{"id":"https://openalex.org/W2116719561","doi":"https://doi.org/10.1186/1471-2105-16-s13-s12","title":"Computational identification of genetic subnetwork modules associated with maize defense response to Fusarium verticillioides","display_name":"Computational identification of genetic subnetwork modules associated with maize defense response to Fusarium verticillioides","publication_year":2015,"publication_date":"2015-09-26","ids":{"openalex":"https://openalex.org/W2116719561","doi":"https://doi.org/10.1186/1471-2105-16-s13-s12","mag":"2116719561","pmid":"https://pubmed.ncbi.nlm.nih.gov/26423221"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-16-s13-s12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-16-s13-s12","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-16-S13-S12","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-16-S13-S12","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042896940","display_name":"Man S. Kim","orcid":"https://orcid.org/0000-0002-1507-9829"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mansuck Kim","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX, USA","Department of Electrical and Computer Engineering, Texas A&M University,College Station,USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX, USA","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Texas A&M University,College Station,USA","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100765107","display_name":"Huan Zhang","orcid":"https://orcid.org/0000-0002-6190-296X"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Huan Zhang","raw_affiliation_strings":["Department of Plant Pathology & Microbiology, Texas A&M University, College Station, TX, USA","Department of Plant Pathology and Microbiology, Texas A&M University,College Station,USA"],"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology & Microbiology, Texas A&M University, College Station, TX, USA","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"Department of Plant Pathology and Microbiology, Texas A&M University,College Station,USA","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090522654","display_name":"Charles P. Woloshuk","orcid":"https://orcid.org/0000-0003-3672-4943"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charles Woloshuk","raw_affiliation_strings":["Department of Botany & Plant Pathology, Purdue University, West Lafayette, IN, USA","Department of Botany and Plant Pathology, Purdue University, West Lafayette, USA"],"affiliations":[{"raw_affiliation_string":"Department of Botany & Plant Pathology, Purdue University, West Lafayette, IN, USA","institution_ids":["https://openalex.org/I219193219"]},{"raw_affiliation_string":"Department of Botany and Plant Pathology, Purdue University, West Lafayette, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103078036","display_name":"Won\u2010Bo Shim","orcid":"https://orcid.org/0000-0002-1423-7813"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Won-Bo Shim","raw_affiliation_strings":["Department of Plant Pathology & Microbiology, Texas A&M University, College Station, TX, USA","Department of Plant Pathology and Microbiology, Texas A&M University,College Station,USA"],"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology & Microbiology, Texas A&M University, College Station, TX, USA","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"Department of Plant Pathology and Microbiology, Texas A&M University,College Station,USA","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081620315","display_name":"Byung-Jun Yoon","orcid":"https://orcid.org/0000-0001-9328-1101"},"institutions":[{"id":"https://openalex.org/I4210144839","display_name":"Hamad bin Khalifa University","ror":"https://ror.org/03eyq4y97","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210144839"]},{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["QA","US"],"is_corresponding":false,"raw_author_name":"Byung-Jun Yoon","raw_affiliation_strings":["College of Science and Engineering, Hamad bin Khalifa University (HBKU), Doha, Qatar","Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX, USA","Department of Electrical and Computer Engineering, Texas A&M University, College Station, USA"],"affiliations":[{"raw_affiliation_string":"College of Science and Engineering, Hamad bin Khalifa University (HBKU), Doha, Qatar","institution_ids":["https://openalex.org/I4210144839"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX, USA","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Texas A&M University, College Station, USA","institution_ids":["https://openalex.org/I91045830"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5042896940"],"corresponding_institution_ids":["https://openalex.org/I91045830"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.6198,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.92382982,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"16","issue":"S13","first_page":"S12","last_page":"S12"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10825","display_name":"Plant Pathogens and Fungal Diseases","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9890000224113464,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8451262712478638},{"id":"https://openalex.org/keywords/virulence","display_name":"Virulence","score":0.7125375866889954},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5320910811424255},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5251469612121582},{"id":"https://openalex.org/keywords/fusarium","display_name":"Fusarium","score":0.5163305997848511},{"id":"https://openalex.org/keywords/subnetwork","display_name":"Subnetwork","score":0.43751460313796997},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37940579652786255}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8451262712478638},{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.7125375866889954},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5320910811424255},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5251469612121582},{"id":"https://openalex.org/C2778867309","wikidata":"https://www.wikidata.org/wiki/Q131672","display_name":"Fusarium","level":2,"score":0.5163305997848511},{"id":"https://openalex.org/C2780186347","wikidata":"https://www.wikidata.org/wiki/Q11414","display_name":"Subnetwork","level":2,"score":0.43751460313796997},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37940579652786255},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003313","descriptor_name":"Zea mays","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003313","descriptor_name":"Zea mays","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003313","descriptor_name":"Zea mays","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005670","descriptor_name":"Fusarium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005670","descriptor_name":"Fusarium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005670","descriptor_name":"Fusarium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-16-s13-s12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-16-s13-s12","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-16-S13-S12","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26423221","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26423221","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:3575057","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4597171","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/26977189","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/Computational_identification_of_genetic_subnetwork_modules_associated_with_maize_defense_response_to_Fusarium_verticillioides/26977189","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:oaktrust.library.tamu.edu:1969.1/182245","is_oa":false,"landing_page_url":"https://hdl.handle.net/1969.1/182245","pdf_url":null,"source":{"id":"https://openalex.org/S4306400291","display_name":"OakTrust (Texas A&M University Libraries)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I91045830","host_organization_name":"Texas A&M University","host_organization_lineage":["https://openalex.org/I91045830"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.1186/1471-2105-16-s13-s12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-16-s13-s12","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-16-S13-S12","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2633145439","display_name":null,"funder_award_id":"2013-68004","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G3058795755","display_name":null,"funder_award_id":"2013-68004-20359","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"},{"id":"https://openalex.org/G5921281487","display_name":null,"funder_award_id":"number","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6083714998","display_name":"CAREER: Models and Algorithms for Comparative Analysis of Biological Networks","funder_award_id":"1149544","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G712506091","display_name":null,"funder_award_id":"CCF-1149544","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8102679120","display_name":null,"funder_award_id":"2013-68004-20359","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320332299","display_name":"National Institute of Food and Agriculture","ror":"https://ror.org/05qx3fv49"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2116719561.pdf","grobid_xml":"https://content.openalex.org/works/W2116719561.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1942543154","https://openalex.org/W1972194969","https://openalex.org/W1973527910","https://openalex.org/W1990385436","https://openalex.org/W1998767915","https://openalex.org/W2010854320","https://openalex.org/W2014704298","https://openalex.org/W2025319590","https://openalex.org/W2040210770","https://openalex.org/W2058237157","https://openalex.org/W2061912939","https://openalex.org/W2087149194","https://openalex.org/W2093995398","https://openalex.org/W2096724833","https://openalex.org/W2108234281","https://openalex.org/W2110065044","https://openalex.org/W2110603299","https://openalex.org/W2110803586","https://openalex.org/W2139643098","https://openalex.org/W2139919514","https://openalex.org/W2148740297","https://openalex.org/W2154947819","https://openalex.org/W2170265914","https://openalex.org/W2170551349","https://openalex.org/W2171468101","https://openalex.org/W2352928649","https://openalex.org/W2525737656","https://openalex.org/W4200351727"],"related_works":["https://openalex.org/W2060724872","https://openalex.org/W2082094785","https://openalex.org/W2202198356","https://openalex.org/W3087203342","https://openalex.org/W2377184161","https://openalex.org/W228984114","https://openalex.org/W2090026684","https://openalex.org/W4226360758","https://openalex.org/W2151093953","https://openalex.org/W2076372398"],"abstract_inverted_index":{"Through":[0],"our":[1,14],"RNA-seq":[2],"data":[3,30],"analysis,":[4],"we":[5],"have":[6],"shown":[7],"that":[8,37],"a":[9,32],"network-based":[10],"approach":[11],"can":[12,42],"enhance":[13],"understanding":[15],"of":[16],"the":[17,28,38],"complicated":[18],"host-pathogen":[19],"interactions":[20],"between":[21],"maize":[22],"and":[23],"F.":[24],"verticillioides":[25],"by":[26],"interpreting":[27],"transcriptome":[29],"in":[31,56],"system-oriented":[33],"manner.":[34],"We":[35],"expect":[36],"proposed":[39],"analytic":[40],"pipeline":[41],"also":[43],"be":[44],"adapted":[45],"for":[46],"investigating":[47],"potential":[48],"functional":[49],"modules":[50],"associated":[51],"with":[52],"host":[53],"defense":[54],"response":[55],"diverse":[57],"plant-pathogen":[58],"interactions.":[59]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2015,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
