{"id":"https://openalex.org/W2138458655","doi":"https://doi.org/10.1186/1471-2105-15-s5-s2","title":"Towards a HPC-oriented parallel implementation of a learning algorithm for bioinformatics applications","display_name":"Towards a HPC-oriented parallel implementation of a learning algorithm for bioinformatics applications","publication_year":2014,"publication_date":"2014-05-01","ids":{"openalex":"https://openalex.org/W2138458655","doi":"https://doi.org/10.1186/1471-2105-15-s5-s2","mag":"2138458655","pmid":"https://pubmed.ncbi.nlm.nih.gov/25077818"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-15-s5-s2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-s5-s2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-S5-S2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-S5-S2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029884896","display_name":"Gianni D\u2019Angelo","orcid":"https://orcid.org/0000-0001-7164-5736"},"institutions":[{"id":"https://openalex.org/I16337185","display_name":"University of Sannio","ror":"https://ror.org/04vc81p87","country_code":"IT","type":"education","lineage":["https://openalex.org/I16337185"]},{"id":"https://openalex.org/I4210122147","display_name":"Istituto Nazionale di Documentazione Innovazione e Ricerca Educativa","ror":"https://ror.org/02rkwhb32","country_code":"IT","type":"government","lineage":["https://openalex.org/I4210122147"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Gianni D'Angelo","raw_affiliation_strings":["Department of Science and Technology (DST), University of Sannio, Benevento, Italy","Futuridea Innovazione Utile e Sostenibile, Benevento, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Science and Technology (DST), University of Sannio, Benevento, Italy","institution_ids":["https://openalex.org/I16337185"]},{"raw_affiliation_string":"Futuridea Innovazione Utile e Sostenibile, Benevento, Italy","institution_ids":["https://openalex.org/I4210122147"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075183627","display_name":"Salvatore Rampone","orcid":"https://orcid.org/0000-0002-2019-2746"},"institutions":[{"id":"https://openalex.org/I16337185","display_name":"University of Sannio","ror":"https://ror.org/04vc81p87","country_code":"IT","type":"education","lineage":["https://openalex.org/I16337185"]},{"id":"https://openalex.org/I4210122147","display_name":"Istituto Nazionale di Documentazione Innovazione e Ricerca Educativa","ror":"https://ror.org/02rkwhb32","country_code":"IT","type":"government","lineage":["https://openalex.org/I4210122147"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Salvatore Rampone","raw_affiliation_strings":["Department of Science and Technology (DST), University of Sannio, Benevento, Italy","Futuridea Innovazione Utile e Sostenibile, Benevento, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Science and Technology (DST), University of Sannio, Benevento, Italy","institution_ids":["https://openalex.org/I16337185"]},{"raw_affiliation_string":"Futuridea Innovazione Utile e Sostenibile, Benevento, Italy","institution_ids":["https://openalex.org/I4210122147"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5075183627"],"corresponding_institution_ids":["https://openalex.org/I16337185","https://openalex.org/I4210122147"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":1.6901,"has_fulltext":true,"cited_by_count":30,"citation_normalized_percentile":{"value":0.84132165,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"15","issue":"S5","first_page":"S2","last_page":"S2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.19779999554157257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.19779999554157257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.11219999939203262,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.10689999908208847,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7595030069351196},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5724109411239624},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5077260732650757},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5070548057556152},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.5029477477073669},{"id":"https://openalex.org/keywords/disjunctive-normal-form","display_name":"Disjunctive normal form","score":0.4833102226257324},{"id":"https://openalex.org/keywords/load-balancing","display_name":"Load balancing (electrical power)","score":0.4245702028274536},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.41751036047935486},{"id":"https://openalex.org/keywords/true-quantified-boolean-formula","display_name":"True quantified Boolean formula","score":0.4141235053539276},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3852832019329071},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.2123790681362152},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1400478184223175},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1275917887687683}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7595030069351196},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5724109411239624},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5077260732650757},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5070548057556152},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.5029477477073669},{"id":"https://openalex.org/C136726353","wikidata":"https://www.wikidata.org/wiki/Q903789","display_name":"Disjunctive normal form","level":2,"score":0.4833102226257324},{"id":"https://openalex.org/C138959212","wikidata":"https://www.wikidata.org/wiki/Q1806783","display_name":"Load balancing (electrical power)","level":3,"score":0.4245702028274536},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.41751036047935486},{"id":"https://openalex.org/C200415742","wikidata":"https://www.wikidata.org/wiki/Q1350285","display_name":"True quantified Boolean formula","level":2,"score":0.4141235053539276},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3852832019329071},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.2123790681362152},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1400478184223175},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1275917887687683},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003205","descriptor_name":"Computing Methodologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003205","descriptor_name":"Computing Methodologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003205","descriptor_name":"Computing Methodologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005060","descriptor_name":"Europe","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005060","descriptor_name":"Europe","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005060","descriptor_name":"Europe","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-15-s5-s2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-s5-s2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-S5-S2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25077818","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25077818","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:arXiv.org:1610.05512","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1610.05512","pdf_url":"https://arxiv.org/pdf/1610.05512","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:europepmc.org:3076106","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4095002","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-15-s5-s2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-s5-s2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-S5-S2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.4099999964237213}],"awards":[],"funders":[{"id":"https://openalex.org/F4320331680","display_name":"Agenzia Nazionale per le Nuove Tecnologie, l'Energia e lo Sviluppo Economico Sostenibile","ror":"https://ror.org/02an8es95"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2138458655.pdf","grobid_xml":"https://content.openalex.org/works/W2138458655.grobid-xml"},"referenced_works_count":79,"referenced_works":["https://openalex.org/W141404642","https://openalex.org/W283571937","https://openalex.org/W585149283","https://openalex.org/W1504694836","https://openalex.org/W1535474573","https://openalex.org/W1561337879","https://openalex.org/W1567694985","https://openalex.org/W1575085314","https://openalex.org/W1606512765","https://openalex.org/W1813030236","https://openalex.org/W1971477714","https://openalex.org/W1984820433","https://openalex.org/W1987595609","https://openalex.org/W1989773675","https://openalex.org/W1994022788","https://openalex.org/W2005703191","https://openalex.org/W2009207944","https://openalex.org/W2020435061","https://openalex.org/W2020999234","https://openalex.org/W2035286924","https://openalex.org/W2041334099","https://openalex.org/W2044758663","https://openalex.org/W2046441184","https://openalex.org/W2049633694","https://openalex.org/W2054804336","https://openalex.org/W2057392949","https://openalex.org/W2065832012","https://openalex.org/W2070337513","https://openalex.org/W2098740506","https://openalex.org/W2099230441","https://openalex.org/W2110836275","https://openalex.org/W2112280891","https://openalex.org/W2113860155","https://openalex.org/W2114112206","https://openalex.org/W2114992132","https://openalex.org/W2118502261","https://openalex.org/W2130377745","https://openalex.org/W2132513611","https://openalex.org/W2136461837","https://openalex.org/W2138458655","https://openalex.org/W2138782497","https://openalex.org/W2151933176","https://openalex.org/W2152009909","https://openalex.org/W2156267802","https://openalex.org/W2156467546","https://openalex.org/W2157681233","https://openalex.org/W2159159598","https://openalex.org/W2160812784","https://openalex.org/W2164649389","https://openalex.org/W2165446840","https://openalex.org/W2167710521","https://openalex.org/W2262513754","https://openalex.org/W2471104003","https://openalex.org/W2520937000","https://openalex.org/W2596342170","https://openalex.org/W2612606421","https://openalex.org/W2911787226","https://openalex.org/W2912565176","https://openalex.org/W2916251779","https://openalex.org/W2916406266","https://openalex.org/W3017143921","https://openalex.org/W3099734589","https://openalex.org/W3120740533","https://openalex.org/W3126330362","https://openalex.org/W3145128584","https://openalex.org/W3145828585","https://openalex.org/W3170514878","https://openalex.org/W3197494818","https://openalex.org/W4211007335","https://openalex.org/W4238433900","https://openalex.org/W4241385190","https://openalex.org/W4241735115","https://openalex.org/W4246219036","https://openalex.org/W4248248354","https://openalex.org/W4249991499","https://openalex.org/W4251735453","https://openalex.org/W4256104642","https://openalex.org/W4285719527","https://openalex.org/W4300622081"],"related_works":["https://openalex.org/W2741679812","https://openalex.org/W138251527","https://openalex.org/W2067983896","https://openalex.org/W4212971335","https://openalex.org/W2428981601","https://openalex.org/W1979404172","https://openalex.org/W1544998733","https://openalex.org/W2478852768","https://openalex.org/W4388328356","https://openalex.org/W2903808331"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,72,107,174,392,405,503,517,553],"huge":[2,222],"quantity":[3],"of":[4,52,89,99,110,127,129,152,155,170,185,208,211,239,253,262,269,300,314,345,356,407,414,433,444,459,463,480,488,534,544,548,579,597],"data":[5,70,100,192,223,267,285,340,519,605],"produced":[6],"in":[7,29,43,84,115,183,188,308,383,477,521,551],"Biomedical":[8],"research":[9],"needs":[10],"sophisticated":[11],"algorithmic":[12,301],"methodologies":[13],"for":[14,60,158,221,386,467],"its":[15,339],"storage,":[16],"analysis,":[17],"and":[18,38,63,140,199,210,215,229,280,324,347,403,438,449,456,471,513,541,556,607],"processing.":[19],"High":[20],"Performance":[21],"Computing":[22],"(HPC)":[23],"appears":[24],"as":[25,362],"a":[26,53,76,81,97,125,153,164,249,332,342,353,363,368,415,434,486,532,542,594],"magic":[27],"bullet":[28],"this":[30,44,522],"challenge.":[31],"However,":[32],"several":[33],"hard":[34],"to":[35,66,193,233,275,297,310,325,337,367,490,493,507,627],"solve":[36],"parallelization":[37,571,608],"load":[39],"balancing":[40],"problems":[41],"arise":[42],"context.":[45],"Here":[46],"we":[47,247,258,272,330,351,373],"discuss":[48],"the":[49,111,122,137,144,150,168,171,186,197,200,205,217,237,240,254,260,263,266,277,284,289,298,305,312,315,357,375,384,387,408,412,420,431,441,452,460,478,481,510,514,557,562,570,576,583,601,617,622,632],"HPC-oriented":[50],"implementation":[51,238,355,504],"general":[54],"purpose":[55],"learning":[56,77],"algorithm,":[57,256],"originally":[58],"conceived":[59],"DNA":[61],"analysis":[62],"recently":[64],"extended":[65],"treat":[67],"uncertainty":[68],"on":[69,243,282,304,451,559,590,614],"(U-BRAIN).":[71],"U-BRAIN":[73,181,242,255,409,445],"algorithm":[74,78,218,241,410],"is":[75,94,219,395,426,505,573,588,612,625],"that":[79,93,131,162,177,621],"finds":[80],"Boolean":[82],"formula":[83,112],"disjunctive":[85],"normal":[86],"form":[87,163],"(DNF),":[88],"approximately":[90],"minimum":[91],"complexity,":[92],"consistent":[95],"with":[96,341],"set":[98,154],"(instances)":[101],"which":[102,189],"may":[103],"have":[104],"missing":[105],"bits.":[106],"conjunctive":[108],"terms":[109],"are":[113,191,207,268,273,286,524],"computed":[114],"an":[116],"iterative":[117],"way":[118],"by":[119,135,142,204,575],"identifying,":[120],"from":[121],"given":[123],"data,":[124],"family":[126,458],"sets":[128],"conditions":[130,148],"must":[132],"be":[133,194,293],"satisfied":[134],"all":[136,143],"positive":[138],"instances":[139],"violated":[141],"negative":[145],"ones;":[146],"such":[147],"allow":[149],"computation":[151],"coefficients":[156],"(relevances)":[157],"each":[159],"attribute":[160],"(literal),":[161],"probability":[165],"distribution,":[166],"allowing":[167],"selection":[169],"term":[172],"literals.":[173],"great":[175,270],"versatility":[176],"characterizes":[178],"it,":[179],"makes":[180],"applicable":[182],"many":[184],"fields":[187],"there":[190],"analyzed.":[195],"However":[196],"memory":[198,511],"execution":[201,515,554],"time":[202,555],"required":[203],"running":[206],"O(n(3))":[209],"O(n(5))":[212],"order,":[213],"respectively,":[214],"so,":[216],"unaffordable":[220],"sets.":[224],"RESULTS:":[225],"We":[226,359],"find":[227],"mathematical":[228],"programming":[230,389],"solutions":[231],"able":[232,336,506],"lead":[234],"us":[235],"towards":[236],"parallel":[244,354,393,442,623],"computers.":[245],"First":[246],"give":[248],"Dynamic":[250],"Programming":[251,370],"model":[252,360,443],"then":[257],"minimize":[259,508],"representation":[261],"relevances.":[264],"When":[265],"size":[271,606],"forced":[274],"use":[276],"mass":[278,333],"memory,":[279],"depending":[281],"where":[283],"actually":[287],"stored,":[288],"access":[290,338,492],"times":[291,629],"can":[292],"quite":[294],"different.":[295],"According":[296],"evaluation":[299],"efficiency":[302],"based":[303],"Disk":[306],"Model,":[307],"order":[309],"reduce":[311],"costs":[313],"communications":[316,581],"between":[317,436,582,604],"different":[318],"memories":[319],"(RAM,":[320],"Cache,":[321],"Mass,":[322],"Virtual)":[323],"achieve":[326],"efficient":[327],"I/O":[328],"performance,":[329],"design":[331,418,425],"storage":[334],"structure":[335,462],"high":[343],"degree":[344],"temporal":[346],"spatial":[348],"locality.":[349],"Then":[350,569],"develop":[352],"algorithm.":[358],"it":[361],"SPMD":[364],"system":[365],"together":[366],"Message-Passing":[369],"Paradigm.":[371],"Here,":[372],"adopt":[374],"high-level":[376],"message-passing":[377],"systems":[378],"MPI":[379],"(Message":[380],"Passing":[381],"Interface)":[382],"version":[385,624],"Java":[388],"language,":[390],"MPJ.":[391],"processing":[394],"organized":[396],"into":[397],"four":[398],"stages:":[399],"partitioning,":[400],"communication,":[401],"agglomeration":[402],"mapping.":[404],"decomposition":[406],"determines":[411],"necessity":[413],"communication":[416],"protocol":[417],"among":[419],"processors":[421],"involved.":[422],"Efficient":[423],"synchronization":[424],"also":[427],"discussed.":[428],"CONCLUSIONS:":[429],"In":[430],"context":[432],"collaboration":[435],"public":[437],"private":[439],"institutions,":[440],"has":[446],"been":[447],"implemented":[448],"tested":[450],"INTEL":[453],"XEON":[454],"E7xxx":[455],"E5xxx":[457],"CRESCO":[461],"Italian":[464],"National":[465],"Agency":[466],"New":[468],"Technologies,":[469],"Energy":[470],"Sustainable":[472],"Economic":[473],"Development":[474],"(ENEA),":[475],"developed":[476],"framework":[479],"European":[482],"Grid":[483],"Infrastructure":[484],"(EGI),":[485],"series":[487],"efforts":[489],"provide":[491],"high-throughput":[494],"computing":[495,501],"resources":[496],"across":[497],"Europe":[498],"using":[499],"grid":[500],"techniques.":[502],"both":[509],"space":[512],"time.":[516],"test":[518],"used":[520],"study":[523],"IPDATA":[525,560],"(Irvine":[526],"Primate":[527],"splice-":[528],"junction":[529],"DATA":[530],"set),":[531],"subset":[533,543],"HS3D":[535],"(Homo":[536],"Sapiens":[537],"Splice":[538],"Sites":[539],"Dataset)":[540],"COSMIC":[545],"(the":[546],"Catalogue":[547],"Somatic":[549],"Mutations":[550],"Cancer).":[552],"speed-up":[558],"reach":[561],"best":[563],"values":[564],"within":[565],"about":[566],"90":[567],"processors.":[568,584],"advantage":[572],"balanced":[574],"greater":[577,595],"cost":[578],"non-local":[580],"A":[585],"similar":[586],"behaviour":[587,611],"evident":[589],"HS3D,":[591],"but":[592],"at":[593],"number":[596],"processors,":[598],"so":[599],"evidencing":[600],"direct":[602],"relationship":[603],"gain.":[609],"This":[610],"confirmed":[613],"COSMIC.":[615],"Overall,":[616],"results":[618],"obtained":[619],"show":[620],"up":[626],"30":[628],"faster":[630],"than":[631],"serial":[633],"one.":[634]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2}],"updated_date":"2026-08-05T07:39:15.569665","created_date":"2025-10-10T00:00:00"}
