{"id":"https://openalex.org/W1874869336","doi":"https://doi.org/10.1186/1471-2105-16-s10-s3","title":"Extending the evaluation of Genia Event task toward knowledge base construction and comparison to Gene Regulation Ontology task","display_name":"Extending the evaluation of Genia Event task toward knowledge base construction and comparison to Gene Regulation Ontology task","publication_year":2015,"publication_date":"2015-06-23","ids":{"openalex":"https://openalex.org/W1874869336","doi":"https://doi.org/10.1186/1471-2105-16-s10-s3","mag":"1874869336","pmid":"https://pubmed.ncbi.nlm.nih.gov/26202680"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-16-s10-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-16-s10-s3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-16-S10-S3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-16-S10-S3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063923711","display_name":"Jin-Dong Kim","orcid":"https://orcid.org/0000-0001-9660-6303"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I4210158934","display_name":"Research Organization of Information and Systems","ror":"https://ror.org/04p4e8t29","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210158934"]}],"countries":["JP","SG"],"is_corresponding":false,"raw_author_name":"Jin-Dong Kim","raw_affiliation_strings":["Database Center for Life Science, Research Organization of Information and Systems, 178-4-4 Wakashiba, Kashiwa, Japan","Nanyang Technological University, School of Computer Engineering, Block N4 #02a-32, Nanyang Avenue, Singapore, 639798","Database Center for Life Science, Research Organization of Information and Systems, Kashiwa, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Database Center for Life Science, Research Organization of Information and Systems, 178-4-4 Wakashiba, Kashiwa, Japan","institution_ids":["https://openalex.org/I4210158934"]},{"raw_affiliation_string":"Nanyang Technological University, School of Computer Engineering, Block N4 #02a-32, Nanyang Avenue, Singapore, 639798","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Database Center for Life Science, Research Organization of Information and Systems, Kashiwa, Japan","institution_ids":["https://openalex.org/I4210158934"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050571650","display_name":"Jung\u2010Jae Kim","orcid":"https://orcid.org/0000-0001-6024-0047"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I4210158934","display_name":"Research Organization of Information and Systems","ror":"https://ror.org/04p4e8t29","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210158934"]}],"countries":["JP","SG"],"is_corresponding":true,"raw_author_name":"Jin-Dong Kim","raw_affiliation_strings":["Database Center for Life Science, Research Organization of Information and Systems, 178-4-4 Wakashiba, Kashiwa, Japan","Nanyang Technological University, School of Computer Engineering, Block N4 #02a-32, Nanyang Avenue, Singapore, 639798","Nanyang Technological University School of Computer Engineering Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Database Center for Life Science, Research Organization of Information and Systems, 178-4-4 Wakashiba, Kashiwa, Japan","institution_ids":["https://openalex.org/I4210158934"]},{"raw_affiliation_string":"Nanyang Technological University, School of Computer Engineering, Block N4 #02a-32, Nanyang Avenue, Singapore, 639798","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Nanyang Technological University School of Computer Engineering Singapore","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100668503","display_name":"Xu Han","orcid":"https://orcid.org/0000-0002-4726-7621"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I4210158934","display_name":"Research Organization of Information and Systems","ror":"https://ror.org/04p4e8t29","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210158934"]}],"countries":["JP","SG"],"is_corresponding":true,"raw_author_name":"Jung-jae Kim","raw_affiliation_strings":["Database Center for Life Science, Research Organization of Information and Systems, 178-4-4 Wakashiba, Kashiwa, Japan","Nanyang Technological University, School of Computer Engineering, Block N4 #02a-32, Nanyang Avenue, Singapore, 639798","Nanyang Technological University School of Computer Engineering Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Database Center for Life Science, Research Organization of Information and Systems, 178-4-4 Wakashiba, Kashiwa, Japan","institution_ids":["https://openalex.org/I4210158934"]},{"raw_affiliation_string":"Nanyang Technological University, School of Computer Engineering, Block N4 #02a-32, Nanyang Avenue, Singapore, 639798","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Nanyang Technological University School of Computer Engineering Singapore","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006224704","display_name":"Dietrich Rebholz\u2010Schuhmann","orcid":"https://orcid.org/0000-0002-1018-0370"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I4210158934","display_name":"Research Organization of Information and Systems","ror":"https://ror.org/04p4e8t29","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210158934"]}],"countries":["CH","JP","SG"],"is_corresponding":false,"raw_author_name":"Jung-jae Kim","raw_affiliation_strings":["Database Center for Life Science, Research Organization of Information and Systems, 178-4-4 Wakashiba, Kashiwa, Japan","Nanyang Technological University, School of Computer Engineering, Block N4 #02a-32, Nanyang Avenue, Singapore, 639798","University of Zurich, Institute of Computational Linguistics, Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Database Center for Life Science, Research Organization of Information and Systems, 178-4-4 Wakashiba, Kashiwa, Japan","institution_ids":["https://openalex.org/I4210158934"]},{"raw_affiliation_string":"Nanyang Technological University, School of Computer Engineering, Block N4 #02a-32, Nanyang Avenue, Singapore, 639798","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"University of Zurich, Institute of Computational Linguistics, Zurich, Switzerland","institution_ids":["https://openalex.org/I202697423"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100668503","display_name":"Xu Han","orcid":"https://orcid.org/0000-0002-4726-7621"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Xu Han","raw_affiliation_strings":["Nanyang Technological University, School of Computer Engineering, Block N4 #02a-32, Nanyang Avenue, Singapore, 639798"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nanyang Technological University, School of Computer Engineering, Block N4 #02a-32, Nanyang Avenue, Singapore, 639798","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006224704","display_name":"Dietrich Rebholz\u2010Schuhmann","orcid":"https://orcid.org/0000-0002-1018-0370"},"institutions":[{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Dietrich Rebholz-Schuhmann","raw_affiliation_strings":["University of Zurich, Institute of Computational Linguistics, Binzm\u00c3\u00bchlestrasse 14, 8050, Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Zurich, Institute of Computational Linguistics, Binzm\u00c3\u00bchlestrasse 14, 8050, Zurich, Switzerland","institution_ids":["https://openalex.org/I202697423"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5050571650","https://openalex.org/A5100668503"],"corresponding_institution_ids":["https://openalex.org/I172675005","https://openalex.org/I4210158934"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.928,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.85692189,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"16","issue":"S10","first_page":"S3","last_page":"S3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6241000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6241000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.27889999747276306,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.027799999341368675,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8363697528839111},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7703943252563477},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.7281704545021057},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6564954519271851},{"id":"https://openalex.org/keywords/sparql","display_name":"SPARQL","score":0.6340422630310059},{"id":"https://openalex.org/keywords/theme","display_name":"Theme (computing)","score":0.5960527062416077},{"id":"https://openalex.org/keywords/perspective","display_name":"Perspective (graphical)","score":0.5761772990226746},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.5422859787940979},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.5322487354278564},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.48328903317451477},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.47907406091690063},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.39154499769210815},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3529053330421448},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.296756774187088},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.28898340463638306},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.208143413066864}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8363697528839111},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7703943252563477},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.7281704545021057},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6564954519271851},{"id":"https://openalex.org/C41009113","wikidata":"https://www.wikidata.org/wiki/Q54871","display_name":"SPARQL","level":4,"score":0.6340422630310059},{"id":"https://openalex.org/C33566652","wikidata":"https://www.wikidata.org/wiki/Q1065927","display_name":"Theme (computing)","level":2,"score":0.5960527062416077},{"id":"https://openalex.org/C12713177","wikidata":"https://www.wikidata.org/wiki/Q1900281","display_name":"Perspective (graphical)","level":2,"score":0.5761772990226746},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.5422859787940979},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.5322487354278564},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.48328903317451477},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.47907406091690063},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.39154499769210815},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3529053330421448},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.296756774187088},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.28898340463638306},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.208143413066864},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-16-s10-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-16-s10-s3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-16-S10-S3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26202680","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26202680","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:dr.ntu.edu.sg:10356/81489","is_oa":true,"landing_page_url":"https://hdl.handle.net/10356/81489","pdf_url":null,"source":{"id":"https://openalex.org/S4306402609","display_name":"DR-NTU (Nanyang Technological University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I172675005","host_organization_name":"Nanyang Technological University","host_organization_lineage":["https://openalex.org/I172675005"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4511578","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4511578","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-16-s10-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-16-s10-s3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-16-S10-S3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Decent work and economic growth","score":0.4300000071525574,"id":"https://metadata.un.org/sdg/8"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1874869336.pdf","grobid_xml":"https://content.openalex.org/works/W1874869336.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W76749362","https://openalex.org/W154351976","https://openalex.org/W197223936","https://openalex.org/W1542417898","https://openalex.org/W1555563750","https://openalex.org/W2011271395","https://openalex.org/W2032566933","https://openalex.org/W2063485028","https://openalex.org/W2075322787","https://openalex.org/W2111639664","https://openalex.org/W2112543617","https://openalex.org/W2114702301","https://openalex.org/W2117809888","https://openalex.org/W2136345497","https://openalex.org/W2149803936","https://openalex.org/W2164010954","https://openalex.org/W2250469303","https://openalex.org/W2250765544","https://openalex.org/W2250892234","https://openalex.org/W2251279337","https://openalex.org/W2289614966","https://openalex.org/W2540149843","https://openalex.org/W2555756618","https://openalex.org/W2914431807","https://openalex.org/W2916355958","https://openalex.org/W2923652028"],"related_works":["https://openalex.org/W137909637","https://openalex.org/W2098306546","https://openalex.org/W2269907498","https://openalex.org/W2120460904","https://openalex.org/W2562899248","https://openalex.org/W1581660190","https://openalex.org/W2590002262","https://openalex.org/W1978968190","https://openalex.org/W2005876250","https://openalex.org/W1874869336"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,19,77,89,187,254],"third":[2,75],"edition":[3],"of":[4,30,45,60,80,101,108,123,169,210,227,242,266],"the":[5,12,37,50,55,64,74,81,94,102,112,118,121,124,130,142,152,156,164,166,191,198,211,228,235,243,250,260,267,274,283,295,309],"BioNLP":[6],"Shared":[7],"Task":[8],"was":[9,24,70,91,172],"held":[10],"with":[11],"grand":[13,51],"theme":[14],"\"knowledge":[15],"base":[16],"construction":[17],"(KB)\".":[18],"Genia":[20],"Event":[21],"(GE)":[22],"task":[23,69,134,237,252,269,290,303],"re-designed":[25],"and":[26,97,127,177,213,308],"implemented":[27],"in":[28,73,85,155,185,256],"light":[29],"this":[31],"theme.":[32],"For":[33,163],"its":[34],"final":[35,78,167],"report,":[36],"participating":[38,82,153],"systems":[39,83,154],"were":[40,183],"evaluated":[41,178],"from":[42,57],"a":[43,58,160,208,263],"perspective":[44,59],"annotation.":[46],"To":[47,104],"further":[48,272],"explore":[49],"theme,":[52],"we":[53,116],"extended":[54,148],"evaluation":[56,79,149,192],"KB":[61,161],"construction.":[62],"Also,":[63],"Gene":[65],"Regulation":[66],"Ontology":[67],"(GRO)":[68],"newly":[71],"introduced":[72],"edition.":[76],"resulted":[84],"relatively":[86],"low":[87],"performance.":[88,293],"reason":[90],"attributed":[92],"to":[93,138,174,249,306],"large":[95],"size":[96],"complex":[98],"semantic":[99],"representation":[100],"ontology.":[103,270],"investigate":[105],"potential":[106],"benefits":[107],"resource":[109],"exchange":[110],"between":[111,120,197],"presumably":[113],"similar":[114],"tasks,":[115,126],"measured":[117],"overlap":[119],"datasets":[122,219],"two":[125,199],"tested":[128],"whether":[129],"dataset":[131],"for":[132,282],"one":[133],"can":[135],"be":[136,194,232,247],"used":[137,273],"enhance":[139],"performance":[140],"on":[141,150],"other.":[143],"RESULTS:":[144],"We":[145,205,271],"report":[146],"an":[147],"all":[151],"GE":[157,212,229,251,268,284,289,297],"task,":[158,285],"incoporating":[159],"perspective.":[162],"evaluation,":[165],"submission":[168],"each":[170,221],"participant":[171,291],"converted":[173,233,275,296],"RDF":[175],"statements,":[176],"using":[179],"8":[180],"queries":[181],"that":[182,190,259],"formulated":[184],"SPARQL.":[186],"results":[188],"suggest":[189],"may":[193],"concluded":[195],"differently":[196],"different":[200],"perspectives,":[201],"annotation":[202],"vs.":[203],"KB.":[204],"also":[206],"provide":[207],"comparison":[209],"GRO":[214,236,244,261,276,302],"tasks":[215],"by":[216],"converting":[217],"their":[218],"into":[220,234],"other's":[222],"format.":[223,253],"More":[224],"than":[225],"90%":[226],"data":[230,245,277,281,298],"could":[231,246],"format,":[238],"while":[239],"only":[240],"half":[241],"mapped":[248],"imbalance":[255],"conversion":[257],"indicates":[258],"is":[262],"comprehensive":[264],"extension":[265],"as":[278],"additional":[279],"training":[280],"which":[286],"helped":[287],"improve":[288],"system":[292],"However,":[294],"did":[299],"not":[300],"help":[301],"participants,":[304],"due":[305],"overfitting":[307],"ontology":[310],"gap.":[311]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":4}],"updated_date":"2026-07-19T05:54:51.957546","created_date":"2025-10-10T00:00:00"}
