{"id":"https://openalex.org/W1593792201","doi":"https://doi.org/10.1186/1471-2105-16-s8-a3","title":"Taxonomic and functional diversity of microbial community from a mining environment","display_name":"Taxonomic and functional diversity of microbial community from a mining environment","publication_year":2015,"publication_date":"2015-04-30","ids":{"openalex":"https://openalex.org/W1593792201","doi":"https://doi.org/10.1186/1471-2105-16-s8-a3","mag":"1593792201"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-16-s8-a3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-16-s8-a3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-16-S8-A3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-16-S8-A3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050748205","display_name":"Julliane Dutra Medeiros","orcid":"https://orcid.org/0000-0002-1049-9410"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Julliane D Medeiros","raw_affiliation_strings":["Universidade Federal de Minas Gerais, Minas Gerais, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universidade Federal de Minas Gerais, Minas Gerais, Brazil","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101522021","display_name":"Laura Rabelo Leite","orcid":"https://orcid.org/0000-0001-5355-104X"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Laura R Leite","raw_affiliation_strings":["Universidade Federal de Minas Gerais, Minas Gerais, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universidade Federal de Minas Gerais, Minas Gerais, Brazil","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Sara Cuadros-Orellana","orcid":null},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Sara Cuadros-Orellana","raw_affiliation_strings":["CPqRR/Fiocruz, Minas Gerais, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CPqRR/Fiocruz, Minas Gerais, Brazil","institution_ids":["https://openalex.org/I52325"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048496084","display_name":"Guilherme Oliveira","orcid":"https://orcid.org/0000-0003-0054-3438"},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Guilherme Oliveira","raw_affiliation_strings":["CPqRR/Fiocruz, Minas Gerais, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CPqRR/Fiocruz, Minas Gerais, Brazil","institution_ids":["https://openalex.org/I52325"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5048496084"],"corresponding_institution_ids":["https://openalex.org/I52325"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.163,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.7821892,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"16","issue":"S8","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11923","display_name":"Mine drainage and remediation techniques","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2304","display_name":"Environmental Chemistry"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11923","display_name":"Mine drainage and remediation techniques","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2304","display_name":"Environmental Chemistry"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11073","display_name":"Metal Extraction and Bioleaching","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11933","display_name":"Mining and Resource Management","score":0.977400004863739,"subfield":{"id":"https://openalex.org/subfields/2215","display_name":"Building and Construction"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.815888524055481},{"id":"https://openalex.org/keywords/acid-mine-drainage","display_name":"Acid mine drainage","score":0.8130714893341064},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6571242809295654},{"id":"https://openalex.org/keywords/bioremediation","display_name":"Bioremediation","score":0.5395801067352295},{"id":"https://openalex.org/keywords/environmental-science","display_name":"Environmental science","score":0.393026202917099},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32694894075393677},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.30809080600738525},{"id":"https://openalex.org/keywords/environmental-chemistry","display_name":"Environmental chemistry","score":0.2863898277282715},{"id":"https://openalex.org/keywords/contamination","display_name":"Contamination","score":0.2710123658180237},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.11975309252738953}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.815888524055481},{"id":"https://openalex.org/C2779889824","wikidata":"https://www.wikidata.org/wiki/Q341381","display_name":"Acid mine drainage","level":2,"score":0.8130714893341064},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6571242809295654},{"id":"https://openalex.org/C2124996","wikidata":"https://www.wikidata.org/wiki/Q816441","display_name":"Bioremediation","level":3,"score":0.5395801067352295},{"id":"https://openalex.org/C39432304","wikidata":"https://www.wikidata.org/wiki/Q188847","display_name":"Environmental science","level":0,"score":0.393026202917099},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32694894075393677},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.30809080600738525},{"id":"https://openalex.org/C107872376","wikidata":"https://www.wikidata.org/wiki/Q321355","display_name":"Environmental chemistry","level":1,"score":0.2863898277282715},{"id":"https://openalex.org/C112570922","wikidata":"https://www.wikidata.org/wiki/Q60528603","display_name":"Contamination","level":2,"score":0.2710123658180237},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.11975309252738953},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1186/1471-2105-16-s8-a3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-16-s8-a3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-16-S8-A3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:3389586","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4423741","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-16-s8-a3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-16-s8-a3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-16-S8-A3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1593792201.pdf","grobid_xml":"https://content.openalex.org/works/W1593792201.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2101034451","https://openalex.org/W179045781","https://openalex.org/W2415483442","https://openalex.org/W2341627835","https://openalex.org/W2995279113","https://openalex.org/W2370001587","https://openalex.org/W1498589786","https://openalex.org/W1995777602","https://openalex.org/W3152587882","https://openalex.org/W1581959246"],"abstract_inverted_index":{"Biomining":[0,234],"uses":[1,235],"acidophilic":[2,236],"and":[3,10,40,44,65,72,104,123,128,162,173,191,204,237,244,261,266,296,311,325,339,349,366,388,399],"chemolithotrophic":[4,238],"microbes":[5,239],"capable":[6,240],"of":[7,15,21,32,56,96,132,141,166,241,249,270,279,344,372,409],"oxidizing":[8,242],"iron":[9,243],"sulfur":[11,245,384],"to":[12,53,86,100,185,217,225,246,390],"recover":[13,247],"metals":[14,248],"interest":[16,250],"from":[17,125,148,251,263,286,330],"complex":[18,252],"minerals.":[19,253],"One":[20],"the":[22,30,62,66,102,113,126,163,167,187,195,201,218,227,264,297,300,364,370,395,403],"most":[23,315],"critical":[24],"issues":[25],"in":[26,70,91,108,112,318,347,361],"mining":[27,110,119,143,257,281],"environments":[28],"is":[29,74],"generation":[31],"acid":[33,118,256],"mine":[34],"drainage":[35,120,258],"(AMD)":[36],"that":[37,136,194,274],"pollutes":[38],"water":[39,124,149,219,262,287,304],"sediments":[41,319],"with":[42,155,293],"acids":[43],"metals.":[45],"The":[46,58,94,145,283,314],"Sulfate-reducing":[47],"bacteria":[48],"(SBR)":[49],"are":[50],"an":[51,342],"alternative":[52],"bioremediate":[54],"contamination":[55],"AMD.":[57],"current":[59],"knowledge":[60],"on":[61,153,178,200,291,303,402],"microbial":[63,106,196],"diversity":[64,107,197],"metabolic":[67],"pathways":[68],"involved":[69],"bioming":[71],"bioremediation":[73],"still":[75],"limited.":[76],"In":[77],"this":[78,97],"context,":[79],"metagenomics":[80],"has":[81],"become":[82],"a":[83,109,133,271],"valuable":[84],"tool":[85],"investigate":[87],"previously":[88],"uncultured":[89],"microorganisms":[90],"environmental":[92],"samples.":[93,351],"aim":[95],"study":[98],"was":[99,151,160,170,198,223,289,341,355],"assess":[101],"taxonomic":[103],"functional":[105],"area":[111],"Brazilian":[114],"Amazon.":[115],"We":[116,182,254,327],"collected":[117,255],"water;":[121,259],"sediment":[122,260,348],"surface":[127,265],"15":[129,267],"meters":[130,268],"depth":[131,269],"tailings":[134,272],"dam":[135,273],"received":[137,275],"~90":[138,276],"million":[139,277],"tons":[140,278],"chalcopyrite":[142,280],"waste.":[144,282],"prokaryotic":[146,284],"biomass":[147,285],"samples":[150,288],"concentrated":[152,290],"filters":[154,292],"0.22m":[156],"pores.":[157],"Metagenomic":[158],"DNA":[159],"isolated":[161],"V4":[164],"region":[165],"16S":[168],"rRNA":[169],"amplified.":[171],"Shotgun":[172],"amplicon":[174],"libraries":[175],"were":[176,306,320],"sequenced":[177],"Ion":[179],"Torrent":[180],"platform.":[181],"used":[183,224,356],"Qiime":[184],"cluster":[186],"sequences":[188],"into":[189],"OTU":[190],"we":[192,375],"observed":[193,376],"higher":[199],"sedi-":[202],"ments":[203],"AMD":[205,212,350],"metagenomes":[206,305],"(Sediment":[207],"-":[208,213],"Chao:1988;":[209],"Shannon:6.05":[210],"/":[211],"Chao:2375;":[214],"Shannon:5.03)":[215],"compared":[216],"(Chao:370;":[220],"Shannon:4.16).":[221],"MG-RAST":[222],"classify":[226,359],"reads":[228,360,377],"(representative":[229],"hit,":[230],"identity":[231],"cut-off":[232],">=75%)":[233],"0.22":[294],">=75%),":[295],"results":[298],"indicate":[299,394],"dominant":[301],"phyla":[302,317],"Proteobacteria":[307,321],"(49.3%),":[308],"Actinobacteria":[309],"(31.6%)":[310],"Bacteroidetes":[312,323],"(7.6%).":[313],"abundant":[316],"(48.7%)":[322],"(17.2%)":[324],"Firmicutes(7.5%).":[326],"analyzed":[328],"OTUs":[329],"specific":[331],"SRB-families":[332],"(Thermodesulfovibrionaceae,":[333],"Desulfobacteraceae,":[334],"Syntrophaceae,":[335],"Peptococcaceae,":[336],"Desulfuromonadaceae,":[337],"Desulfomicrobiaceae)":[338],"there":[340],"enrichment":[343],"these":[345],"families":[346],"Blastx":[352],"against":[353],"NR":[354],"for":[357,397,414],"functionally":[358],"MEGAN":[362],"using":[363],"SEED":[365],"KEGG":[367],"hierarchy.":[368],"Despite":[369],"prevalence":[371],"housekeeping":[373],"functions,":[374],"matching":[378],"relevant":[379],"adaptive":[380],"traits,":[381],"such":[382],"as":[383],"oxidation,":[385],"ABC":[386],"transporters":[387],"resistance":[389],"metal.":[391],"Our":[392],"data":[393],"potential":[396],"biomining":[398],"biore-":[400],"mediation":[401],"studied":[404],"environments,":[405],"however":[406],"new":[407],"rounds":[408],"sequencing":[410],"must":[411],"be":[412],"done":[413],"more":[415],"conclusive":[416],"results.":[417]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
