{"id":"https://openalex.org/W12390683","doi":"https://doi.org/10.1186/1471-2105-3-29","title":"Simulation of DNA array hybridization experiments and evaluation of critical parameters during subsequent image and data analysis","display_name":"Simulation of DNA array hybridization experiments and evaluation of critical parameters during subsequent image and data analysis","publication_year":2002,"publication_date":"2002-10-22","ids":{"openalex":"https://openalex.org/W12390683","doi":"https://doi.org/10.1186/1471-2105-3-29","mag":"12390683","pmid":"https://pubmed.ncbi.nlm.nih.gov/12390683"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-3-29","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-3-29","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-3-29","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","doyens","jufo-1","ki-jl-1","medline","norway-2"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-3-29","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Christoph K Wierling","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Christoph K Wierling","raw_affiliation_strings":["Department of Vertebrate Genomics, Max-Planck-Institut f\u00fcr Molekulare Genetik, Ihnestrasse 73, D-14195 Berlin-Dahlem, Germany. wierling@molgen.mpg.de"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Vertebrate Genomics, Max-Planck-Institut f\u00fcr Molekulare Genetik, Ihnestrasse 73, D-14195 Berlin-Dahlem, Germany. wierling@molgen.mpg.de","institution_ids":["https://openalex.org/I4210142260"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Matthias Steinfath","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Matthias Steinfath","raw_affiliation_strings":["Department of Vertebrate Genomics, Max-Planck-Institut f\u00fcr Molekulare Genetik, Ihnestrasse 73, D-14195, Berlin-Dahlem, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Vertebrate Genomics, Max-Planck-Institut f\u00fcr Molekulare Genetik, Ihnestrasse 73, D-14195, Berlin-Dahlem, Germany","institution_ids":["https://openalex.org/I4210142260"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Thorsten Elge","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Thorsten Elge","raw_affiliation_strings":["Deutsches Ressourcenzentrum f\u00fcr Genomforschung GmbH, Heubnerweg 6, D-14059, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Deutsches Ressourcenzentrum f\u00fcr Genomforschung GmbH, Heubnerweg 6, D-14059, Berlin, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":null,"display_name":"Steffen Schulze-Kremer","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Steffen Schulze-Kremer","raw_affiliation_strings":["Deutsches Ressourcenzentrum f\u00fcr Genomforschung GmbH, Heubnerweg 6, D-14059, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Deutsches Ressourcenzentrum f\u00fcr Genomforschung GmbH, Heubnerweg 6, D-14059, Berlin, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":null,"display_name":"Pia Aanstad","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pia Aanstad","raw_affiliation_strings":["Department of Biochemistry, University of California, San Francisco, 513 Parnassus Ave, San Francisco, CA, 94143-0448, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of California, San Francisco, 513 Parnassus Ave, San Francisco, CA, 94143-0448, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Matthew Clark","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Matthew Clark","raw_affiliation_strings":["Department of Vertebrate Genomics, Max-Planck-Institut f\u00fcr Molekulare Genetik, Ihnestrasse 73, D-14195, Berlin-Dahlem, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Vertebrate Genomics, Max-Planck-Institut f\u00fcr Molekulare Genetik, Ihnestrasse 73, D-14195, Berlin-Dahlem, Germany","institution_ids":["https://openalex.org/I4210142260"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Hans Lehrach","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hans Lehrach","raw_affiliation_strings":["Department of Vertebrate Genomics, Max-Planck-Institut f\u00fcr Molekulare Genetik, Ihnestrasse 73, D-14195, Berlin-Dahlem, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Vertebrate Genomics, Max-Planck-Institut f\u00fcr Molekulare Genetik, Ihnestrasse 73, D-14195, Berlin-Dahlem, Germany","institution_ids":["https://openalex.org/I4210142260"]}]},{"author_position":"last","author":{"id":null,"display_name":"Ralf Herwig","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ralf Herwig","raw_affiliation_strings":["Department of Vertebrate Genomics, Max-Planck-Institut f\u00fcr Molekulare Genetik, Ihnestrasse 73, D-14195, Berlin-Dahlem, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Vertebrate Genomics, Max-Planck-Institut f\u00fcr Molekulare Genetik, Ihnestrasse 73, D-14195, Berlin-Dahlem, Germany","institution_ids":["https://openalex.org/I4210142260"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I4210142260"],"apc_list":{"value":2990,"currency":"USD","value_usd":2990},"apc_paid":{"value":2990,"currency":"USD","value_usd":2990},"fwci":0.5449,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.60612677,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"3","issue":"1","first_page":"29","last_page":"29"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microarray-hybridization","display_name":"microarray hybridization","score":0.8529999852180481},{"id":"https://openalex.org/keywords/measurement-error","display_name":"measurement error","score":0.7319999933242798},{"id":"https://openalex.org/keywords/image-analysis","display_name":"image analysis","score":0.6610000133514404},{"id":"https://openalex.org/keywords/differential-gene-expression","display_name":"differential gene expression","score":0.7160000205039978},{"id":"https://openalex.org/keywords/background-noise","display_name":"background noise","score":0.7319999933242798},{"id":"https://openalex.org/keywords/experimental-design","display_name":"experimental design","score":0.8159999847412109}],"concepts":[{"id":"https://openalex.org/C15708023","wikidata":"https://www.wikidata.org/wiki/Q80083","display_name":"Humanities","level":1,"score":0.4924958646297455},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.46530184149742126},{"id":"https://openalex.org/C29456083","wikidata":"https://www.wikidata.org/wiki/Q1221899","display_name":"Gynecology","level":1,"score":0.43805941939353943},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2617916166782379}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009693","descriptor_name":"Nucleic Acid Hybridization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009693","descriptor_name":"Nucleic Acid Hybridization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009693","descriptor_name":"Nucleic Acid Hybridization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D018744","descriptor_name":"DNA, Plant","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D018744","descriptor_name":"DNA, Plant","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D018744","descriptor_name":"DNA, Plant","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1186/1471-2105-3-29","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-3-29","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-3-29","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","doyens","jufo-1","ki-jl-1","medline","norway-2"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:12390683","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12390683","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":"Evaluation Study"},{"id":"pmh:oai:europepmc.org:1801435","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/138793","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:138793","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/138793","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:abcab23f751b4d96982c0c38863eb91f","is_oa":false,"landing_page_url":"https://doaj.org/article/abcab23f751b4d96982c0c38863eb91f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 3, Iss 1, p 29 (2002)","raw_type":"article"},{"id":"pmh:oai:edoc.mpg.de:25770","is_oa":false,"landing_page_url":"http://edoc.mpg.de/25770","pdf_url":null,"source":{"id":"https://openalex.org/S4406922265","display_name":"Max Planck Institute for Plasma Physics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, v.3, 29-29 (2002)","raw_type":"Article"},{"id":"pmh:oai:edoc.mpg.de:50252","is_oa":false,"landing_page_url":"http://edoc.mpg.de/50252","pdf_url":null,"source":{"id":"https://openalex.org/S4406922265","display_name":"Max Planck Institute for Plasma Physics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, v.3 (2002)","raw_type":"Article"},{"id":"pmh:oai:pure.mpg.de:item_1586308","is_oa":false,"landing_page_url":"https://hdl.handle.net/11858/00-001M-0000-0010-8B8B-0","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"info:eu-repo/semantics/article"},{"id":"mag:12390683","is_oa":false,"landing_page_url":"https://acikarsiv.ankara.edu.tr/browse/1747/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1186/1471-2105-3-29","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-3-29","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-3-29","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","doyens","jufo-1","ki-jl-1","medline","norway-2"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G2462516143","display_name":"Verbundprojekt: Nationales Genomforschungsnetz - Kernbereich, Anteil MPIMG","funder_award_id":"01GR0105","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W12390683.pdf","grobid_xml":"https://content.openalex.org/works/W12390683.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W1570354362","https://openalex.org/W2000978503","https://openalex.org/W2030456851","https://openalex.org/W2101746550","https://openalex.org/W2122598723","https://openalex.org/W2158188865","https://openalex.org/W2161890424","https://openalex.org/W2163150036"],"related_works":[],"abstract_inverted_index":{"BACKGROUND:":[0],"Gene":[1],"expression":[2,163,221],"analyses":[3,29],"based":[4,58],"on":[5,59,93,143,214],"complex":[6,54,99],"hybridization":[7,55,100,114],"measurements":[8],"have":[9,16],"increased":[10],"rapidly":[11],"in":[12,82,98],"recent":[13],"years":[14],"and":[15,30,41,45,125,127,151,170,219,233],"given":[17],"rise":[18],"to":[19,39,136,175,207,229,234],"a":[20,60,66,159],"huge":[21],"amount":[22,35,68],"of":[23,36,69,74,111,120,140,154,200,211,242],"bioinformatic":[24],"tools":[25,44],"such":[26],"as":[27],"image":[28,149,217],"cluster":[31],"analyses.":[32],"However,":[33],"the":[34,46,72,109,138,152,188,198,209,215,224],"work":[37],"done":[38],"integrate":[40],"evaluate":[42],"these":[43,75,141,176],"corresponding":[47],"experimental":[48,166,239],"procedures":[49],"is":[50],"not":[51,78],"high.":[52],"Although":[53],"experiments":[56,232],"are":[57],"data":[61,115,145,164,167],"production":[62],"pipeline":[63],"that":[64,107],"incorporates":[65],"significant":[67],"error":[70,95,183],"parameters,":[71],"evaluation":[73],"parameters":[76,96,142,172,213,247],"has":[77],"been":[79],"studied":[80],"yet":[81],"sufficient":[83],"detail.":[84],"RESULTS:":[85],"In":[86],"this":[87],"paper":[88],"we":[89],"present":[90],"simulation":[91,132,199],"studies":[92],"several":[94],"arising":[97],"experiments.":[101,202],"A":[102],"general":[103],"tool":[104,204,225],"was":[105,134,205],"developed":[106],"allows":[108],"design":[110],"exactly":[112],"defined":[113],"incorporating,":[116],"for":[117,147,161,197],"example,":[118],"variations":[119],"spot":[121,123],"shapes,":[122],"positions":[124],"local":[126],"global":[128],"background":[129],"noise.":[130],"The":[131],"environment":[133],"used":[135,169,206,228],"judge":[137,208],"influence":[139,210],"subsequent":[144,216],"analysis,":[146],"example":[148],"analysis":[150,189,218],"detection":[153],"differentially":[155],"expressed":[156],"genes.":[157],"As":[158],"guide":[160,230],"simulating":[162],"real":[165],"were":[168,173],"model":[171,196],"adapted":[174],"data.":[177],"Our":[178],"results":[179],"show":[180],"how":[181],"measurement":[182],"can":[184,226,248],"be":[185,227,249],"balanced":[186],"by":[187,237],"tools.":[190],"CONCLUSIONS:":[191],"We":[192],"describe":[193],"an":[194],"implemented":[195],"DNA-array":[201],"This":[203],"critical":[212],"differential":[220],"analysis.":[222],"Furthermore":[223],"future":[231],"improve":[235],"performance":[236],"better":[238],"design.":[240],"Series":[241],"simulated":[243],"images":[244],"varying":[245],"specific":[246],"downloaded":[250],"from":[251],"our":[252],"web-site:":[253],"http://www.molgen.mpg.de/~lh_bioinf/projects/simulation/biotech/":[254]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2026-09-30T09:27:27.532063","created_date":"2025-10-10T00:00:00"}
