw_affiliation_string":"Laboratory of Human Molecular Genetics, Children's Mercy Hospital and Clinics, School of Medicine, Belgium","institution_ids":[]},{"raw_affiliation_string":"School of Interdisciplinary Computer Science and Engineering, University of Missouri-Kansas City, Kansas City, MO, 64108, USA","institution_ids":["https://openalex.org/I75421653"]},{"raw_affiliation_string":"School of Interdisciplinary Computer Science and Engineering, University of Missouri-Kansas City, Kansas City, USA","institution_ids":["https://openalex.org/I75421653"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5021785128"],"corresponding_institution_ids":["https://openalex.org/I1328594524","https://openalex.org/I75421653"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.0294,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.74976978,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"4","issue":"1","first_page":"38","last_page":"38"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.8031763434410095},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7125504612922668},{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.6115564107894897},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49825406074523926},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48824313282966614},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.48378774523735046},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.4826405644416809},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.41287943720817566},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37209492921829224},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3695299029350281},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.34476202726364136},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.32413116097450256},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.22958078980445862},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.14822587370872498}],"concepts":[{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.8031763434410095},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7125504612922668},{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.6115564107894897},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49825406074523926},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48824313282966614},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.48378774523735046},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.4826405644416809},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.41287943720817566},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37209492921829224},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3695299029350281},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.34476202726364136},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.32413116097450256},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22958078980445862},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.14822587370872498},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D003199","descriptor_name":"Computer Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003199","descriptor_name":"Computer Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003199","descriptor_name":"Computer Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007257","descriptor_name":"Information Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007257","descriptor_name":"Information Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007257","descriptor_name":"Information Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011237","descriptor_name":"Predictive Value of Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011237","descriptor_name":"Predictive Value of Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011237","descriptor_name":"Predictive Value of Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020218","descriptor_name":"Response Elements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020218","descriptor_name":"Response Elements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020218","descriptor_name":"Response Elements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D022821","descriptor_name":"RNA Splice Sites","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D022821","descriptor_name":"RNA Splice Sites","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D022821","descriptor_name":"RNA Splice Sites","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D024721","descriptor_name":"E-Box Elements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D024721","descriptor_name":"E-Box Elements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D024721","descriptor_name":"E-Box Elements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-4-38","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-4-38","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-4-38","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:12962546","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12962546","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:ir.lib.uwo.ca:biochempub-1015","is_oa":true,"landing_page_url":"https://ir.lib.uwo.ca/biochempub/15","pdf_url":"http://www.biomedcentral.com/1471-2105/4/38","source":{"id":"https://openalex.org/S4306400648","display_name":"Scholarship@Western (Western University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I125749732","host_organization_name":"Western University","host_organization_lineage":["https://openalex.org/I125749732"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Biochemistry Publications","raw_type":"article"},{"id":"pmh:oai:doaj.org/article:6b1f36e6ea3844e18aeb522f85746b61","is_oa":true,"landing_page_url":"https://doaj.org/article/6b1f36e6ea3844e18aeb522f85746b61","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 4, Iss 1, p 38 (2003)","raw_type":"article"},{"id":"pmh:oai:ir.lib.uwo.ca:biochempub-1235","is_oa":false,"landing_page_url":"https://ir.lib.uwo.ca/biochempub/229","pdf_url":null,"source":{"id":"https://openalex.org/S4306400648","display_name":"Scholarship@Western (Western University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I125749732","host_organization_name":"Western University","host_organization_lineage":["https://openalex.org/I125749732"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Biochemistry Publications","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:200970","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/200970","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-4-38","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-4-38","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-4-38","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309568","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06"},{"id":"https://openalex.org/F4320311312","display_name":"University of Missouri-Kansas City","ror":"https://ror.org/01w0d5g70"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2143836724.pdf","grobid_xml":"https://content.openalex.org/works/W2143836724.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1995875735","https://openalex.org/W2001730018","https://openalex.org/W2011301632","https://openalex.org/W2037825961","https://openalex.org/W2051482716","https://openalex.org/W2062888745","https://openalex.org/W2068571674","https://openalex.org/W2091607609","https://openalex.org/W2096074458","https://openalex.org/W2112271889","https://openalex.org/W2115804583","https://openalex.org/W2117549173","https://openalex.org/W2122822098","https://openalex.org/W2129942096","https://openalex.org/W2136726922","https://openalex.org/W2143764289","https://openalex.org/W2165570660","https://openalex.org/W2168436863","https://openalex.org/W2283883132","https://openalex.org/W4235019056"],"related_works":["https://openalex.org/W1971216836","https://openalex.org/W2036927633","https://openalex.org/W2153561273","https://openalex.org/W2152664145","https://openalex.org/W2079197459","https://openalex.org/W2165899269","https://openalex.org/W2236968607","https://openalex.org/W4233525429","https://openalex.org/W2090848290","https://openalex.org/W2146393977"],"abstract_inverted_index":{"Delila-Genome":[0],"was":[1],"used":[2],"to":[3],"scan":[4],"the":[5,43,53,59],"human":[6],"genome":[7,40],"sequence":[8],"with":[9,42],"information":[10,48],"weight":[11,49],"matrices":[12,25,50],"of":[13,39,61,71],"transcription":[14],"factor":[15],"binding":[16,28,63,73],"sites,":[17],"including":[18,30],"PXR/RXRalpha,":[19],"AHR":[20],"and":[21,24,34,45,65],"NF-kappaB":[22],"p50/p65,":[23],"for":[26,69],"RNA":[27],"sites":[29,64],"splice":[31],"donor,":[32],"acceptor,":[33],"SC35":[35],"recognition":[36],"sites.":[37,74],"Comparisons":[38],"scans":[41],"original":[44],"refined":[46,54],"PXR/RXRalpha":[47],"indicate":[51],"that":[52],"model":[55],"more":[56,67],"accurately":[57],"predicts":[58],"strengths":[60],"known":[62],"is":[66],"sensitive":[68],"detection":[70],"novel":[72]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}