{"id":"https://openalex.org/W1679133234","doi":"https://doi.org/10.1186/1471-2105-16-s10-s2","title":"Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013","display_name":"Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013","publication_year":2015,"publication_date":"2015-06-23","ids":{"openalex":"https://openalex.org/W1679133234","doi":"https://doi.org/10.1186/1471-2105-16-s10-s2","mag":"1679133234","pmid":"https://pubmed.ncbi.nlm.nih.gov/26202570"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-16-s10-s2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-16-s10-s2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-16-S10-S2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-16-S10-S2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066925770","display_name":"Sampo Pyysalo","orcid":"https://orcid.org/0000-0002-6279-5000"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Sampo Pyysalo","raw_affiliation_strings":["Department of Information technology, University of Turku, Turku, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information technology, University of Turku, Turku, Finland","institution_ids":["https://openalex.org/I155660961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007825608","display_name":"Tomoko Ohta","orcid":"https://orcid.org/0000-0002-9418-8352"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tomoko Ohta","raw_affiliation_strings":["textimi, Tokyo, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"textimi, Tokyo, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071577126","display_name":"Rafa\u0142 Rak","orcid":"https://orcid.org/0000-0001-9780-4205"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Rafal Rak","raw_affiliation_strings":["National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069244841","display_name":"Andrew Rowley","orcid":"https://orcid.org/0000-0002-2646-8520"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew Rowley","raw_affiliation_strings":["National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111440334","display_name":"Hong-Woo Chun","orcid":null},"institutions":[{"id":"https://openalex.org/I878022262","display_name":"Korea Institute of Science & Technology Information","ror":"https://ror.org/01k4yrm29","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I878022262"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hong-Woo Chun","raw_affiliation_strings":["Software Research Center, Korea Institute of Science and Technology Information (KISTI), Daejeon, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Software Research Center, Korea Institute of Science and Technology Information (KISTI), Daejeon, South Korea","institution_ids":["https://openalex.org/I878022262"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003719272","display_name":"Sung-Jae Jung","orcid":"https://orcid.org/0000-0001-8266-0480"},"institutions":[{"id":"https://openalex.org/I878022262","display_name":"Korea Institute of Science & Technology Information","ror":"https://ror.org/01k4yrm29","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I878022262"]},{"id":"https://openalex.org/I88761825","display_name":"Korea University of Science and Technology","ror":"https://ror.org/000qzf213","country_code":"KR","type":"education","lineage":["https://openalex.org/I88761825"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sung-Jae Jung","raw_affiliation_strings":["Department of Applied Information Science, University of Science and Technology (UST), Daejeon, South Korea","Software Research Center, Korea Institute of Science and Technology Information (KISTI), Daejeon, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Applied Information Science, University of Science and Technology (UST), Daejeon, South Korea","institution_ids":["https://openalex.org/I88761825"]},{"raw_affiliation_string":"Software Research Center, Korea Institute of Science and Technology Information (KISTI), Daejeon, South Korea","institution_ids":["https://openalex.org/I878022262"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109058327","display_name":"Sung-Pil Choi","orcid":null},"institutions":[{"id":"https://openalex.org/I28615091","display_name":"Kyonggi University","ror":"https://ror.org/032xf8h46","country_code":"KR","type":"education","lineage":["https://openalex.org/I28615091"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sung-Pil Choi","raw_affiliation_strings":["Department of Library and Information Science, Kyonggi University, Suwon, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Library and Information Science, Kyonggi University, Suwon, South Korea","institution_ids":["https://openalex.org/I28615091"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112241147","display_name":"Jun\u2019ichi Tsujii","orcid":null},"institutions":[{"id":"https://openalex.org/I4210113369","display_name":"Microsoft Research Asia (China)","ror":"https://ror.org/0300m5276","country_code":"CN","type":"company","lineage":["https://openalex.org/I1290206253","https://openalex.org/I4210113369"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun'ichi Tsujii","raw_affiliation_strings":["Microsoft Research Asia, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microsoft Research Asia, Beijing, China","institution_ids":["https://openalex.org/I4210113369"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077976343","display_name":"Sophia Ananiadou","orcid":"https://orcid.org/0000-0002-4097-9191"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sophia Ananiadou","raw_affiliation_strings":["National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5066925770"],"corresponding_institution_ids":["https://openalex.org/I155660961"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.9905,"has_fulltext":true,"cited_by_count":90,"citation_normalized_percentile":{"value":0.94298572,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"16","issue":"S10","first_page":"S2","last_page":"S2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7074000239372253,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7074000239372253,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.2134000062942505,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.03150000050663948,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7851608991622925},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.7705554962158203},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.6725146770477295},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.49304959177970886},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.47981715202331543},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4152982831001282},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.30937182903289795},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.23181286454200745},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.13886487483978271}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7851608991622925},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.7705554962158203},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.6725146770477295},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.49304959177970886},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.47981715202331543},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4152982831001282},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.30937182903289795},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.23181286454200745},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.13886487483978271},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-16-s10-s2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-16-s10-s2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-16-S10-S2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26202570","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26202570","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pure.atira.dk:publications/c14766f4-878e-4ca3-9f14-d953a5b9a47e","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/c14766f4-878e-4ca3-9f14-d953a5b9a47e","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Pyysalo, S, Ohta, T, Rak, R, Rowley, A, Chun, H W, Jung, S J, Choi, S P, Tsujii, J & Ananiadou, S 2015, 'Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013', BMC Bioinformatics, vol. 16, no. 10, S2. https://doi.org/10.1186/1471-2105-16-S10-S2","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4511510","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4511510","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-16-s10-s2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-16-s10-s2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-16-S10-S2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4793955247","display_name":null,"funder_award_id":"BB/G53025X/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G64586531","display_name":"From text to pathways: text mining techniques for reconstructing signalling pathways","funder_award_id":"BB/G53025X/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320322105","display_name":"Korea Institute of Science and Technology Information","ror":"https://ror.org/01k4yrm29"},{"id":"https://openalex.org/F4320323313","display_name":"Turun Yliopisto","ror":"https://ror.org/05vghhr25"},{"id":"https://openalex.org/F4320324161","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63"},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1679133234.pdf","grobid_xml":"https://content.openalex.org/works/W1679133234.grobid-xml"},"referenced_works_count":100,"referenced_works":["https://openalex.org/W8550301","https://openalex.org/W63642558","https://openalex.org/W74841586","https://openalex.org/W76749362","https://openalex.org/W122290181","https://openalex.org/W1508977358","https://openalex.org/W1551863630","https://openalex.org/W1553452033","https://openalex.org/W1553529581","https://openalex.org/W1630427015","https://openalex.org/W1634950984","https://openalex.org/W1679133234","https://openalex.org/W1757434866","https://openalex.org/W1757909678","https://openalex.org/W1830777114","https://openalex.org/W1859283887","https://openalex.org/W1874869336","https://openalex.org/W1914733988","https://openalex.org/W1935064633","https://openalex.org/W1965893653","https://openalex.org/W1969709265","https://openalex.org/W1978486653","https://openalex.org/W1982464493","https://openalex.org/W1990484467","https://openalex.org/W1991903527","https://openalex.org/W2018874418","https://openalex.org/W2020278455","https://openalex.org/W2032566933","https://openalex.org/W2033377040","https://openalex.org/W2034269086","https://openalex.org/W2043460027","https://openalex.org/W2048059249","https://openalex.org/W2051547811","https://openalex.org/W2051718393","https://openalex.org/W2052947212","https://openalex.org/W2064299012","https://openalex.org/W2065807795","https://openalex.org/W2075655036","https://openalex.org/W2081484203","https://openalex.org/W2085809930","https://openalex.org/W2098722636","https://openalex.org/W2099701465","https://openalex.org/W2100276951","https://openalex.org/W2100627415","https://openalex.org/W2103017472","https://openalex.org/W2103320915","https://openalex.org/W2104108767","https://openalex.org/W2107005506","https://openalex.org/W2107580398","https://openalex.org/W2110408238","https://openalex.org/W2110871096","https://openalex.org/W2114124738","https://openalex.org/W2116034137","https://openalex.org/W2120754707","https://openalex.org/W2121075355","https://openalex.org/W2121844933","https://openalex.org/W2122496897","https://openalex.org/W2124772738","https://openalex.org/W2125712079","https://openalex.org/W2127239015","https://openalex.org/W2129086686","https://openalex.org/W2129592938","https://openalex.org/W2132122858","https://openalex.org/W2134967412","https://openalex.org/W2135118172","https://openalex.org/W2141885858","https://openalex.org/W2142678031","https://openalex.org/W2145435867","https://openalex.org/W2147585745","https://openalex.org/W2149378423","https://openalex.org/W2150908245","https://openalex.org/W2152228269","https://openalex.org/W2153258203","https://openalex.org/W2154142897","https://openalex.org/W2157306201","https://openalex.org/W2161682775","https://openalex.org/W2163670493","https://openalex.org/W2171283231","https://openalex.org/W2171469918","https://openalex.org/W2172102555","https://openalex.org/W2179494026","https://openalex.org/W2250678356","https://openalex.org/W2251108261","https://openalex.org/W2251279337","https://openalex.org/W2251431888","https://openalex.org/W2251450145","https://openalex.org/W2252226131","https://openalex.org/W2289614966","https://openalex.org/W2481510159","https://openalex.org/W2495004097","https://openalex.org/W2552843868","https://openalex.org/W2612240612","https://openalex.org/W2914431807","https://openalex.org/W2916355958","https://openalex.org/W2989631226","https://openalex.org/W4210623056","https://openalex.org/W4213060373","https://openalex.org/W4231056502","https://openalex.org/W4247198512","https://openalex.org/W4300022934"],"related_works":["https://openalex.org/W4385572368","https://openalex.org/W2916147465","https://openalex.org/W1757434866","https://openalex.org/W3004288456","https://openalex.org/W4362496998","https://openalex.org/W2184397297","https://openalex.org/W2251431888","https://openalex.org/W1663435917","https://openalex.org/W2810079151","https://openalex.org/W2616159224"],"abstract_inverted_index":{"BACKGROUND:":[0],"Since":[1],"their":[2],"introduction":[3],"in":[4,14,51,108,115,165],"2009,":[5],"the":[6,16,23,29,37,52,64,78,85,96,109,116,145,151,161,183,188,202,208,214,240],"BioNLP":[7,53],"Shared":[8,54],"Task":[9,55],"events":[10],"have":[11],"been":[12],"instrumental":[13],"advancing":[15],"development":[17,86],"of":[18,26,66,74,87,98,124,142,157,200,204,211,216],"methods":[19,197],"and":[20,41,68,77,102,112,132,148,190,213,222,236],"resources":[21,237],"for":[22,229],"automatic":[24],"extraction":[25,48,65,93,125,135,177,196],"information":[27],"from":[28,239],"biomedical":[30],"literature.":[31],"In":[32],"this":[33],"paper,":[34],"we":[35],"present":[36],"Cancer":[38],"Genetics":[39],"(CG)":[40],"Pathway":[42],"Curation":[43],"(PC)":[44],"tasks,":[45],"two":[46,113],"event":[47,176],"tasks":[49,224],"introduced":[50,134],"2013.":[56],"The":[57,137,171,220],"CG":[58,110,146,189,221],"task":[59,80,111,147,192,242],"focuses":[60],"on":[61,95,144,150,207],"cancer,":[62],"emphasizing":[63],"physiological":[67],"pathological":[69],"processes":[70],"at":[71],"various":[72],"levels":[73],"biological":[75],"organization,":[76],"PC":[79,117,152,191,223],"targets":[81,94],"reactions":[82],"relevant":[83],"to":[84,160,181],"biomolecular":[88,217],"pathway":[89,100,218],"models,":[90],"defining":[91],"its":[92],"basis":[97],"established":[99,129],"representations":[101],"ontologies.":[103],"RESULTS:":[104],"Six":[105],"groups":[106,114],"participated":[107],"task,":[118,153],"together":[119],"applying":[120],"a":[121,155],"wide":[122],"range":[123],"approaches":[126],"including":[127],"both":[128],"state-of-the-art":[130],"systems":[131,139],"newly":[133],"methods.":[136],"best-performing":[138],"achieved":[140,164],"F-scores":[141],"55%":[143],"53%":[149],"demonstrating":[154],"level":[156],"performance":[158],"comparable":[159],"best":[162],"results":[163,172],"similar":[166],"previously":[167],"proposed":[168],"tasks.":[169],"CONCLUSIONS:":[170],"indicate":[173],"that":[174,195],"existing":[175],"technology":[178],"can":[179],"generalize":[180],"meet":[182],"novel":[184],"challenges":[185,228],"represented":[186],"by":[187],"settings,":[193],"suggesting":[194],"are":[198],"capable":[199],"supporting":[201],"construction":[203],"knowledge":[205],"bases":[206],"molecular":[209],"mechanisms":[210],"cancer":[212],"curation":[215],"models.":[219],"continue":[225],"as":[226],"open":[227],"all":[230],"interested":[231],"parties,":[232],"with":[233],"data,":[234],"tools":[235],"available":[238],"shared":[241],"homepage.":[243]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":5}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
