{"id":"https://openalex.org/W2165472199","doi":"https://doi.org/10.1186/1471-2105-16-s1-s3","title":"IAOseq: inferring abundance of overlapping genes using RNA-seq data","display_name":"IAOseq: inferring abundance of overlapping genes using RNA-seq data","publication_year":2015,"publication_date":"2015-01-21","ids":{"openalex":"https://openalex.org/W2165472199","doi":"https://doi.org/10.1186/1471-2105-16-s1-s3","mag":"2165472199","pmid":"https://pubmed.ncbi.nlm.nih.gov/25707673"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-16-s1-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-16-s1-s3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-16-S1-S3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-16-S1-S3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110926223","display_name":"Hong Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hong Sun","raw_affiliation_strings":["Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, China","Shanghai Center for Bioinformation Technology, Shanghai, 200235, China","Shanghai Center for Bioinformation Technology, Shanghai, China","Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Shanghai Center for Bioinformation Technology, Shanghai, 200235, China","institution_ids":["https://openalex.org/I4210162648"]},{"raw_affiliation_string":"Shanghai Center for Bioinformation Technology, Shanghai, China","institution_ids":["https://openalex.org/I4210162648"]},{"raw_affiliation_string":"Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075535160","display_name":"Shuang Yang","orcid":"https://orcid.org/0000-0002-4779-8553"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuang Yang","raw_affiliation_strings":["School of Life Science and Technology, Tongji University, Shanghai, 200092, China","School of Life Science and Technology, Tongji University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Tongji University, Shanghai, 200092, China","institution_ids":["https://openalex.org/I116953780"]},{"raw_affiliation_string":"School of Life Science and Technology, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005171249","display_name":"Liangliang Tun","orcid":null},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liangliang Tun","raw_affiliation_strings":["School of Life Science and Technology, Tongji University, Shanghai, 200092, China","School of Life Science and Technology, Tongji University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Tongji University, Shanghai, 200092, China","institution_ids":["https://openalex.org/I116953780"]},{"raw_affiliation_string":"School of Life Science and Technology, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008280608","display_name":"Yixue Li","orcid":"https://orcid.org/0000-0002-1198-7176"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yixue Li","raw_affiliation_strings":["Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, China","School of Life Science and Technology, Tongji University, Shanghai, 200092, China","Shanghai Center for Bioinformation Technology, Shanghai, 200235, China","Shanghai Center for Bioinformation Technology, Shanghai, China","Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China","School of Life Science and Technology, Tongji University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366"]},{"raw_affiliation_string":"School of Life Science and Technology, Tongji University, Shanghai, 200092, China","institution_ids":["https://openalex.org/I116953780"]},{"raw_affiliation_string":"Shanghai Center for Bioinformation Technology, Shanghai, 200235, China","institution_ids":["https://openalex.org/I4210162648"]},{"raw_affiliation_string":"Shanghai Center for Bioinformation Technology, Shanghai, China","institution_ids":["https://openalex.org/I4210162648"]},{"raw_affiliation_string":"Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366"]},{"raw_affiliation_string":"School of Life Science and Technology, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I116953780"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.1478,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.56314725,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"16","issue":"S1","first_page":"S3","last_page":"S3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.13740000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.13740000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.08829999715089798,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.08089999854564667,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.7140607833862305},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.6621097922325134},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6078236699104309},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5690328478813171},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5516898036003113},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5216851234436035},{"id":"https://openalex.org/keywords/abundance","display_name":"Abundance (ecology)","score":0.4377831220626831},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.4213002324104309},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.32332879304885864},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2911166548728943},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.06699410080909729}],"concepts":[{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.7140607833862305},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.6621097922325134},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6078236699104309},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5690328478813171},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5516898036003113},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5216851234436035},{"id":"https://openalex.org/C77077793","wikidata":"https://www.wikidata.org/wiki/Q336019","display_name":"Abundance (ecology)","level":2,"score":0.4377831220626831},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4213002324104309},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.32332879304885864},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2911166548728943},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.06699410080909729}],"mesh":[{"descriptor_ui":"D005807","descriptor_name":"Genes, Overlapping","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005807","descriptor_name":"Genes, Overlapping","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005807","descriptor_name":"Genes, Overlapping","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-16-s1-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-16-s1-s3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-16-S1-S3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25707673","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25707673","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4331702","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4331702","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-16-s1-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-16-s1-s3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-16-S1-S3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","score":0.4099999964237213,"display_name":"Responsible consumption and production"}],"awards":[{"id":"https://openalex.org/G1003522617","display_name":null,"funder_award_id":"KSCX2-YW-R-190","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1318772538","display_name":"\u6b63\u53cd\u4e49\u8f6c\u5f55\u673a\u5236\u548c\u8c03\u63a7\u7f51\u7edc\u7684\u7cfb\u7edf\u7814\u7a76","funder_award_id":"31371343","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2738465767","display_name":null,"funder_award_id":"2011CB910204","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3490831005","display_name":"\u771f\u6838\u6a21\u5f0f\u751f\u7269\u57fa\u56e0\u5173\u8054\u7f51\u7edc\u8fdb\u5316\u7814\u7a76","funder_award_id":"30900272","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3829800779","display_name":null,"funder_award_id":"2011KIP204","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5136584997","display_name":null,"funder_award_id":"2011CB510100","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5329370537","display_name":null,"funder_award_id":"2010CB912702","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8508431015","display_name":null,"funder_award_id":"31070752","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2165472199.pdf","grobid_xml":"https://content.openalex.org/works/W2165472199.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1686333409","https://openalex.org/W1963604994","https://openalex.org/W1981509058","https://openalex.org/W1984379676","https://openalex.org/W1984708728","https://openalex.org/W1990293955","https://openalex.org/W1999574084","https://openalex.org/W2000875411","https://openalex.org/W2009965783","https://openalex.org/W2030646320","https://openalex.org/W2037064308","https://openalex.org/W2039408641","https://openalex.org/W2043349549","https://openalex.org/W2048447535","https://openalex.org/W2082461562","https://openalex.org/W2085567058","https://openalex.org/W2093253451","https://openalex.org/W2097860373","https://openalex.org/W2099275700","https://openalex.org/W2099468911","https://openalex.org/W2100448568","https://openalex.org/W2102221598","https://openalex.org/W2102304447","https://openalex.org/W2102813686","https://openalex.org/W2105875994","https://openalex.org/W2106396995","https://openalex.org/W2112001233","https://openalex.org/W2118058166","https://openalex.org/W2118526609","https://openalex.org/W2122056961","https://openalex.org/W2123067735","https://openalex.org/W2124985265","https://openalex.org/W2127775820","https://openalex.org/W2134597218","https://openalex.org/W2136075631","https://openalex.org/W2136725005","https://openalex.org/W2139797627","https://openalex.org/W2141458291","https://openalex.org/W2152045787","https://openalex.org/W2154431984","https://openalex.org/W2157815041","https://openalex.org/W2162825358"],"related_works":["https://openalex.org/W4362511652","https://openalex.org/W4362511917","https://openalex.org/W4362511922","https://openalex.org/W4362485688","https://openalex.org/W4362530184","https://openalex.org/W4362530193","https://openalex.org/W2904597490","https://openalex.org/W4362485661","https://openalex.org/W4362592482","https://openalex.org/W4362511560"],"abstract_inverted_index":{"BACKGROUND:":[0],"Overlapping":[1],"transcription":[2,17,73,134],"constitutes":[3],"a":[4,30,128],"common":[5],"mechanism":[6,151],"for":[7,131],"regulating":[8],"gene":[9],"expression.":[10],"A":[11],"major":[12],"limitation":[13],"of":[14,22,49,71,111,115,119],"the":[15,20,41,46,68,76,95,104,116,148],"overlapping":[16,50,72,79,122,133,154],"assays":[18],"is":[19,35,157],"lack":[21],"high":[23],"throughput":[24],"expression":[25,47,117],"data.":[26,55],"RESULTS:":[27],"We":[28],"developed":[29],"new":[31],"tool":[32,130],"(IAOseq)":[33],"that":[34,103],"based":[36],"on":[37],"reads":[38],"distributions":[39],"along":[40],"transcribed":[42],"regions":[43],"to":[44,88,144],"identify":[45],"levels":[48,118,135],"genes":[51],"from":[52,136],"standard":[53,137],"RNA-seq":[54,138],"Compared":[56],"with":[57],"five":[58],"commonly":[59,105],"used":[60,106,143],"quantification":[61],"methods,":[62],"IAOseq":[63,100,140,156],"showed":[64,102],"better":[65],"performance":[66],"in":[67,94],"estimation":[69],"accuracy":[70],"levels.":[74],"For":[75],"same":[77,120],"strand":[78,91,121],"transcription,":[80],"currently":[81],"existing":[82],"high-throughput":[83],"methods":[84,107],"are":[85],"rarely":[86],"available":[87,159],"distinguish":[89],"which":[90],"was":[92],"present":[93],"original":[96],"mRNA":[97],"template.":[98],"The":[99],"results":[101],"gave":[108],"an":[109],"average":[110],"1.6":[112],"fold":[113],"overestimation":[114],"genes.":[123],"CONCLUSIONS:":[124],"This":[125],"work":[126],"provides":[127],"useful":[129],"mining":[132],"libraries.":[139],"could":[141],"be":[142],"help":[145],"us":[146],"understand":[147],"complex":[149],"regulatory":[150],"mediated":[152],"by":[153],"transcripts.":[155],"freely":[158],"at":[160],"http://lifecenter.sgst.cn/main/en/IAO_seq.jsp.":[161]},"counts_by_year":[{"year":2020,"cited_by_count":2},{"year":2017,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
