{"id":"https://openalex.org/W1528144985","doi":"https://doi.org/10.1186/1471-2105-16-s9-s7","title":"ComiRNet: a web-based system for the analysis of miRNA-gene regulatory networks","display_name":"ComiRNet: a web-based system for the analysis of miRNA-gene regulatory networks","publication_year":2015,"publication_date":"2015-06-01","ids":{"openalex":"https://openalex.org/W1528144985","doi":"https://doi.org/10.1186/1471-2105-16-s9-s7","mag":"1528144985","pmid":"https://pubmed.ncbi.nlm.nih.gov/26051695"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-16-s9-s7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-16-s9-s7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-16-S9-S7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-16-S9-S7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059781945","display_name":"Gianvito Pio","orcid":"https://orcid.org/0000-0003-2520-3616"},"institutions":[{"id":"https://openalex.org/I5561750","display_name":"University of Bari Aldo Moro","ror":"https://ror.org/027ynra39","country_code":"IT","type":"education","lineage":["https://openalex.org/I5561750"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Gianvito Pio","raw_affiliation_strings":["Department of Computer Science, University of Bari Aldo Moro, Via Orabona, 4, I-70125, Bari, Italy","Dept. of Computer Science, University of Bari Aldo Moro, Bari, Italy#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Bari Aldo Moro, Via Orabona, 4, I-70125, Bari, Italy","institution_ids":["https://openalex.org/I5561750"]},{"raw_affiliation_string":"Dept. of Computer Science, University of Bari Aldo Moro, Bari, Italy#TAB#","institution_ids":["https://openalex.org/I5561750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073750332","display_name":"Michelangelo Ceci","orcid":"https://orcid.org/0000-0002-6690-7583"},"institutions":[{"id":"https://openalex.org/I5561750","display_name":"University of Bari Aldo Moro","ror":"https://ror.org/027ynra39","country_code":"IT","type":"education","lineage":["https://openalex.org/I5561750"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Michelangelo Ceci","raw_affiliation_strings":["Department of Computer Science, University of Bari Aldo Moro, Via Orabona, 4, I-70125, Bari, Italy","Dept. of Computer Science, University of Bari Aldo Moro, Bari, Italy#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Bari Aldo Moro, Via Orabona, 4, I-70125, Bari, Italy","institution_ids":["https://openalex.org/I5561750"]},{"raw_affiliation_string":"Dept. of Computer Science, University of Bari Aldo Moro, Bari, Italy#TAB#","institution_ids":["https://openalex.org/I5561750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035789137","display_name":"Donato Malerba","orcid":"https://orcid.org/0000-0001-8432-4608"},"institutions":[{"id":"https://openalex.org/I5561750","display_name":"University of Bari Aldo Moro","ror":"https://ror.org/027ynra39","country_code":"IT","type":"education","lineage":["https://openalex.org/I5561750"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Donato Malerba","raw_affiliation_strings":["Department of Computer Science, University of Bari Aldo Moro, Via Orabona, 4, I-70125, Bari, Italy","Dept. of Computer Science, University of Bari Aldo Moro, Bari, Italy#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Bari Aldo Moro, Via Orabona, 4, I-70125, Bari, Italy","institution_ids":["https://openalex.org/I5561750"]},{"raw_affiliation_string":"Dept. of Computer Science, University of Bari Aldo Moro, Bari, Italy#TAB#","institution_ids":["https://openalex.org/I5561750"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009519494","display_name":"Domenica D\u2019Elia","orcid":"https://orcid.org/0000-0003-3787-3836"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Domenica D'Elia","raw_affiliation_strings":["CNR, Institute for Biomedical Technologies, Via Amendola 122/D, I-70126, Bari, Italy","CNR, Institute for Biomedical Technologies, Bari, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNR, Institute for Biomedical Technologies, Via Amendola 122/D, I-70126, Bari, Italy","institution_ids":[]},{"raw_affiliation_string":"CNR, Institute for Biomedical Technologies, Bari, Italy","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5073750332"],"corresponding_institution_ids":["https://openalex.org/I5561750"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":2.5685,"has_fulltext":true,"cited_by_count":45,"citation_normalized_percentile":{"value":0.89517977,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"16","issue":"S9","first_page":"S7","last_page":"S7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.8960000276565552,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.8960000276565552,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.021199999377131462,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.00989999994635582,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6043665409088135},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.6016173362731934},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5616078972816467},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5155518054962158},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5095246434211731},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5069058537483215},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4505690336227417},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.42276620864868164},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.40639302134513855},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32430145144462585},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3157562017440796},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23054787516593933},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1388034224510193}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6043665409088135},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.6016173362731934},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5616078972816467},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5155518054962158},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5095246434211731},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5069058537483215},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4505690336227417},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.42276620864868164},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.40639302134513855},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32430145144462585},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3157562017440796},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23054787516593933},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1388034224510193},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-16-s9-s7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-16-s9-s7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-16-S9-S7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26051695","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26051695","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:3443141","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4464030","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:ricerca.uniba.it:11586/187936","is_oa":true,"landing_page_url":"http://hdl.handle.net/11586/187936","pdf_url":null,"source":{"id":"https://openalex.org/S4377196296","display_name":"CINECA IRIS Institutional Research Information System (University of Bari Aldo Moro)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5561750","host_organization_name":"University of Bari Aldo Moro","host_organization_lineage":["https://openalex.org/I5561750"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-16-s9-s7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-16-s9-s7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-16-S9-S7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4399999976158142,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G3106033258","display_name":"Learning from Massive, Incompletely annotated, and Structured Data","funder_award_id":"612944","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8586694874","display_name":null,"funder_award_id":"ICT-2013-612944","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321873","display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca","ror":"https://ror.org/0166hxq48"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1528144985.pdf","grobid_xml":"https://content.openalex.org/works/W1528144985.grobid-xml"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W122736534","https://openalex.org/W144423133","https://openalex.org/W1512182938","https://openalex.org/W1523762189","https://openalex.org/W1972163114","https://openalex.org/W1978134915","https://openalex.org/W1980948656","https://openalex.org/W1984621921","https://openalex.org/W1988925753","https://openalex.org/W2000491596","https://openalex.org/W2001508508","https://openalex.org/W2009326616","https://openalex.org/W2016106370","https://openalex.org/W2025309753","https://openalex.org/W2025319925","https://openalex.org/W2034562813","https://openalex.org/W2042898046","https://openalex.org/W2050869737","https://openalex.org/W2059073003","https://openalex.org/W2065831401","https://openalex.org/W2067841476","https://openalex.org/W2070232376","https://openalex.org/W2070571588","https://openalex.org/W2080018357","https://openalex.org/W2083381199","https://openalex.org/W2084259236","https://openalex.org/W2091510848","https://openalex.org/W2095619968","https://openalex.org/W2105197182","https://openalex.org/W2105924489","https://openalex.org/W2107580398","https://openalex.org/W2109761160","https://openalex.org/W2112267492","https://openalex.org/W2112370482","https://openalex.org/W2112397593","https://openalex.org/W2116661471","https://openalex.org/W2120895400","https://openalex.org/W2123958887","https://openalex.org/W2128219894","https://openalex.org/W2128220972","https://openalex.org/W2138664009","https://openalex.org/W2146980885","https://openalex.org/W2159839388","https://openalex.org/W2168930979","https://openalex.org/W2171629651","https://openalex.org/W2502759836","https://openalex.org/W4213060373","https://openalex.org/W4240861547","https://openalex.org/W4246413330","https://openalex.org/W4250090323"],"related_works":["https://openalex.org/W2047434558","https://openalex.org/W2144261578","https://openalex.org/W1551232230","https://openalex.org/W2561772691","https://openalex.org/W3034470721","https://openalex.org/W2912681691","https://openalex.org/W2396105383","https://openalex.org/W2142355441","https://openalex.org/W2073764144","https://openalex.org/W2108668859"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,260],"understanding":[2],"of":[3,7,15,23,26,54,62,86,92,99,128,137,182,227,251,258],"mechanisms":[4],"and":[5,19,39,58,95,118,122,133,140,171,192,241],"functions":[6,139],"microRNAs":[8],"(miRNAs)":[9],"is":[10,109],"fundamental":[11,78],"for":[12,20,79,83,89,96,125,134,208],"the":[13,21,24,48,52,59,63,84,90,97,126,135,173,179,186,210,225],"study":[14,127],"many":[16,27],"biological":[17,215],"processes":[18,216],"elucidation":[22,61,98],"pathogenesis":[25],"human":[28,239],"diseases.":[29],"Technological":[30],"advances":[31],"represented":[32],"by":[33,147,217],"high-throughput":[34],"technologies,":[35],"such":[36],"as":[37,244,246],"microarray":[38],"next-generation":[40],"sequencing,":[41],"have":[42,73],"significantly":[43],"aided":[44],"miRNA":[45,56,106,138],"research":[46],"in":[47,143,213,224],"last":[49],"decade.":[50],"Nevertheless,":[51],"identification":[53,91],"true":[55],"targets":[57,94],"complete":[60],"rules":[64],"governing":[65],"their":[66,93,100,221],"functional":[67],"targeting":[68],"remain":[69],"nebulous.":[70],"Computational":[71],"tools":[72,124],"been":[74],"proven":[75],"to":[76,115,161,189],"be":[77,263],"guiding":[80],"experimental":[81],"validations":[82],"discovery":[85,136],"new":[87],"miRNAs,":[88],"regulatory":[101,199],"mechanisms.":[102,141],"DESCRIPTION:":[103],"ComiRNet":[104,144,203],"(Co-clustered":[105],"Regulatory":[107],"Networks)":[108],"a":[110,148,155,205],"web-based":[111],"database":[112,261],"specifically":[113],"designed":[114],"provide":[116],"biologists":[117],"clinicians":[119],"with":[120,185],"user-friendly":[121],"effective":[123],"miRNA-gene":[129,163,198],"target":[130,164],"interaction":[131],"data":[132,219],"Data":[142],"are":[145],"produced":[146,183],"combined":[149],"computational":[150],"approach":[151],"based":[152],"on:":[153],"1)":[154],"semi-supervised":[156],"ensemble-based":[157],"classifier,":[158],"which":[159,177,252],"learns":[160],"combine":[162],"interactions":[165],"(MTIs)":[166],"from":[167],"several":[168],"prediction":[169],"algorithms,":[170],"2)":[172],"biclustering":[174],"algorithm":[175],"HOCCLUS2,":[176],"exploits":[178],"large":[180],"set":[181],"predictions,":[184],"associated":[187],"probabilities,":[188],"identify":[190],"overlapping":[191],"hierarchically":[193],"organized":[194],"biclusters":[195],"that":[196],"represent":[197],"networks":[200],"(MGRNs).":[201],"CONCLUSIONS:":[202],"represents":[204,253],"valuable":[206],"resource":[207],"elucidating":[209],"miRNAs'":[211],"role":[212],"complex":[214],"exploiting":[218],"on":[220],"putative":[222],"function":[223],"context":[226],"MGRNs.":[228],"ComiRnet":[229],"currently":[230],"stores":[231],"about":[232],"5":[233],"million":[234],"predicted":[235],"MTIs":[236],"between":[237],"934":[238],"miRNAs":[240],"30,875":[242],"mRNAs,":[243],"well":[245],"15":[247],"bicluster":[248],"hierarchies,":[249],"each":[250],"MGRNs":[254],"at":[255],"different":[256],"levels":[257],"granularity.":[259],"can":[262],"freely":[264],"accessed":[265],"at:":[266],"http://comirnet.di.uniba.it.":[267]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":13},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
