{"id":"https://openalex.org/W1601889133","doi":"https://doi.org/10.1186/1471-2105-16-s3-a5","title":"An exploration of the 3D chemical space has highlighted a specific shape profile for the compounds intended to inhibit protein-protein interactions","display_name":"An exploration of the 3D chemical space has highlighted a specific shape profile for the compounds intended to inhibit protein-protein interactions","publication_year":2015,"publication_date":"2015-02-13","ids":{"openalex":"https://openalex.org/W1601889133","doi":"https://doi.org/10.1186/1471-2105-16-s3-a5","mag":"1601889133"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-16-s3-a5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-16-s3-a5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-16-S3-A5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-16-S3-A5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078099175","display_name":"M\u00e9laine A. Kuenemann","orcid":"https://orcid.org/0000-0001-5317-2111"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I169173203","display_name":"D\u00e9l\u00e9gation Paris 7","ror":"https://ror.org/00bw5n526","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I169173203"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"M\u00e9laine A Kuenemann","raw_affiliation_strings":["Inserm, U973, Paris, 75013, France","Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, UMRS 973 Inserm, Paris, 75013, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Inserm, U973, Paris, 75013, France","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, UMRS 973 Inserm, Paris, 75013, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I169173203","https://openalex.org/I204730241","https://openalex.org/I4210091437"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013189942","display_name":"Laura M. L. Bourbon","orcid":null},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I169173203","display_name":"D\u00e9l\u00e9gation Paris 7","ror":"https://ror.org/00bw5n526","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I169173203"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Laura ML Bourbon","raw_affiliation_strings":["Inserm, U973, Paris, 75013, France","Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, UMRS 973 Inserm, Paris, 75013, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Inserm, U973, Paris, 75013, France","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, UMRS 973 Inserm, Paris, 75013, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I169173203","https://openalex.org/I204730241","https://openalex.org/I4210091437"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063303881","display_name":"C\u00e9line M. Labb\u00e9","orcid":null},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I169173203","display_name":"D\u00e9l\u00e9gation Paris 7","ror":"https://ror.org/00bw5n526","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I169173203"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"C\u00e9line M Labb\u00e9","raw_affiliation_strings":["CDithem, Facult\u00e9 de Pharmacie, 1 rue du Prof Laguesse, 59000, Lille, France","Inserm, U973, Paris, 75013, France","Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, UMRS 973 Inserm, Paris, 75013, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CDithem, Facult\u00e9 de Pharmacie, 1 rue du Prof Laguesse, 59000, Lille, France","institution_ids":["https://openalex.org/I2279609970"]},{"raw_affiliation_string":"Inserm, U973, Paris, 75013, France","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, UMRS 973 Inserm, Paris, 75013, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I169173203","https://openalex.org/I204730241","https://openalex.org/I4210091437"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051589659","display_name":"Bruno O. Villoutreix","orcid":"https://orcid.org/0000-0002-6456-7730"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I169173203","display_name":"D\u00e9l\u00e9gation Paris 7","ror":"https://ror.org/00bw5n526","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I169173203"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Bruno O Villoutreix","raw_affiliation_strings":["CDithem, Facult\u00e9 de Pharmacie, 1 rue du Prof Laguesse, 59000, Lille, France","Inserm, U973, Paris, 75013, France","Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, UMRS 973 Inserm, Paris, 75013, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CDithem, Facult\u00e9 de Pharmacie, 1 rue du Prof Laguesse, 59000, Lille, France","institution_ids":["https://openalex.org/I2279609970"]},{"raw_affiliation_string":"Inserm, U973, Paris, 75013, France","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, UMRS 973 Inserm, Paris, 75013, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I169173203","https://openalex.org/I204730241","https://openalex.org/I4210091437"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064154680","display_name":"Olivier Sp\u00e9randio","orcid":"https://orcid.org/0000-0001-6610-2729"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I169173203","display_name":"D\u00e9l\u00e9gation Paris 7","ror":"https://ror.org/00bw5n526","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I169173203"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Olivier Sperandio","raw_affiliation_strings":["CDithem, Facult\u00e9 de Pharmacie, 1 rue du Prof Laguesse, 59000, Lille, France","Inserm, U973, Paris, 75013, France","Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, UMRS 973 Inserm, Paris, 75013, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CDithem, Facult\u00e9 de Pharmacie, 1 rue du Prof Laguesse, 59000, Lille, France","institution_ids":["https://openalex.org/I2279609970"]},{"raw_affiliation_string":"Inserm, U973, Paris, 75013, France","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, UMRS 973 Inserm, Paris, 75013, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I169173203","https://openalex.org/I204730241","https://openalex.org/I4210091437"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5064154680"],"corresponding_institution_ids":["https://openalex.org/I154526488","https://openalex.org/I169173203","https://openalex.org/I204730241","https://openalex.org/I2279609970","https://openalex.org/I4210091437"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":1.3388,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.81368821,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"16","issue":"S3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9754999876022339,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6590100526809692},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.5038809180259705},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4442002773284912},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.43654298782348633},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.41299688816070557},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.36362195014953613},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.34137940406799316},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3341604769229889},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.17720019817352295}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6590100526809692},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.5038809180259705},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4442002773284912},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.43654298782348633},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.41299688816070557},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.36362195014953613},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34137940406799316},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3341604769229889},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.17720019817352295}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1186/1471-2105-16-s3-a5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-16-s3-a5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-16-S3-A5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4340135","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4340135","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-16-s3-a5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-16-s3-a5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-16-S3-A5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1601889133.pdf","grobid_xml":"https://content.openalex.org/works/W1601889133.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W1992229282","https://openalex.org/W2038359277","https://openalex.org/W2092285329","https://openalex.org/W2096864392","https://openalex.org/W2138314961","https://openalex.org/W2162723974"],"related_works":["https://openalex.org/W2480711475","https://openalex.org/W2061997414","https://openalex.org/W1587522533","https://openalex.org/W1996411829","https://openalex.org/W1984523482","https://openalex.org/W2121182182","https://openalex.org/W2791017844","https://openalex.org/W2092688629","https://openalex.org/W2044905153","https://openalex.org/W2561730314"],"abstract_inverted_index":{"The":[0,263,312,323,509],"vital":[1],"role":[2],"of":[3,13,17,25,59,74,77,95,107,113,117,132,141,144,169,180,192,208,216,223,260,277,293,300,325,347,373,399,465,477,483,511,513,516,524,550],"Protein-Protein":[4],"Interactions":[5],"(PPI)":[6],"for":[7],"Life":[8],"makes":[9],"them":[10,50,138],"the":[11,22,44,84,92,103,111,129,162,181,187,190,193,206,209,213,217,224,236,242,252,258,275,294,336,345,362,371,388,397,403,453,463,472,475,501,519,522,525,543],"subject":[12],"a":[14,35,114,290,354,380,414,457,495],"growing":[15],"number":[16],"drug":[18],"discovery":[19],"projects.":[20],"Yet,":[21,431],"specific":[23],"properties":[24,70,85,266],"PPI":[26,60,261,507],"(often":[27],"described":[28],"as":[29,100,270,303,316],"flat,":[30],"large":[31],"and":[32,136,165,219,289,320,391,429,468,474,521,537,540],"hydrophobic)":[33],"require":[34],"dramatic":[36],"paradigm":[37],"shift":[38],"in":[39,241,440],"our":[40,282],"way":[41],"to":[42,48,66,79,122,139,249,251,272,350,376,412,443,455,491,499,531,546],"design":[43,112,532],"small":[45],"compounds":[46,210,225,424,526],"meant":[47],"modulate":[49],"with":[51,186,305,425,518,534],"therapeutic":[52],"perspectives.":[53],"To":[54],"this":[55,72,445,448,514],"end,":[56],"successful":[57],"inhibitors":[58,75,143],"targets":[61,146],"(iPPI)":[62],"may":[63,541],"be":[64,90,413,492],"used":[65],"discover":[67],"what":[68],"singular":[69],"make":[71],"type":[73,515],"capable":[76],"binding":[78],"such":[80],"intricate":[81],"surfaces.":[82],"Among":[83],"from":[86,150,436],"which":[87],"lessons":[88,432],"could":[89,109,171,184,527],"learnt,":[91],"3D":[93,124,196,214],"characteristics":[94,197],"iPPI":[96,108,135,170,247,273,409,437,489,533],"have":[97,127,176],"been":[98,420],"pinpointed":[99],"essential.":[101],"Understanding":[102],"putative":[104],"shape":[105,207],"profile":[106],"help":[110],"new":[115,529],"generation":[116],"inhibitors.":[118],"In":[119],"an":[120,441,548],"attempt":[121,442],"identify":[123],"characteristics,":[125,174],"we":[126,175,450],"collected":[128],"bioactive":[130,438],"conformations":[131,439],"84":[133],"orthosteric":[134],"compared":[137],"those":[140],"1282":[142],"conventional":[145],"(e.g":[147],"enzymes)":[148],"collectively":[149],"different":[151],"databases":[152],"(2P2I":[153],"[":[154,231],"1":[155,201],"],":[156,159,285],"PDBbind[":[157],"2":[158],"PDB).":[160],"Because":[161],"known":[163,411],"heavier":[164],"more":[166,551],"hydrophobic":[167,218,253,484,502],"character":[168],"conceal":[172],"other":[173],"imposed":[177],"that":[178,452],"none":[179],"identified":[182,265],"descriptors":[183,230,327],"correlate":[185],"hydrophobicity":[188,520],"or":[189,212],"size":[191,523],"compound.":[194],"Four":[195],"were":[198,267],"highlighted":[199,326],"(Figure":[200],").":[202],"They":[203],"describe":[204],"either":[205],"(globularity)":[211],"distributions":[215],"hydrophilic":[220,478],"interacting":[221,485],"regions":[222,479],"(IW4,":[226],"EDmin3,":[227],"CW2:":[228],"VolSurf":[229],"3":[232],"]).":[233],"More":[234,487],"specifically":[235],"most":[237,481],"essential":[238],"property":[239,517],"revealed":[240],"analysis":[243],"(EDmin3)":[244],"illustrates":[245],"how":[246],"manage":[248],"bind":[250,456,500],"patches":[254,503],"often":[255,504],"present":[256,505],"at":[257,344,370,506],"core":[259],"targets.":[262],"newly":[264],"further":[268],"confirmed":[269],"characteristic":[271],"using":[274,341,353,367,379],"data":[276],"much":[278],"larger":[279],"datasets":[280],"including":[281,471],"iPPI-DB[":[283],"4":[284],"eDrugs3D[":[286],"5":[287],"]":[288],"representative":[291],"subset":[292],"bindingDB[":[295],"6":[296],"].":[297],"Bioactive":[298],"conformation":[299],"compound":[301,313],"1MQ":[302],"cocrystallized":[304],"Mdm2":[306],"(pdb":[307],"code":[308],"4JVE":[309],")":[310],".":[311],"is":[314,410],"represented":[315],"transparent":[317],"molecular":[318,321,338,364,389,405],"surface":[319,401],"sticks.":[322],"value":[324],"are":[328,433],":":[329],"EDmin3":[330],"=":[331,358,384,393],"-3.18":[332],"kcal/mol":[333,352,378],"(represented":[334,360,386,395],"by":[335,361,387,396,494],"green":[337],"field":[339,365],"calculated":[340,366],"Moe":[342,368],"2012.10":[343,369],"levels":[346,372],"energy":[348,374],"equal":[349,375],"-2.4":[351],"dry":[355],"probe),":[356,382],"IW4":[357],"4.13":[359],"pink":[363,400],"-5.5":[377],"water":[381],"glob":[383],"0.20":[385],"surface),":[390],"CW2":[392],"1.90":[394],"proportion":[398],"over":[402],"full":[404],"surface).":[406],"Identifying":[407],"low-molecular-weight":[408],"difficult":[415],"task.":[416],"This":[417],"has":[418],"usually":[419],"translated":[421],"into":[422],"designing":[423],"higher":[426,497],"size,":[427],"aromaticity,":[428],"hydrophobicity.":[430],"being":[434],"learnt":[435],"circumvent":[444],"trend.":[446],"During":[447],"analysis,":[449],"demonstrated":[451],"capacity":[454],"protein-protein":[458],"interface":[459],"partially":[460],"rely":[461],"on":[462],"combination":[464],"several":[466],"structural":[467],"electrostatic":[469],"features":[470],"globularity":[473],"distribution":[476],"but":[480],"importantly":[482],"regions.":[486],"distinctively,":[488],"seem":[490],"characterized":[493],"significantly":[496],"efficiency":[498],"interfaces.":[508],"absence":[510],"correlation":[512],"open":[528],"ways":[530],"improved":[535],"ligand":[536],"lipophilic":[538],"efficiencies":[539],"allow":[542],"scientific":[544],"community":[545],"anticipate":[547],"era":[549],"drug-like":[552],"iPPI.":[553]},"counts_by_year":[{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
